RNA–Protein interactions for RNA: ENST00000490393.1

RIPPLY3-203, Transcript of ripply transcriptional repressor 3, humanhuman

TSL 1 (best)

Gene RIPPLY3, Length 1,885 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIPPLY3-203ENST00000490393 ATP2B3Q16720 1220 aa16.37■□□□□ 0.21
RIPPLY3-203ENST00000490393 CCDC152Q4G0S7 254 aa16.37■□□□□ 0.21
RIPPLY3-203ENST00000490393 MCMDC2Q4G0Z9 681 aa16.37■□□□□ 0.21
RIPPLY3-203ENST00000490393 BCL11BQ9C0K0 894 aaPredicted RBP16.37■□□□□ 0.21
RIPPLY3-203ENST00000490393 LAMB2P55268 1798 aa16.37■□□□□ 0.21
RIPPLY3-203ENST00000490393 DDX60Q8IY21 1712 aaKnown RBP16.37■□□□□ 0.21
RIPPLY3-203ENST00000490393 LRP5O75197 1615 aa16.37■□□□□ 0.21
RIPPLY3-203ENST00000490393 TAF5LO75529 589 aa16.37■□□□□ 0.21
RIPPLY3-203ENST00000490393 CUL4AQ13619 759 aa16.37■□□□□ 0.21
RIPPLY3-203ENST00000490393 TSGA10IPQ3SY00 556 aa16.37■□□□□ 0.21
RIPPLY3-203ENST00000490393 SLC10A5Q5PT55 438 aa16.37■□□□□ 0.21
RIPPLY3-203ENST00000490393 USPL1Q5W0Q7 1092 aa16.37■□□□□ 0.21
RIPPLY3-203ENST00000490393 HELLSQ9NRZ9 838 aa16.37■□□□□ 0.21
RIPPLY3-203ENST00000490393 RAB3GAP1Q15042 981 aa16.36■□□□□ 0.21
RIPPLY3-203ENST00000490393 DDX46Q7L014 1031 aaKnown RBP16.36■□□□□ 0.21
RIPPLY3-203ENST00000490393 TMX3Q96JJ7 454 aa16.36■□□□□ 0.21
RIPPLY3-203ENST00000490393 TTC14Q96N46 770 aa16.36■□□□□ 0.21
RIPPLY3-203ENST00000490393 BCL2L12Q9HB09 334 aa16.36■□□□□ 0.21
RIPPLY3-203ENST00000490393 RBM8AQ9Y5S9 174 aaKnown RBP16.36■□□□□ 0.21
RIPPLY3-203ENST00000490393 GOLIM4O00461 696 aa16.35■□□□□ 0.21
RIPPLY3-203ENST00000490393 ZKSCAN1P17029 563 aaPredicted RBP16.35■□□□□ 0.21
RIPPLY3-203ENST00000490393 FGFR2P21802 821 aa16.35■□□□□ 0.21
RIPPLY3-203ENST00000490393 SSFA2P28290 1259 aa16.35■□□□□ 0.21
RIPPLY3-203ENST00000490393 ADORA1P30542 326 aa16.35■□□□□ 0.21
RIPPLY3-203ENST00000490393 KCNQ4P56696 695 aa16.35■□□□□ 0.21
RIPPLY3-203ENST00000490393 SF3B3Q15393 1217 aaKnown RBP16.35■□□□□ 0.21
RIPPLY3-203ENST00000490393 TTC39AQ5SRH9 613 aa16.35■□□□□ 0.21
RIPPLY3-203ENST00000490393 FAM182BQ5T319 152 aa16.35■□□□□ 0.21
RIPPLY3-203ENST00000490393 GORABQ5T7V8 394 aa16.35■□□□□ 0.21
RIPPLY3-203ENST00000490393 INTS4Q96HW7 963 aaKnown RBP16.35■□□□□ 0.21
RIPPLY3-203ENST00000490393 NDUFB9Q9Y6M9 179 aa16.35■□□□□ 0.21
RIPPLY3-203ENST00000490393 LRRFIP1Q32MZ4 808 aaKnown RBP16.35■□□□□ 0.21
RIPPLY3-203ENST00000490393 CREB3L3Q68CJ9 461 aa16.35■□□□□ 0.21
RIPPLY3-203ENST00000490393 PRPF40BQ6NWY9 871 aaKnown RBP16.35■□□□□ 0.21
RIPPLY3-203ENST00000490393 ZSWIM6Q9HCJ5 1215 aa16.35■□□□□ 0.21
RIPPLY3-203ENST00000490393 RTCBQ9Y3I0 505 aaKnown RBP16.35■□□□□ 0.21
RIPPLY3-203ENST00000490393 TAF1LQ8IZX4 1826 aa16.35■□□□□ 0.21
RIPPLY3-203ENST00000490393 SCN7AQ01118 1682 aa16.34■□□□□ 0.21
RIPPLY3-203ENST00000490393 ZMYM1Q5SVZ6 1142 aa16.34■□□□□ 0.21
RIPPLY3-203ENST00000490393 RNF20Q5VTR2 975 aa16.34■□□□□ 0.21
RIPPLY3-203ENST00000490393 ZNF589Q86UQ0 364 aaPredicted RBP16.34■□□□□ 0.21
RIPPLY3-203ENST00000490393 HMG20BQ9P0W2 317 aa16.34■□□□□ 0.21
RIPPLY3-203ENST00000490393 FAM177BA6PVY3 158 aa16.33■□□□□ 0.21
RIPPLY3-203ENST00000490393 SLC27A2O14975 620 aa16.33■□□□□ 0.21
RIPPLY3-203ENST00000490393 RNF113AO15541 343 aaKnown RBP16.33■□□□□ 0.21
RIPPLY3-203ENST00000490393 NUCB2P80303 420 aa16.33■□□□□ 0.21
RIPPLY3-203ENST00000490393 LPIN2Q92539 896 aa16.33■□□□□ 0.21
RIPPLY3-203ENST00000490393 UPF3BQ9BZI7 483 aaKnown RBP16.33■□□□□ 0.21
RIPPLY3-203ENST00000490393 NYXQ9GZU5 481 aa16.33■□□□□ 0.21
RIPPLY3-203ENST00000490393 ZFYP08048 801 aaPredicted RBP16.33■□□□□ 0.2
RIPPLY3-203ENST00000490393 PUM3Q15397 648 aaKnown RBP16.33■□□□□ 0.2
RIPPLY3-203ENST00000490393 CLEC17AQ6ZS10 378 aa16.33■□□□□ 0.2
RIPPLY3-203ENST00000490393 FAM196AQ6ZSG2 479 aa16.33■□□□□ 0.2
RIPPLY3-203ENST00000490393 MPHOSPH8Q99549 860 aa16.33■□□□□ 0.2
RIPPLY3-203ENST00000490393 GNPATO15228 680 aa16.32■□□□□ 0.2
RIPPLY3-203ENST00000490393 ZPR1O75312 459 aa16.32■□□□□ 0.2
RIPPLY3-203ENST00000490393 PSMA5P28066 241 aa16.32■□□□□ 0.2
RIPPLY3-203ENST00000490393 MCM4P33991 863 aa16.32■□□□□ 0.2
RIPPLY3-203ENST00000490393 IGHMBP2P38935 993 aaKnown RBP16.32■□□□□ 0.2
RIPPLY3-203ENST00000490393 KCNJ4P48050 445 aa16.32■□□□□ 0.2
RIPPLY3-203ENST00000490393 VPS53Q5VIR6 699 aa16.32■□□□□ 0.2
RIPPLY3-203ENST00000490393 TBC1D9BQ66K14 1250 aa16.32■□□□□ 0.2
RIPPLY3-203ENST00000490393 ALDH8A1Q9H2A2 487 aaPredicted RBP16.32■□□□□ 0.2
RIPPLY3-203ENST00000490393 SEC31BQ9NQW1 1179 aa16.32■□□□□ 0.2
RIPPLY3-203ENST00000490393 FOXD4L1Q9NU39 408 aa16.32■□□□□ 0.2
RIPPLY3-203ENST00000490393 U3KPZ7 1027 aaPredicted RBP16.32■□□□□ 0.2
RIPPLY3-203ENST00000490393 UQCRFS1P1P0C7P4 283 aa16.31■□□□□ 0.2
RIPPLY3-203ENST00000490393 ERFEQ4G0M1 354 aa16.31■□□□□ 0.2
RIPPLY3-203ENST00000490393 ARHGEF1Q92888 912 aaKnown RBP16.31■□□□□ 0.2
RIPPLY3-203ENST00000490393 SETDB2Q96T68 719 aa16.31■□□□□ 0.2
RIPPLY3-203ENST00000490393 AKAP11Q9UKA4 1901 aa16.31■□□□□ 0.2
RIPPLY3-203ENST00000490393 CYP2E1P05181 493 aaPredicted RBP16.31■□□□□ 0.2
RIPPLY3-203ENST00000490393 HMGB2P26583 209 aaKnown RBP16.31■□□□□ 0.2
RIPPLY3-203ENST00000490393 ARID4AP29374 1257 aaPredicted RBP16.31■□□□□ 0.2
RIPPLY3-203ENST00000490393 FKBP4Q02790 459 aaKnown RBP eCLIP16.31■□□□□ 0.2
RIPPLY3-203ENST00000490393 RUFY3Q7L099 469 aa16.31■□□□□ 0.2
RIPPLY3-203ENST00000490393 TNPO1Q92973 898 aaKnown RBP16.31■□□□□ 0.2
RIPPLY3-203ENST00000490393 CDC5LQ99459 802 aaKnown RBP16.31■□□□□ 0.2
RIPPLY3-203ENST00000490393 DSCC1Q9BVC3 393 aa16.31■□□□□ 0.2
RIPPLY3-203ENST00000490393 CYP46A1Q9Y6A2 500 aa16.31■□□□□ 0.2
RIPPLY3-203ENST00000490393 RPAP1Q9BWH6 1393 aaPredicted RBP16.31■□□□□ 0.2
RIPPLY3-203ENST00000490393 ADRA2BP18089 450 aa16.3■□□□□ 0.2
RIPPLY3-203ENST00000490393 CASTP20810 708 aaKnown RBP16.3■□□□□ 0.2
RIPPLY3-203ENST00000490393 ADCK5Q3MIX3 580 aa16.3■□□□□ 0.2
RIPPLY3-203ENST00000490393 LIMCH1Q9UPQ0 1083 aa16.3■□□□□ 0.2
RIPPLY3-203ENST00000490393 C4BP0C0L5 1744 aa16.29■□□□□ 0.2
RIPPLY3-203ENST00000490393 ARAP2Q8WZ64 1704 aa16.29■□□□□ 0.2
RIPPLY3-203ENST00000490393 SLC5A1P13866 664 aa16.29■□□□□ 0.2
RIPPLY3-203ENST00000490393 ZAP70P43403 619 aa16.29■□□□□ 0.2
RIPPLY3-203ENST00000490393 SCARF1Q14162 830 aa16.29■□□□□ 0.2
RIPPLY3-203ENST00000490393 KRT32Q14532 448 aa16.29■□□□□ 0.2
RIPPLY3-203ENST00000490393 TTF1Q15361 905 aaPredicted RBP16.29■□□□□ 0.2
RIPPLY3-203ENST00000490393 SLC27A3Q5K4L6 730 aa16.29■□□□□ 0.2
RIPPLY3-203ENST00000490393 TRAPPC3LQ5T215 181 aa16.29■□□□□ 0.2
RIPPLY3-203ENST00000490393 CCDC102BQ68D86 513 aa16.29■□□□□ 0.2
RIPPLY3-203ENST00000490393 KRT27Q7Z3Y8 459 aa16.29■□□□□ 0.2
RIPPLY3-203ENST00000490393 JAKMIP1Q96N16 626 aaKnown RBP16.29■□□□□ 0.2
RIPPLY3-203ENST00000490393 SEC62Q99442 399 aaKnown RBP16.29■□□□□ 0.2
RIPPLY3-203ENST00000490393 COL24A1Q17RW2 1714 aa16.29■□□□□ 0.2
RIPPLY3-203ENST00000490393 CHGBP05060 677 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms