RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 IL1RAPL2Q9NP60 686 aa14.27□□□□□ -0.13
TRIM40-208ENST00000489892 CNNM1Q9NRU3 951 aa14.27□□□□□ -0.13
TRIM40-208ENST00000489892 GLRX3O76003 335 aaKnown RBP14.26□□□□□ -0.13
TRIM40-208ENST00000489892 SERPINB2P05120 415 aa14.26□□□□□ -0.13
TRIM40-208ENST00000489892 YBX3P16989 372 aaKnown RBP eCLIP14.26□□□□□ -0.13
TRIM40-208ENST00000489892 APLP1P51693 650 aa14.26□□□□□ -0.13
TRIM40-208ENST00000489892 TTC22Q5TAA0 569 aa14.26□□□□□ -0.13
TRIM40-208ENST00000489892 AACSQ86V21 672 aa14.26□□□□□ -0.13
TRIM40-208ENST00000489892 SYNE4Q8N205 404 aa14.26□□□□□ -0.13
TRIM40-208ENST00000489892 SASH1O94885 1247 aa14.25□□□□□ -0.13
TRIM40-208ENST00000489892 C8orf34Q49A92 452 aa14.25□□□□□ -0.13
TRIM40-208ENST00000489892 TNNI3KQ59H18 835 aa14.25□□□□□ -0.13
TRIM40-208ENST00000489892 DDX46Q7L014 1031 aaKnown RBP14.25□□□□□ -0.13
TRIM40-208ENST00000489892 ANKRD18AQ8IVF6 992 aa14.25□□□□□ -0.13
TRIM40-208ENST00000489892 KLHDC4Q8TBB5 520 aa14.25□□□□□ -0.13
TRIM40-208ENST00000489892 GPBP1L1Q9HC44 474 aaPredicted RBP14.25□□□□□ -0.13
TRIM40-208ENST00000489892 ECHDC1Q9NTX5 307 aa14.25□□□□□ -0.13
TRIM40-208ENST00000489892 CD2APQ9Y5K6 639 aa14.25□□□□□ -0.13
TRIM40-208ENST00000489892 PARP3Q9Y6F1 533 aa14.25□□□□□ -0.13
TRIM40-208ENST00000489892 FPGT-TNNI3KV9GXZ4 949 aa14.25□□□□□ -0.13
TRIM40-208ENST00000489892 ABCC12Q96J65 1359 aa14.24□□□□□ -0.13
TRIM40-208ENST00000489892 SALL3Q9BXA9 1300 aa14.24□□□□□ -0.13
TRIM40-208ENST00000489892 METTL24Q5JXM2 366 aa14.24□□□□□ -0.13
TRIM40-208ENST00000489892 SMIM5Q71RC9 77 aa14.24□□□□□ -0.13
TRIM40-208ENST00000489892 ATG9AQ7Z3C6 839 aa14.24□□□□□ -0.13
TRIM40-208ENST00000489892 SKAP1Q86WV1 359 aa14.24□□□□□ -0.13
TRIM40-208ENST00000489892 UPF2Q9HAU5 1272 aaKnown RBP14.24□□□□□ -0.13
TRIM40-208ENST00000489892 POLRMTO00411 1230 aaKnown RBP14.23□□□□□ -0.13
TRIM40-208ENST00000489892 TFCP2Q12800 502 aa14.23□□□□□ -0.13
TRIM40-208ENST00000489892 PRR5LQ6MZQ0 368 aa14.23□□□□□ -0.13
TRIM40-208ENST00000489892 RPGRQ92834 1020 aaKnown RBP14.23□□□□□ -0.13
TRIM40-208ENST00000489892 CCDC85AQ96PX6 553 aaPredicted RBP14.23□□□□□ -0.13
TRIM40-208ENST00000489892 DAXXQ9UER7 740 aaPredicted RBP14.23□□□□□ -0.13
TRIM40-208ENST00000489892 CDC45O75419 566 aa14.22□□□□□ -0.13
TRIM40-208ENST00000489892 TMC4Q7Z404 712 aa14.22□□□□□ -0.13
TRIM40-208ENST00000489892 TICAM2Q86XR7 235 aa14.22□□□□□ -0.13
TRIM40-208ENST00000489892 C16orf71Q8IYS4 520 aaPredicted RBP14.22□□□□□ -0.13
TRIM40-208ENST00000489892 ZNF594Q96JF6 807 aaPredicted RBP14.22□□□□□ -0.13
TRIM40-208ENST00000489892 BCL11AQ9H165 835 aa14.22□□□□□ -0.13
TRIM40-208ENST00000489892 BSDC1Q9NW68 430 aaPredicted RBP14.22□□□□□ -0.13
TRIM40-208ENST00000489892 RIPOR2Q9Y4F9 1068 aa14.22□□□□□ -0.13
TRIM40-208ENST00000489892 ZNF609O15014 1411 aa14.22□□□□□ -0.13
TRIM40-208ENST00000489892 MMP10P09238 476 aa14.21□□□□□ -0.13
TRIM40-208ENST00000489892 PDE6BP35913 854 aa14.21□□□□□ -0.13
TRIM40-208ENST00000489892 DDR1Q08345 913 aa14.21□□□□□ -0.13
TRIM40-208ENST00000489892 PUM3Q15397 648 aaKnown RBP14.21□□□□□ -0.13
TRIM40-208ENST00000489892 CRY2Q49AN0 593 aa14.21□□□□□ -0.13
TRIM40-208ENST00000489892 LRRC24Q50LG9 513 aa14.21□□□□□ -0.13
TRIM40-208ENST00000489892 CNTROBQ8N137 903 aa14.21□□□□□ -0.13
TRIM40-208ENST00000489892 OTUD7AQ8TE49 926 aaPredicted RBP14.21□□□□□ -0.13
TRIM40-208ENST00000489892 EAF2Q96CJ1 260 aaPredicted RBP14.21□□□□□ -0.13
TRIM40-208ENST00000489892 BRIP1Q9BX63 1249 aa14.21□□□□□ -0.13
TRIM40-208ENST00000489892 ANKRD2Q9GZV1 360 aa14.21□□□□□ -0.13
TRIM40-208ENST00000489892 PDE8BO95263 885 aa14.2□□□□□ -0.14
TRIM40-208ENST00000489892 RPS8P62241 208 aaKnown RBP14.2□□□□□ -0.14
TRIM40-208ENST00000489892 ATP2B3Q16720 1220 aa14.2□□□□□ -0.14
TRIM40-208ENST00000489892 CCDC158Q5M9N0 1113 aa14.2□□□□□ -0.14
TRIM40-208ENST00000489892 GORABQ5T7V8 394 aa14.2□□□□□ -0.14
TRIM40-208ENST00000489892 JMYQ8N9B5 988 aa14.2□□□□□ -0.14
TRIM40-208ENST00000489892 RBM17Q96I25 401 aaKnown RBP14.2□□□□□ -0.14
TRIM40-208ENST00000489892 WWC3Q9ULE0 1092 aa14.2□□□□□ -0.14
TRIM40-208ENST00000489892 NRXN2Q9P2S2 1712 aa14.2□□□□□ -0.14
TRIM40-208ENST00000489892 HIP1O00291 1037 aa14.19□□□□□ -0.14
TRIM40-208ENST00000489892 IFIT1P09914 478 aaKnown RBP14.19□□□□□ -0.14
TRIM40-208ENST00000489892 SLC5A1P13866 664 aa14.19□□□□□ -0.14
TRIM40-208ENST00000489892 ATP5JP18859 108 aa14.19□□□□□ -0.14
TRIM40-208ENST00000489892 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.19□□□□□ -0.14
TRIM40-208ENST00000489892 LPIN2Q92539 896 aa14.19□□□□□ -0.14
TRIM40-208ENST00000489892 NEUROD6Q96NK8 337 aa14.19□□□□□ -0.14
TRIM40-208ENST00000489892 A0A1B0GUL7 405 aa14.18□□□□□ -0.14
TRIM40-208ENST00000489892 KLRG2A4D1S0 409 aaPredicted RBP14.18□□□□□ -0.14
TRIM40-208ENST00000489892 TRIM6-TRIM34B2RNG4 842 aa14.18□□□□□ -0.14
TRIM40-208ENST00000489892 BBOX1O75936 387 aa14.18□□□□□ -0.14
TRIM40-208ENST00000489892 GSPT1P15170 499 aaKnown RBP14.18□□□□□ -0.14
TRIM40-208ENST00000489892 HOXA10P31260 410 aaPredicted RBP14.18□□□□□ -0.14
TRIM40-208ENST00000489892 GRAPQ13588 217 aa14.18□□□□□ -0.14
TRIM40-208ENST00000489892 LRRFIP1Q32MZ4 808 aaKnown RBP14.18□□□□□ -0.14
TRIM40-208ENST00000489892 GRAPLQ8TC17 118 aaPredicted RBP14.18□□□□□ -0.14
TRIM40-208ENST00000489892 PI4K2BQ8TCG2 481 aa14.18□□□□□ -0.14
TRIM40-208ENST00000489892 ZNF526Q8TF50 670 aaPredicted RBP14.18□□□□□ -0.14
TRIM40-208ENST00000489892 EVI5LQ96CN4 794 aa14.18□□□□□ -0.14
TRIM40-208ENST00000489892 CRAMP1Q96RY5 1269 aa14.18□□□□□ -0.14
TRIM40-208ENST00000489892 PUS3Q9BZE2 481 aaKnown RBP14.18□□□□□ -0.14
TRIM40-208ENST00000489892 TMX4Q9H1E5 349 aaPredicted RBP14.18□□□□□ -0.14
TRIM40-208ENST00000489892 SEC31BQ9NQW1 1179 aa14.18□□□□□ -0.14
TRIM40-208ENST00000489892 DBNLQ9UJU6 430 aaKnown RBP14.18□□□□□ -0.14
TRIM40-208ENST00000489892 SDSP20132 328 aa14.17□□□□□ -0.14
TRIM40-208ENST00000489892 ZNF512BQ96KM6 892 aaPredicted RBP14.17□□□□□ -0.14
TRIM40-208ENST00000489892 CCDC8Q9H0W5 538 aaPredicted RBP14.17□□□□□ -0.14
TRIM40-208ENST00000489892 RFX7Q2KHR2 1363 aa14.17□□□□□ -0.14
TRIM40-208ENST00000489892 KIF3CO14782 793 aa14.16□□□□□ -0.14
TRIM40-208ENST00000489892 UQCRFS1P1P0C7P4 283 aa14.16□□□□□ -0.14
TRIM40-208ENST00000489892 NPR1P16066 1061 aa14.16□□□□□ -0.14
TRIM40-208ENST00000489892 ALDH1B1P30837 517 aa14.16□□□□□ -0.14
TRIM40-208ENST00000489892 UBE4AQ14139 1066 aa14.16□□□□□ -0.14
TRIM40-208ENST00000489892 BECN1Q14457 450 aa14.16□□□□□ -0.14
TRIM40-208ENST00000489892 C3orf67Q6ZVT6 689 aa14.16□□□□□ -0.14
TRIM40-208ENST00000489892 VGLL2Q8N8G2 317 aa14.16□□□□□ -0.14
TRIM40-208ENST00000489892 DBNDD2Q9BQY9 259 aa14.16□□□□□ -0.14
TRIM40-208ENST00000489892 PCNTO95613 3336 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms