RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 DDX58O95786 925 aaKnown RBP23.77■■□□□ 1.4
HDAC6-231ENST00000488905 CCDC152Q4G0S7 254 aa23.77■■□□□ 1.4
HDAC6-231ENST00000488905 CCDC30Q5VVM6 783 aa23.77■■□□□ 1.4
HDAC6-231ENST00000488905 CDC37L1Q7L3B6 337 aa23.77■■□□□ 1.4
HDAC6-231ENST00000488905 CHMP4AQ9BY43 222 aa23.77■■□□□ 1.4
HDAC6-231ENST00000488905 PODXL2Q9NZ53 605 aa23.77■■□□□ 1.4
HDAC6-231ENST00000488905 RPS12P25398 132 aaKnown RBP23.76■■□□□ 1.39
HDAC6-231ENST00000488905 DOK7Q18PE1 504 aa23.76■■□□□ 1.39
HDAC6-231ENST00000488905 METTL22Q9BUU2 404 aaPredicted RBP23.76■■□□□ 1.39
HDAC6-231ENST00000488905 ZNF408Q9H9D4 720 aa23.76■■□□□ 1.39
HDAC6-231ENST00000488905 CACNA1FO60840 1977 aa23.76■■□□□ 1.39
HDAC6-231ENST00000488905 PDE8AO60658 829 aa23.75■■□□□ 1.39
HDAC6-231ENST00000488905 HHIPL1Q96JK4 782 aa23.75■■□□□ 1.39
HDAC6-231ENST00000488905 BEGAINQ9BUH8 593 aa23.75■■□□□ 1.39
HDAC6-231ENST00000488905 AOC2O75106 756 aa23.74■■□□□ 1.39
HDAC6-231ENST00000488905 UFL1O94874 794 aa23.74■■□□□ 1.39
HDAC6-231ENST00000488905 SAMD7Q7Z3H4 446 aa23.74■■□□□ 1.39
HDAC6-231ENST00000488905 TSPYL6Q8N831 410 aa23.74■■□□□ 1.39
HDAC6-231ENST00000488905 KCNQ5Q9NR82 932 aa23.74■■□□□ 1.39
HDAC6-231ENST00000488905 ANKIB1Q9P2G1 1089 aa23.74■■□□□ 1.39
HDAC6-231ENST00000488905 EGFRP00533 1210 aa23.73■■□□□ 1.39
HDAC6-231ENST00000488905 MAP2K2P36507 400 aa23.73■■□□□ 1.39
HDAC6-231ENST00000488905 TBC1D10BQ4KMP7 808 aaPredicted RBP23.73■■□□□ 1.39
HDAC6-231ENST00000488905 ZC3H12CQ9C0D7 883 aaKnown RBP23.73■■□□□ 1.39
HDAC6-231ENST00000488905 GGA1Q9UJY5 639 aa23.73■■□□□ 1.39
HDAC6-231ENST00000488905 MAP3K2Q9Y2U5 619 aa23.73■■□□□ 1.39
HDAC6-231ENST00000488905 JARID2Q92833 1246 aaPredicted RBP23.72■■□□□ 1.39
HDAC6-231ENST00000488905 TSR2Q969E8 191 aaKnown RBP23.72■■□□□ 1.39
HDAC6-231ENST00000488905 CCDC85AQ96PX6 553 aaPredicted RBP23.72■■□□□ 1.39
HDAC6-231ENST00000488905 ZNF609O15014 1411 aa23.72■■□□□ 1.39
HDAC6-231ENST00000488905 ZNF646O15015 1829 aaPredicted RBP23.72■■□□□ 1.39
HDAC6-231ENST00000488905 USP48Q86UV5 1035 aa23.71■■□□□ 1.39
HDAC6-231ENST00000488905 XDHP47989 1333 aa23.7■■□□□ 1.38
HDAC6-231ENST00000488905 CCDC27Q2M243 656 aa23.7■■□□□ 1.38
HDAC6-231ENST00000488905 CCDC184Q52MB2 194 aa23.7■■□□□ 1.38
HDAC6-231ENST00000488905 KSR2Q6VAB6 950 aa23.7■■□□□ 1.38
HDAC6-231ENST00000488905 ANKRD18AQ8IVF6 992 aa23.7■■□□□ 1.38
HDAC6-231ENST00000488905 CASP8AP2Q9UKL3 1982 aa23.69■■□□□ 1.38
HDAC6-231ENST00000488905 PI4KAP2A4QPH2 592 aa23.69■■□□□ 1.38
HDAC6-231ENST00000488905 IGKV5-2P06315 115 aa23.69■■□□□ 1.38
HDAC6-231ENST00000488905 VIL1P09327 827 aaKnown RBP23.69■■□□□ 1.38
HDAC6-231ENST00000488905 CTSWP56202 376 aa23.69■■□□□ 1.38
HDAC6-231ENST00000488905 KRT26Q7Z3Y9 468 aa23.69■■□□□ 1.38
HDAC6-231ENST00000488905 PI4KAP1Q8N8J0 262 aa23.69■■□□□ 1.38
HDAC6-231ENST00000488905 STK31Q9BXU1 1019 aa23.69■■□□□ 1.38
HDAC6-231ENST00000488905 G3V3G9 751 aa23.68■■□□□ 1.38
HDAC6-231ENST00000488905 KIF4BQ2VIQ3 1234 aa23.68■■□□□ 1.38
HDAC6-231ENST00000488905 DCAF8Q5TAQ9 597 aa23.68■■□□□ 1.38
HDAC6-231ENST00000488905 DLK2Q6UY11 383 aa23.68■■□□□ 1.38
HDAC6-231ENST00000488905 BRPF1P55201 1214 aaPredicted RBP23.67■■□□□ 1.38
HDAC6-231ENST00000488905 HUNKP57058 714 aa23.67■■□□□ 1.38
HDAC6-231ENST00000488905 NEXNQ0ZGT2 675 aa23.67■■□□□ 1.38
HDAC6-231ENST00000488905 RBM26Q5T8P6 1007 aaKnown RBP23.67■■□□□ 1.38
HDAC6-231ENST00000488905 WWC1Q8IX03 1113 aa23.67■■□□□ 1.38
HDAC6-231ENST00000488905 DCPSQ96C86 337 aaKnown RBP23.67■■□□□ 1.38
HDAC6-231ENST00000488905 CDC5LQ99459 802 aaKnown RBP23.67■■□□□ 1.38
HDAC6-231ENST00000488905 ADM5C9JUS6 153 aa23.66■■□□□ 1.38
HDAC6-231ENST00000488905 CA12O43570 354 aa23.66■■□□□ 1.38
HDAC6-231ENST00000488905 TWISTNBQ3B726 338 aaPredicted RBP23.66■■□□□ 1.38
HDAC6-231ENST00000488905 GGA3Q9NZ52 723 aa23.66■■□□□ 1.38
HDAC6-231ENST00000488905 TSKSQ9UJT2 592 aa23.66■■□□□ 1.38
HDAC6-231ENST00000488905 AKAP11Q9UKA4 1901 aa23.65■■□□□ 1.38
HDAC6-231ENST00000488905 IL16Q14005 1332 aa23.64■■□□□ 1.38
HDAC6-231ENST00000488905 NEURL1BA8MQ27 555 aa23.64■■□□□ 1.37
HDAC6-231ENST00000488905 ATP2B4P23634 1241 aa23.64■■□□□ 1.37
HDAC6-231ENST00000488905 NOGQ13253 232 aa23.64■■□□□ 1.37
HDAC6-231ENST00000488905 CWF19L2Q2TBE0 894 aaKnown RBP23.64■■□□□ 1.37
HDAC6-231ENST00000488905 RSBN1LQ6PCB5 846 aaPredicted RBP23.64■■□□□ 1.37
HDAC6-231ENST00000488905 AGBL3Q8NEM8 1001 aa23.64■■□□□ 1.37
HDAC6-231ENST00000488905 TTLL11Q8NHH1 800 aa23.64■■□□□ 1.37
HDAC6-231ENST00000488905 ABHD8Q96I13 439 aa23.64■■□□□ 1.37
HDAC6-231ENST00000488905 GREM2Q9H772 168 aa23.64■■□□□ 1.37
HDAC6-231ENST00000488905 GBA2Q9HCG7 927 aaPredicted RBP23.64■■□□□ 1.37
HDAC6-231ENST00000488905 MED23Q9ULK4 1368 aa23.64■■□□□ 1.37
HDAC6-231ENST00000488905 A0A1B0GUL6 1792 aa23.63■■□□□ 1.37
HDAC6-231ENST00000488905 ZNF280AP59817 542 aaPredicted RBP23.63■■□□□ 1.37
HDAC6-231ENST00000488905 ASTN2O75129 1339 aaPredicted RBP23.62■■□□□ 1.37
HDAC6-231ENST00000488905 G2E3Q7L622 706 aa23.62■■□□□ 1.37
HDAC6-231ENST00000488905 SULF1Q8IWU6 871 aa23.62■■□□□ 1.37
HDAC6-231ENST00000488905 PAPPA2Q9BXP8 1791 aa23.61■■□□□ 1.37
HDAC6-231ENST00000488905 UBE3BQ7Z3V4 1068 aa23.61■■□□□ 1.37
HDAC6-231ENST00000488905 C2orf69Q8N8R5 385 aa23.61■■□□□ 1.37
HDAC6-231ENST00000488905 BSDC1Q9NW68 430 aaPredicted RBP23.61■■□□□ 1.37
HDAC6-231ENST00000488905 SLC4A2P04920 1241 aa23.6■■□□□ 1.37
HDAC6-231ENST00000488905 NCBP3Q53F19 620 aaKnown RBP23.6■■□□□ 1.37
HDAC6-231ENST00000488905 RGMBQ6NW40 437 aa23.6■■□□□ 1.37
HDAC6-231ENST00000488905 PODNQ7Z5L7 613 aa23.6■■□□□ 1.37
HDAC6-231ENST00000488905 ZIC5Q96T25 663 aa23.6■■□□□ 1.37
HDAC6-231ENST00000488905 GMLQ99445 158 aa23.6■■□□□ 1.37
HDAC6-231ENST00000488905 MINPP1Q9UNW1 487 aa23.6■■□□□ 1.37
HDAC6-231ENST00000488905 FANCIQ9NVI1 1328 aa23.59■■□□□ 1.37
HDAC6-231ENST00000488905 USP17L3A6NCW0 530 aa23.59■■□□□ 1.37
HDAC6-231ENST00000488905 USP17L4A6NCW7 530 aa23.59■■□□□ 1.37
HDAC6-231ENST00000488905 FLIIQ13045 1269 aa23.59■■□□□ 1.37
HDAC6-231ENST00000488905 USP17L1Q7RTZ2 530 aa23.59■■□□□ 1.37
HDAC6-231ENST00000488905 FAM155AB1AL88 458 aaPredicted RBP23.58■■□□□ 1.37
HDAC6-231ENST00000488905 H7C1W4 665 aa23.58■■□□□ 1.37
HDAC6-231ENST00000488905 USP17L8P0C7I0 530 aa23.58■■□□□ 1.37
HDAC6-231ENST00000488905 ANGEL2Q5VTE6 544 aaKnown RBP23.58■■□□□ 1.37
HDAC6-231ENST00000488905 CDCA5Q96FF9 252 aa23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms