RNA–Protein interactions for RNA: ENST00000489241.1

XRN1-213, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-213ENST00000489241 SAP130Q9H0E3 1048 aa7.49□□□□□ -1.21
XRN1-213ENST00000489241 PSAPP07602 524 aa7.48□□□□□ -1.21
XRN1-213ENST00000489241 HOXD8P13378 290 aaPredicted RBP7.48□□□□□ -1.21
XRN1-213ENST00000489241 SOX18P35713 384 aa7.48□□□□□ -1.21
XRN1-213ENST00000489241 MKNK1Q9BUB5 465 aa7.48□□□□□ -1.21
XRN1-213ENST00000489241 SMG9Q9H0W8 520 aaKnown RBP7.48□□□□□ -1.21
XRN1-213ENST00000489241 SLAIN2Q9P270 581 aa7.48□□□□□ -1.21
XRN1-213ENST00000489241 USP21Q9UK80 565 aa7.48□□□□□ -1.21
XRN1-213ENST00000489241 TNFRSF10BO14763 440 aa7.47□□□□□ -1.21
XRN1-213ENST00000489241 KCNA1Q09470 495 aa7.47□□□□□ -1.21
XRN1-213ENST00000489241 HFE2Q6ZVN8 426 aa7.47□□□□□ -1.21
XRN1-213ENST00000489241 FBXO11Q86XK2 927 aa7.47□□□□□ -1.21
XRN1-213ENST00000489241 MMP20O60882 483 aa7.46□□□□□ -1.22
XRN1-213ENST00000489241 TRIP4Q15650 581 aaPredicted RBP7.46□□□□□ -1.22
XRN1-213ENST00000489241 ZMYM1Q5SVZ6 1142 aa7.46□□□□□ -1.22
XRN1-213ENST00000489241 NLRP13Q86W25 1043 aa7.46□□□□□ -1.22
XRN1-213ENST00000489241 RGS22Q8NE09 1264 aa7.46□□□□□ -1.22
XRN1-213ENST00000489241 CCER1Q8TC90 406 aaPredicted RBP7.46□□□□□ -1.22
XRN1-213ENST00000489241 NSUN5Q96P11 429 aaKnown RBP7.46□□□□□ -1.22
XRN1-213ENST00000489241 FAM13BQ9NYF5 915 aa7.46□□□□□ -1.22
XRN1-213ENST00000489241 GHRHP01286 108 aa7.45□□□□□ -1.22
XRN1-213ENST00000489241 H2AFB1P0C5Y9 115 aa7.45□□□□□ -1.22
XRN1-213ENST00000489241 H2AFB2P0C5Z0 115 aa7.45□□□□□ -1.22
XRN1-213ENST00000489241 MFAP1P55081 439 aaKnown RBP7.45□□□□□ -1.22
XRN1-213ENST00000489241 FAM26DQ5JW98 314 aa7.45□□□□□ -1.22
XRN1-213ENST00000489241 CAPN12Q6ZSI9 719 aa7.45□□□□□ -1.22
XRN1-213ENST00000489241 PLD4Q96BZ4 506 aa7.45□□□□□ -1.22
XRN1-213ENST00000489241 LOC102724428A0A0B4J2F2 783 aa7.44□□□□□ -1.22
XRN1-213ENST00000489241 SIK1P57059 783 aa7.44□□□□□ -1.22
XRN1-213ENST00000489241 PIK3R5Q8WYR1 880 aa7.44□□□□□ -1.22
XRN1-213ENST00000489241 RBSNQ9H1K0 784 aa7.44□□□□□ -1.22
XRN1-213ENST00000489241 UBAP1LF5GYI3 381 aa7.43□□□□□ -1.22
XRN1-213ENST00000489241 J3QW42 95 aa7.43□□□□□ -1.22
XRN1-213ENST00000489241 ZAP70P43403 619 aa7.43□□□□□ -1.22
XRN1-213ENST00000489241 NAA30Q147X3 362 aaPredicted RBP7.43□□□□□ -1.22
XRN1-213ENST00000489241 PHLDB3Q6NSJ2 640 aa7.43□□□□□ -1.22
XRN1-213ENST00000489241 ABTB2Q8N961 1025 aa7.43□□□□□ -1.22
XRN1-213ENST00000489241 SSBP4Q9BWG4 385 aaPredicted RBP7.43□□□□□ -1.22
XRN1-213ENST00000489241 DEAF1O75398 565 aaPredicted RBP7.42□□□□□ -1.22
XRN1-213ENST00000489241 PRSS36Q5K4E3 855 aa7.42□□□□□ -1.22
XRN1-213ENST00000489241 IGF2-ASQ6U949 168 aa7.42□□□□□ -1.22
XRN1-213ENST00000489241 TXNDC2Q86VQ3 553 aa7.42□□□□□ -1.22
XRN1-213ENST00000489241 OR13H1Q8NG92 308 aa7.42□□□□□ -1.22
XRN1-213ENST00000489241 TP53INP1Q96A56 240 aa7.42□□□□□ -1.22
XRN1-213ENST00000489241 SRA1Q9HD15 236 aaKnown RBP7.42□□□□□ -1.22
XRN1-213ENST00000489241 STIM2Q9P246 746 aa7.42□□□□□ -1.22
XRN1-213ENST00000489241 GDF6Q6KF10 455 aaPredicted RBP7.41□□□□□ -1.22
XRN1-213ENST00000489241 WFDC12Q8WWY7 111 aa7.41□□□□□ -1.22
XRN1-213ENST00000489241 FNDC3AQ9Y2H6 1198 aaKnown RBP7.41□□□□□ -1.22
XRN1-213ENST00000489241 DLL1O00548 723 aa7.4□□□□□ -1.22
XRN1-213ENST00000489241 FOXD4L6Q3SYB3 417 aaPredicted RBP7.4□□□□□ -1.22
XRN1-213ENST00000489241 FOXD4L3Q6VB84 417 aaPredicted RBP7.4□□□□□ -1.22
XRN1-213ENST00000489241 MAP4K3Q8IVH8 894 aa7.4□□□□□ -1.22
XRN1-213ENST00000489241 CACTIN-AS1Q8N1I8 211 aa7.4□□□□□ -1.22
XRN1-213ENST00000489241 DCAF11Q8TEB1 546 aa7.4□□□□□ -1.22
XRN1-213ENST00000489241 GNEQ9Y223 722 aaKnown RBP7.4□□□□□ -1.22
XRN1-213ENST00000489241 IVNS1ABPQ9Y6Y0 642 aa7.4□□□□□ -1.22
XRN1-213ENST00000489241 SCO2A0A1W2PP80 73 aa7.39□□□□□ -1.23
XRN1-213ENST00000489241 NOS3P29474 1203 aa7.39□□□□□ -1.23
XRN1-213ENST00000489241 IREB2P48200 963 aaKnown RBP7.39□□□□□ -1.23
XRN1-213ENST00000489241 IL22RA1Q8N6P7 574 aa7.39□□□□□ -1.23
XRN1-213ENST00000489241 GPR152Q8TDT2 470 aa7.39□□□□□ -1.23
XRN1-213ENST00000489241 ABL1P00519 1130 aa7.38□□□□□ -1.23
XRN1-213ENST00000489241 SCNN1AP37088 669 aa7.38□□□□□ -1.23
XRN1-213ENST00000489241 HYAL2Q12891 473 aa7.38□□□□□ -1.23
XRN1-213ENST00000489241 TTC39BQ5VTQ0 682 aaPredicted RBP7.38□□□□□ -1.23
XRN1-213ENST00000489241 GTF3C2Q8WUA4 911 aaPredicted RBP7.38□□□□□ -1.23
XRN1-213ENST00000489241 MRPL18Q9H0U6 180 aaKnown RBP7.38□□□□□ -1.23
XRN1-213ENST00000489241 SEPT3Q9UH03 358 aa7.38□□□□□ -1.23
XRN1-213ENST00000489241 TRIM33Q9UPN9 1127 aa7.38□□□□□ -1.23
XRN1-213ENST00000489241 ZBTB39O15060 712 aa7.37□□□□□ -1.23
XRN1-213ENST00000489241 SF3B2Q13435 895 aaKnown RBP7.37□□□□□ -1.23
XRN1-213ENST00000489241 FOXD4L4Q8WXT5 416 aaPredicted RBP7.37□□□□□ -1.23
XRN1-213ENST00000489241 MEGF10Q96KG7 1140 aa7.37□□□□□ -1.23
XRN1-213ENST00000489241 SPACA7Q96KW9 195 aa7.37□□□□□ -1.23
XRN1-213ENST00000489241 MUC3BQ9H195 1237 aa7.37□□□□□ -1.23
XRN1-213ENST00000489241 ABI2Q9NYB9 513 aaPredicted RBP7.37□□□□□ -1.23
XRN1-213ENST00000489241 EGFL7Q9UHF1 273 aa7.37□□□□□ -1.23
XRN1-213ENST00000489241 SETDB1Q15047 1291 aa7.36□□□□□ -1.23
XRN1-213ENST00000489241 COL13A1Q5TAT6 717 aaPredicted RBP7.36□□□□□ -1.23
XRN1-213ENST00000489241 PDE12Q6L8Q7 609 aaKnown RBP7.36□□□□□ -1.23
XRN1-213ENST00000489241 HELQQ8TDG4 1101 aa7.36□□□□□ -1.23
XRN1-213ENST00000489241 AKTIPQ9H8T0 292 aa7.36□□□□□ -1.23
XRN1-213ENST00000489241 SMNDC1O75940 238 aaKnown RBP eCLIP7.35□□□□□ -1.23
XRN1-213ENST00000489241 KIF4AO95239 1232 aa7.35□□□□□ -1.23
XRN1-213ENST00000489241 SERPINB4P48594 390 aa7.35□□□□□ -1.23
XRN1-213ENST00000489241 ATP11AP98196 1134 aa7.35□□□□□ -1.23
XRN1-213ENST00000489241 FKBP4Q02790 459 aaKnown RBP eCLIP7.35□□□□□ -1.23
XRN1-213ENST00000489241 SND1Q7KZF4 910 aaKnown RBP eCLIP7.35□□□□□ -1.23
XRN1-213ENST00000489241 TMEM130Q8N3G9 435 aa7.35□□□□□ -1.23
XRN1-213ENST00000489241 PPME1Q9Y570 386 aa7.35□□□□□ -1.23
XRN1-213ENST00000489241 F8W735 103 aaPredicted RBP7.34□□□□□ -1.23
XRN1-213ENST00000489241 ARTNQ5T4W7 220 aa7.34□□□□□ -1.23
XRN1-213ENST00000489241 CEP135Q66GS9 1140 aa7.34□□□□□ -1.23
XRN1-213ENST00000489241 NUDT16Q96DE0 195 aaKnown RBP7.34□□□□□ -1.23
XRN1-213ENST00000489241 ICMTO60725 284 aa7.33□□□□□ -1.24
XRN1-213ENST00000489241 FAM13AO94988 1023 aa7.33□□□□□ -1.24
XRN1-213ENST00000489241 RPLP1P05386 114 aaKnown RBP7.33□□□□□ -1.24
XRN1-213ENST00000489241 CCDC27Q2M243 656 aa7.33□□□□□ -1.24
XRN1-213ENST00000489241 ATCAYQ86WG3 371 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms