RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 ELMSAN1Q6PJG2 1045 aa8.53□□□□□ -1.04
HMGB1P38-201ENST00000490557 WHAMMQ8TF30 809 aa8.53□□□□□ -1.04
HMGB1P38-201ENST00000490557 RRAGCQ9HB90 399 aa8.53□□□□□ -1.04
HMGB1P38-201ENST00000490557 KANSL3Q9P2N6 904 aa8.53□□□□□ -1.04
HMGB1P38-201ENST00000490557 AMOTL2Q9Y2J4 779 aa8.53□□□□□ -1.04
HMGB1P38-201ENST00000490557 CCDC9Q9Y3X0 531 aaKnown RBP8.53□□□□□ -1.04
HMGB1P38-201ENST00000490557 LOC102724428A0A0B4J2F2 783 aa8.52□□□□□ -1.05
HMGB1P38-201ENST00000490557 CPNE3O75131 537 aaKnown RBP8.52□□□□□ -1.05
HMGB1P38-201ENST00000490557 CYP2E1P05181 493 aaPredicted RBP8.52□□□□□ -1.05
HMGB1P38-201ENST00000490557 SIK1P57059 783 aa8.52□□□□□ -1.05
HMGB1P38-201ENST00000490557 ATP2B2Q01814 1243 aa8.52□□□□□ -1.05
HMGB1P38-201ENST00000490557 ORC1Q13415 861 aa8.52□□□□□ -1.05
HMGB1P38-201ENST00000490557 ZFYVE28Q9HCC9 887 aa8.52□□□□□ -1.05
HMGB1P38-201ENST00000490557 PODXL2Q9NZ53 605 aa8.52□□□□□ -1.05
HMGB1P38-201ENST00000490557 EREGO14944 169 aa8.51□□□□□ -1.05
HMGB1P38-201ENST00000490557 EDN3P14138 238 aa8.51□□□□□ -1.05
HMGB1P38-201ENST00000490557 KANK3Q6NY19 840 aa8.51□□□□□ -1.05
HMGB1P38-201ENST00000490557 C1orf229Q6ZS94 237 aaPredicted RBP8.51□□□□□ -1.05
HMGB1P38-201ENST00000490557 CHSY3Q70JA7 882 aa8.51□□□□□ -1.05
HMGB1P38-201ENST00000490557 DNAJC25Q9H1X3 360 aa8.51□□□□□ -1.05
HMGB1P38-201ENST00000490557 ZBTB42B2RXF5 422 aa8.5□□□□□ -1.05
HMGB1P38-201ENST00000490557 J3QW42 95 aa8.5□□□□□ -1.05
HMGB1P38-201ENST00000490557 EIF1AYO14602 144 aaKnown RBP8.5□□□□□ -1.05
HMGB1P38-201ENST00000490557 HOXD8P13378 290 aaPredicted RBP8.5□□□□□ -1.05
HMGB1P38-201ENST00000490557 BTBD6Q96KE9 485 aa8.5□□□□□ -1.05
HMGB1P38-201ENST00000490557 CSRNP1Q96S65 589 aa8.5□□□□□ -1.05
HMGB1P38-201ENST00000490557 CHRDQ9H2X0 955 aa8.5□□□□□ -1.05
HMGB1P38-201ENST00000490557 PNMA6FA0A0J9YX94 578 aa8.49□□□□□ -1.05
HMGB1P38-201ENST00000490557 SHISA8B8ZZ34 492 aa8.49□□□□□ -1.05
HMGB1P38-201ENST00000490557 RGS9O75916 674 aaPredicted RBP8.49□□□□□ -1.05
HMGB1P38-201ENST00000490557 POLR3DP05423 398 aaPredicted RBP8.49□□□□□ -1.05
HMGB1P38-201ENST00000490557 PSAPL1Q6NUJ1 521 aa8.49□□□□□ -1.05
HMGB1P38-201ENST00000490557 NUDT8Q8WV74 236 aa8.49□□□□□ -1.05
HMGB1P38-201ENST00000490557 FAM181BA6NEQ2 426 aa8.48□□□□□ -1.05
HMGB1P38-201ENST00000490557 FAM177BA6PVY3 158 aa8.48□□□□□ -1.05
HMGB1P38-201ENST00000490557 IGHA2P01877 340 aa8.48□□□□□ -1.05
HMGB1P38-201ENST00000490557 FGD1P98174 961 aa8.48□□□□□ -1.05
HMGB1P38-201ENST00000490557 FMR1Q06787 632 aaKnown RBP eCLIP8.48□□□□□ -1.05
HMGB1P38-201ENST00000490557 DSC3Q14574 896 aa8.48□□□□□ -1.05
HMGB1P38-201ENST00000490557 COL13A1Q5TAT6 717 aaPredicted RBP8.48□□□□□ -1.05
HMGB1P38-201ENST00000490557 DNAJC14Q6Y2X3 702 aaPredicted RBP8.48□□□□□ -1.05
HMGB1P38-201ENST00000490557 SMG9Q9H0W8 520 aaKnown RBP8.48□□□□□ -1.05
HMGB1P38-201ENST00000490557 JPH1Q9HDC5 661 aaPredicted RBP8.48□□□□□ -1.05
HMGB1P38-201ENST00000490557 M0R082 166 aa8.47□□□□□ -1.05
HMGB1P38-201ENST00000490557 LILRB5O75023 590 aa8.47□□□□□ -1.05
HMGB1P38-201ENST00000490557 SMNDC1O75940 238 aaKnown RBP eCLIP8.47□□□□□ -1.05
HMGB1P38-201ENST00000490557 P4HBP07237 508 aaKnown RBP8.47□□□□□ -1.05
HMGB1P38-201ENST00000490557 EAPPQ56P03 285 aaPredicted RBP8.47□□□□□ -1.05
HMGB1P38-201ENST00000490557 PERM1Q5SV97 790 aa8.47□□□□□ -1.05
HMGB1P38-201ENST00000490557 PODNQ7Z5L7 613 aa8.47□□□□□ -1.05
HMGB1P38-201ENST00000490557 ZNF417Q8TAU3 575 aa8.47□□□□□ -1.05
HMGB1P38-201ENST00000490557 PLD4Q96BZ4 506 aa8.47□□□□□ -1.05
HMGB1P38-201ENST00000490557 ZNF587Q96SQ5 575 aaPredicted RBP8.47□□□□□ -1.05
HMGB1P38-201ENST00000490557 MDFIQ99750 246 aa8.47□□□□□ -1.05
HMGB1P38-201ENST00000490557 NLRP2Q9NX02 1062 aa8.47□□□□□ -1.05
HMGB1P38-201ENST00000490557 FRRS1LQ9P0K9 344 aa8.47□□□□□ -1.05
HMGB1P38-201ENST00000490557 SALL4Q9UJQ4 1053 aa8.47□□□□□ -1.05
HMGB1P38-201ENST00000490557 NAGPAQ9UK23 515 aa8.47□□□□□ -1.05
HMGB1P38-201ENST00000490557 KIF4AO95239 1232 aa8.46□□□□□ -1.06
HMGB1P38-201ENST00000490557 COL19A1Q14993 1142 aa8.46□□□□□ -1.06
HMGB1P38-201ENST00000490557 ENOX2Q16206 610 aaKnown RBP8.46□□□□□ -1.06
HMGB1P38-201ENST00000490557 USPL1Q5W0Q7 1092 aa8.46□□□□□ -1.06
HMGB1P38-201ENST00000490557 CCDC74AQ96AQ1 378 aa8.46□□□□□ -1.06
HMGB1P38-201ENST00000490557 PIK3R2O00459 728 aa8.45□□□□□ -1.06
HMGB1P38-201ENST00000490557 GADD45BO75293 160 aaPredicted RBP8.45□□□□□ -1.06
HMGB1P38-201ENST00000490557 ALBP02768 609 aa8.45□□□□□ -1.06
HMGB1P38-201ENST00000490557 LDHBP07195 334 aaKnown RBP8.45□□□□□ -1.06
HMGB1P38-201ENST00000490557 ATP11AP98196 1134 aa8.45□□□□□ -1.06
HMGB1P38-201ENST00000490557 CEP135Q66GS9 1140 aa8.45□□□□□ -1.06
HMGB1P38-201ENST00000490557 ALG1LQ6GMV1 187 aa8.45□□□□□ -1.06
HMGB1P38-201ENST00000490557 GALNT12Q8IXK2 581 aa8.45□□□□□ -1.06
HMGB1P38-201ENST00000490557 OSMRQ99650 979 aa8.45□□□□□ -1.06
HMGB1P38-201ENST00000490557 BCL11AQ9H165 835 aa8.45□□□□□ -1.06
HMGB1P38-201ENST00000490557 NPHS2Q9NP85 383 aa8.45□□□□□ -1.06
HMGB1P38-201ENST00000490557 GDF6Q6KF10 455 aaPredicted RBP8.44□□□□□ -1.06
HMGB1P38-201ENST00000490557 NPAS4Q8IUM7 802 aa8.44□□□□□ -1.06
HMGB1P38-201ENST00000490557 CEP120Q8N960 986 aa8.44□□□□□ -1.06
HMGB1P38-201ENST00000490557 LPIN3Q9BQK8 851 aa8.44□□□□□ -1.06
HMGB1P38-201ENST00000490557 PBX4Q9BYU1 374 aa8.44□□□□□ -1.06
HMGB1P38-201ENST00000490557 RASSF4Q9H2L5 321 aa8.44□□□□□ -1.06
HMGB1P38-201ENST00000490557 STARD13Q9Y3M8 1113 aa8.44□□□□□ -1.06
HMGB1P38-201ENST00000490557 ARHGEF15O94989 841 aa8.43□□□□□ -1.06
HMGB1P38-201ENST00000490557 FBF1Q8TES7 1133 aa8.43□□□□□ -1.06
HMGB1P38-201ENST00000490557 ZKSCAN3Q9BRR0 538 aa8.43□□□□□ -1.06
HMGB1P38-201ENST00000490557 BCL2L13Q9BXK5 485 aa8.43□□□□□ -1.06
HMGB1P38-201ENST00000490557 EHD4Q9H223 541 aa8.43□□□□□ -1.06
HMGB1P38-201ENST00000490557 LATS2Q9NRM7 1088 aa8.43□□□□□ -1.06
HMGB1P38-201ENST00000490557 MKL2Q9ULH7 1088 aa8.43□□□□□ -1.06
HMGB1P38-201ENST00000490557 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.43□□□□□ -1.06
HMGB1P38-201ENST00000490557 PPP4R2Q9NY27 417 aa8.42□□□□□ -1.06
HMGB1P38-201ENST00000490557 PDE2AO00408 941 aaPredicted RBP8.41□□□□□ -1.06
HMGB1P38-201ENST00000490557 ACPPP15309 386 aa8.41□□□□□ -1.06
HMGB1P38-201ENST00000490557 IRS1P35568 1242 aa8.41□□□□□ -1.06
HMGB1P38-201ENST00000490557 DGKGP49619 791 aa8.41□□□□□ -1.06
HMGB1P38-201ENST00000490557 ZNF326Q5BKZ1 582 aaKnown RBP8.41□□□□□ -1.06
HMGB1P38-201ENST00000490557 C20orf204Q6ZNR8 217 aa8.41□□□□□ -1.06
HMGB1P38-201ENST00000490557 C8orf86Q6ZUL3 223 aa8.41□□□□□ -1.06
HMGB1P38-201ENST00000490557 BEND7Q8N7W2 519 aaPredicted RBP8.41□□□□□ -1.06
HMGB1P38-201ENST00000490557 ASAP3Q8TDY4 903 aa8.41□□□□□ -1.06
HMGB1P38-201ENST00000490557 EPS8L3Q8TE67 593 aaKnown RBP8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms