RNA–Protein interactions for RNA: ENST00000488809.2

PTCH1-211, Transcript of patched 1, humanhuman

TSL 3

Gene PTCH1, Length 301 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-211ENST00000488809 SF3B3Q15393 1217 aaKnown RBP8.5□□□□□ -1.05
PTCH1-211ENST00000488809 NECTIN2Q92692 538 aa8.5□□□□□ -1.05
PTCH1-211ENST00000488809 GCC1Q96CN9 775 aa8.5□□□□□ -1.05
PTCH1-211ENST00000488809 ZNF609O15014 1411 aa8.49□□□□□ -1.05
PTCH1-211ENST00000488809 RIPK4P57078 832 aa8.49□□□□□ -1.05
PTCH1-211ENST00000488809 PROSER3Q2NL68 480 aa8.49□□□□□ -1.05
PTCH1-211ENST00000488809 AGBL3Q8NEM8 1001 aa8.49□□□□□ -1.05
PTCH1-211ENST00000488809 PLBD2Q8NHP8 589 aa8.49□□□□□ -1.05
PTCH1-211ENST00000488809 CDCA5Q96FF9 252 aa8.49□□□□□ -1.05
PTCH1-211ENST00000488809 CSRNP1Q96S65 589 aa8.49□□□□□ -1.05
PTCH1-211ENST00000488809 PITPNM2Q9BZ72 1349 aa8.49□□□□□ -1.05
PTCH1-211ENST00000488809 SPEF2Q9C093 1822 aa8.48□□□□□ -1.05
PTCH1-211ENST00000488809 EGFRP00533 1210 aa8.48□□□□□ -1.05
PTCH1-211ENST00000488809 VIL1P09327 827 aaKnown RBP8.48□□□□□ -1.05
PTCH1-211ENST00000488809 NF2P35240 595 aa8.48□□□□□ -1.05
PTCH1-211ENST00000488809 RPS8P62241 208 aaKnown RBP8.48□□□□□ -1.05
PTCH1-211ENST00000488809 GPSM2P81274 684 aa8.48□□□□□ -1.05
PTCH1-211ENST00000488809 DOK7Q18PE1 504 aa8.48□□□□□ -1.05
PTCH1-211ENST00000488809 ANKRD13DQ6ZTN6 518 aa8.48□□□□□ -1.05
PTCH1-211ENST00000488809 RASAL3Q86YV0 1011 aa8.48□□□□□ -1.05
PTCH1-211ENST00000488809 TBC1D16Q8TBP0 767 aa8.48□□□□□ -1.05
PTCH1-211ENST00000488809 CELF1Q92879 486 aaKnown RBP8.48□□□□□ -1.05
PTCH1-211ENST00000488809 ANKIB1Q9P2G1 1089 aa8.48□□□□□ -1.05
PTCH1-211ENST00000488809 POLLQ9UGP5 575 aa8.48□□□□□ -1.05
PTCH1-211ENST00000488809 HPS5Q9UPZ3 1129 aa8.48□□□□□ -1.05
PTCH1-211ENST00000488809 RTL9Q8NET4 1388 aa8.48□□□□□ -1.05
PTCH1-211ENST00000488809 IRS4O14654 1257 aaPredicted RBP8.47□□□□□ -1.05
PTCH1-211ENST00000488809 UFL1O94874 794 aa8.47□□□□□ -1.05
PTCH1-211ENST00000488809 HOXB7P09629 217 aa8.47□□□□□ -1.05
PTCH1-211ENST00000488809 SREBF2Q12772 1141 aa8.47□□□□□ -1.05
PTCH1-211ENST00000488809 HDGFL1Q5TGJ6 251 aa8.47□□□□□ -1.05
PTCH1-211ENST00000488809 ANGEL2Q5VTE6 544 aaKnown RBP8.47□□□□□ -1.05
PTCH1-211ENST00000488809 RSBN1LQ6PCB5 846 aaPredicted RBP8.47□□□□□ -1.05
PTCH1-211ENST00000488809 DLK2Q6UY11 383 aa8.47□□□□□ -1.05
PTCH1-211ENST00000488809 FAM89AQ96GI7 184 aa8.47□□□□□ -1.05
PTCH1-211ENST00000488809 ISCA1Q9BUE6 129 aa8.47□□□□□ -1.05
PTCH1-211ENST00000488809 HYPKQ9NX55 129 aa8.47□□□□□ -1.05
PTCH1-211ENST00000488809 PODXL2Q9NZ53 605 aa8.47□□□□□ -1.05
PTCH1-211ENST00000488809 CHPF2Q9P2E5 772 aa8.47□□□□□ -1.05
PTCH1-211ENST00000488809 DBF4Q9UBU7 674 aaPredicted RBP8.47□□□□□ -1.05
PTCH1-211ENST00000488809 GGA1Q9UJY5 639 aa8.47□□□□□ -1.05
PTCH1-211ENST00000488809 ECM29Q5VYK3 1845 aa8.47□□□□□ -1.05
PTCH1-211ENST00000488809 RBBP6Q7Z6E9 1792 aaKnown RBP8.46□□□□□ -1.05
PTCH1-211ENST00000488809 USP17L8P0C7I0 530 aa8.46□□□□□ -1.06
PTCH1-211ENST00000488809 TMPOP42166 694 aaKnown RBP8.46□□□□□ -1.06
PTCH1-211ENST00000488809 ZNF280AP59817 542 aaPredicted RBP8.46□□□□□ -1.06
PTCH1-211ENST00000488809 SCARF1Q14162 830 aa8.46□□□□□ -1.06
PTCH1-211ENST00000488809 TTLL12Q14166 644 aaPredicted RBP8.46□□□□□ -1.06
PTCH1-211ENST00000488809 CCDC152Q4G0S7 254 aa8.46□□□□□ -1.06
PTCH1-211ENST00000488809 NOM1Q5C9Z4 860 aaKnown RBP8.46□□□□□ -1.06
PTCH1-211ENST00000488809 FBXO46Q6PJ61 603 aaPredicted RBP8.46□□□□□ -1.06
PTCH1-211ENST00000488809 MYOZ2Q9NPC6 264 aa8.46□□□□□ -1.06
PTCH1-211ENST00000488809 LAMB1P07942 1786 aa8.45□□□□□ -1.06
PTCH1-211ENST00000488809 ATP5J2-PTCD1G3V325 749 aa8.45□□□□□ -1.06
PTCH1-211ENST00000488809 MMP14P50281 582 aa8.45□□□□□ -1.06
PTCH1-211ENST00000488809 GOLGA2Q08379 1002 aa8.45□□□□□ -1.06
PTCH1-211ENST00000488809 TRIM28Q13263 835 aaKnown RBP8.45□□□□□ -1.06
PTCH1-211ENST00000488809 RTL5Q5HYW3 569 aaPredicted RBP8.45□□□□□ -1.06
PTCH1-211ENST00000488809 RIC3Q7Z5B4 369 aa8.45□□□□□ -1.06
PTCH1-211ENST00000488809 PODNQ7Z5L7 613 aa8.45□□□□□ -1.06
PTCH1-211ENST00000488809 OGFOD1Q8N543 542 aa8.45□□□□□ -1.06
PTCH1-211ENST00000488809 ZBTB38Q8NAP3 1195 aaPredicted RBP8.45□□□□□ -1.06
PTCH1-211ENST00000488809 ZNF296Q8WUU4 475 aaPredicted RBP8.45□□□□□ -1.06
PTCH1-211ENST00000488809 KCNQ5Q9NR82 932 aa8.45□□□□□ -1.06
PTCH1-211ENST00000488809 LAS1LQ9Y4W2 734 aaKnown RBP8.45□□□□□ -1.06
PTCH1-211ENST00000488809 XDHP47989 1333 aa8.45□□□□□ -1.06
PTCH1-211ENST00000488809 MYO3BQ8WXR4 1341 aa8.45□□□□□ -1.06
PTCH1-211ENST00000488809 USP17L3A6NCW0 530 aa8.44□□□□□ -1.06
PTCH1-211ENST00000488809 USP17L4A6NCW7 530 aa8.44□□□□□ -1.06
PTCH1-211ENST00000488809 GPR25O00155 361 aa8.44□□□□□ -1.06
PTCH1-211ENST00000488809 CHL1O00533 1208 aa8.44□□□□□ -1.06
PTCH1-211ENST00000488809 FKTNO75072 461 aa8.44□□□□□ -1.06
PTCH1-211ENST00000488809 TBC1D8O95759 1140 aa8.44□□□□□ -1.06
PTCH1-211ENST00000488809 ALDH1A1P00352 501 aa8.44□□□□□ -1.06
PTCH1-211ENST00000488809 ATP2B4P23634 1241 aa8.44□□□□□ -1.06
PTCH1-211ENST00000488809 TM4SF4P48230 202 aa8.44□□□□□ -1.06
PTCH1-211ENST00000488809 USP17L1Q7RTZ2 530 aa8.44□□□□□ -1.06
PTCH1-211ENST00000488809 ANKRD18AQ8IVF6 992 aa8.44□□□□□ -1.06
PTCH1-211ENST00000488809 CHMP4AQ9BY43 222 aa8.44□□□□□ -1.06
PTCH1-211ENST00000488809 COL4A1P02462 1669 aa8.43□□□□□ -1.06
PTCH1-211ENST00000488809 ZNF646O15015 1829 aaPredicted RBP8.43□□□□□ -1.06
PTCH1-211ENST00000488809 PDE8AO60658 829 aa8.43□□□□□ -1.06
PTCH1-211ENST00000488809 NEUROD2Q15784 382 aa8.43□□□□□ -1.06
PTCH1-211ENST00000488809 ARMC9Q7Z3E5 817 aa8.43□□□□□ -1.06
PTCH1-211ENST00000488809 CCDC191Q8NCU4 936 aa8.43□□□□□ -1.06
PTCH1-211ENST00000488809 ZNF428Q96B54 188 aa8.43□□□□□ -1.06
PTCH1-211ENST00000488809 CDC5LQ99459 802 aaKnown RBP8.43□□□□□ -1.06
PTCH1-211ENST00000488809 CFHR5Q9BXR6 569 aa8.43□□□□□ -1.06
PTCH1-211ENST00000488809 ASTN2O75129 1339 aaPredicted RBP8.43□□□□□ -1.06
PTCH1-211ENST00000488809 COL1A1P02452 1464 aaPredicted RBP8.43□□□□□ -1.06
PTCH1-211ENST00000488809 UBE2Q2LH0YL09 131 aa8.42□□□□□ -1.06
PTCH1-211ENST00000488809 DDX58O95786 925 aaKnown RBP8.42□□□□□ -1.06
PTCH1-211ENST00000488809 INHBEP58166 350 aa8.42□□□□□ -1.06
PTCH1-211ENST00000488809 RALBP1Q15311 655 aa8.42□□□□□ -1.06
PTCH1-211ENST00000488809 INTS3Q68E01 1043 aaKnown RBP8.42□□□□□ -1.06
PTCH1-211ENST00000488809 APOBEC3FQ8IUX4 373 aaKnown RBP8.42□□□□□ -1.06
PTCH1-211ENST00000488809 FBXW7Q969H0 707 aa8.42□□□□□ -1.06
PTCH1-211ENST00000488809 SEC31BQ9NQW1 1179 aa8.42□□□□□ -1.06
PTCH1-211ENST00000488809 MED23Q9ULK4 1368 aa8.42□□□□□ -1.06
PTCH1-211ENST00000488809 CACNA1FO60840 1977 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms