RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	LAMB2	P55268	1798 aa		11.49	□□□□□ -0.57
USP4-213	ENST00000488520	TMEM88B	A6NKF7	163 aa		11.49	□□□□□ -0.57
USP4-213	ENST00000488520	GOLGA8CP	A6NN73	597 aa		11.49	□□□□□ -0.57
USP4-213	ENST00000488520	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.49	□□□□□ -0.57
USP4-213	ENST00000488520	C7orf43	Q8WVR3	580 aa		11.49	□□□□□ -0.57
USP4-213	ENST00000488520	KCTD12	Q96CX2	325 aa	Known RBP	11.49	□□□□□ -0.57
USP4-213	ENST00000488520	PNN	Q9H307	717 aa	Known RBP	11.49	□□□□□ -0.57
USP4-213	ENST00000488520	KDM3B	Q7LBC6	1761 aa		11.49	□□□□□ -0.57
USP4-213	ENST00000488520	ITGBL1	O95965	494 aa	Predicted RBP	11.48	□□□□□ -0.57
USP4-213	ENST00000488520	NPR1	P16066	1061 aa		11.48	□□□□□ -0.57
USP4-213	ENST00000488520	PRKAR2B	P31323	418 aa		11.48	□□□□□ -0.57
USP4-213	ENST00000488520	CTCF	P49711	727 aa	Predicted RBP	11.48	□□□□□ -0.57
USP4-213	ENST00000488520	LBX1	P52954	281 aa		11.48	□□□□□ -0.57
USP4-213	ENST00000488520	WDR43	Q15061	677 aa	Known RBP eCLIP	11.48	□□□□□ -0.57
USP4-213	ENST00000488520	MAP1S	Q66K74	1059 aa	Predicted RBP	11.48	□□□□□ -0.57
USP4-213	ENST00000488520	HACL1	Q9UJ83	578 aa		11.48	□□□□□ -0.57
USP4-213	ENST00000488520	NIP7	Q9Y221	180 aa	Known RBP eCLIP	11.48	□□□□□ -0.57
USP4-213	ENST00000488520	RNF123	Q5XPI4	1314 aa		11.48	□□□□□ -0.57
USP4-213	ENST00000488520	CEMIP	Q8WUJ3	1361 aa		11.48	□□□□□ -0.57
USP4-213	ENST00000488520	EPHX2	P34913	555 aa		11.47	□□□□□ -0.57
USP4-213	ENST00000488520	PRSS12	P56730	875 aa		11.47	□□□□□ -0.57
USP4-213	ENST00000488520	TPTE2	Q6XPS3	522 aa		11.47	□□□□□ -0.57
USP4-213	ENST00000488520	MCM10	Q7L590	875 aa		11.47	□□□□□ -0.57
USP4-213	ENST00000488520	SYNE4	Q8N205	404 aa		11.47	□□□□□ -0.57
USP4-213	ENST00000488520	CDCA7L	Q96GN5	454 aa		11.47	□□□□□ -0.57
USP4-213	ENST00000488520	PRDM10	Q9NQV6	1147 aa		11.47	□□□□□ -0.57
USP4-213	ENST00000488520	ZNF652	Q9Y2D9	606 aa		11.47	□□□□□ -0.57
USP4-213	ENST00000488520	TESPA1	A2RU30	521 aa	Predicted RBP	11.46	□□□□□ -0.57
USP4-213	ENST00000488520	SNRPA1	P09661	255 aa	Known RBP	11.46	□□□□□ -0.57
USP4-213	ENST00000488520	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.46	□□□□□ -0.57
USP4-213	ENST00000488520	GTF2E1	P29083	439 aa	Predicted RBP	11.46	□□□□□ -0.57
USP4-213	ENST00000488520	IARS	P41252	1262 aa	Known RBP	11.46	□□□□□ -0.57
USP4-213	ENST00000488520	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.46	□□□□□ -0.57
USP4-213	ENST00000488520	DCTN1	Q14203	1278 aa		11.46	□□□□□ -0.57
USP4-213	ENST00000488520	DEFB115	Q30KQ5	88 aa		11.46	□□□□□ -0.57
USP4-213	ENST00000488520	CLEC4G	Q6UXB4	293 aa		11.46	□□□□□ -0.57
USP4-213	ENST00000488520	LAPTM4B	Q86VI4	370 aa		11.46	□□□□□ -0.57
USP4-213	ENST00000488520	PACS2	Q86VP3	889 aa		11.46	□□□□□ -0.57
USP4-213	ENST00000488520	CNTROB	Q8N137	903 aa		11.46	□□□□□ -0.57
USP4-213	ENST00000488520	RSPH6A	Q9H0K4	717 aa		11.46	□□□□□ -0.57
USP4-213	ENST00000488520	MRS2	Q9HD23	443 aa		11.46	□□□□□ -0.57
USP4-213	ENST00000488520	TSKS	Q9UJT2	592 aa		11.46	□□□□□ -0.57
USP4-213	ENST00000488520	COL4A5	P29400	1685 aa		11.46	□□□□□ -0.58
USP4-213	ENST00000488520	NBPF26	B4DH59	902 aa		11.45	□□□□□ -0.58
USP4-213	ENST00000488520	HLF	Q16534	295 aa		11.45	□□□□□ -0.58
USP4-213	ENST00000488520	NBPF10	Q6P3W6	841 aa	Known RBP	11.45	□□□□□ -0.58
USP4-213	ENST00000488520	RTKN2	Q8IZC4	609 aa		11.45	□□□□□ -0.58
USP4-213	ENST00000488520	NGEF	Q8N5V2	710 aa		11.45	□□□□□ -0.58
USP4-213	ENST00000488520	NBPF15	Q8N660	670 aa		11.45	□□□□□ -0.58
USP4-213	ENST00000488520	RTF1	Q92541	710 aa	Known RBP	11.45	□□□□□ -0.58
USP4-213	ENST00000488520	WBP1L	Q9NX94	342 aa		11.45	□□□□□ -0.58
USP4-213	ENST00000488520	RBM27	Q9P2N5	1060 aa	Known RBP	11.45	□□□□□ -0.58
USP4-213	ENST00000488520	HCST	Q9UBK5	93 aa		11.45	□□□□□ -0.58
USP4-213	ENST00000488520	GJA3	Q9Y6H8	435 aa		11.45	□□□□□ -0.58
USP4-213	ENST00000488520	ANKRD36C	Q5JPF3	1778 aa		11.45	□□□□□ -0.58
USP4-213	ENST00000488520	WDR33	Q9C0J8	1336 aa	Known RBP	11.44	□□□□□ -0.58
USP4-213	ENST00000488520	KLRG2	A4D1S0	409 aa	Predicted RBP	11.44	□□□□□ -0.58
USP4-213	ENST00000488520	ALDH1B1	P30837	517 aa		11.44	□□□□□ -0.58
USP4-213	ENST00000488520	FMR1	Q06787	632 aa	Known RBP eCLIP	11.44	□□□□□ -0.58
USP4-213	ENST00000488520	GRM1	Q13255	1194 aa		11.44	□□□□□ -0.58
USP4-213	ENST00000488520	ABT1	Q9ULW3	272 aa	Known RBP	11.44	□□□□□ -0.58
USP4-213	ENST00000488520	AKAP11	Q9UKA4	1901 aa		11.43	□□□□□ -0.58
USP4-213	ENST00000488520	FZD9	O00144	591 aa		11.43	□□□□□ -0.58
USP4-213	ENST00000488520	TCERG1	O14776	1098 aa	Known RBP	11.43	□□□□□ -0.58
USP4-213	ENST00000488520	HSPA8	P11142	646 aa	Known RBP	11.43	□□□□□ -0.58
USP4-213	ENST00000488520	SMYD5	Q6GMV2	418 aa		11.43	□□□□□ -0.58
USP4-213	ENST00000488520	PNMA8A	Q86V59	439 aa	Predicted RBP	11.43	□□□□□ -0.58
USP4-213	ENST00000488520	NUTM1	Q86Y26	1132 aa		11.43	□□□□□ -0.58
USP4-213	ENST00000488520	JDP2	Q8WYK2	163 aa		11.43	□□□□□ -0.58
USP4-213	ENST00000488520	WNT2B	Q93097	391 aa		11.43	□□□□□ -0.58
USP4-213	ENST00000488520	NPDC1	Q9NQX5	325 aa	Predicted RBP	11.43	□□□□□ -0.58
USP4-213	ENST00000488520	MIS18A	Q9NYP9	233 aa		11.43	□□□□□ -0.58
USP4-213	ENST00000488520	SEPT9	Q9UHD8	586 aa	Predicted RBP	11.43	□□□□□ -0.58
USP4-213	ENST00000488520	ABCC12	Q96J65	1359 aa		11.42	□□□□□ -0.58
USP4-213	ENST00000488520	THSD7B	Q9C0I4	1608 aa		11.42	□□□□□ -0.58
USP4-213	ENST00000488520	RASSF10	A6NK89	507 aa		11.42	□□□□□ -0.58
USP4-213	ENST00000488520	CCER2	I3L3R5	266 aa		11.42	□□□□□ -0.58
USP4-213	ENST00000488520	EIF6	P56537	245 aa	Known RBP	11.42	□□□□□ -0.58
USP4-213	ENST00000488520	SLC51A	Q86UW1	340 aa		11.42	□□□□□ -0.58
USP4-213	ENST00000488520	GPC2	Q8N158	579 aa		11.42	□□□□□ -0.58
USP4-213	ENST00000488520	FAM198A	Q9UFP1	575 aa		11.42	□□□□□ -0.58
USP4-213	ENST00000488520	LMOD1	P29536	600 aa	Predicted RBP	11.41	□□□□□ -0.58
USP4-213	ENST00000488520	EPS15	P42566	896 aa		11.41	□□□□□ -0.58
USP4-213	ENST00000488520	THSD4	Q6ZMP0	1018 aa		11.41	□□□□□ -0.58
USP4-213	ENST00000488520	ABHD8	Q96I13	439 aa		11.41	□□□□□ -0.58
USP4-213	ENST00000488520	RRP7A	Q9Y3A4	280 aa	Known RBP	11.41	□□□□□ -0.58
USP4-213	ENST00000488520	SNED1	Q8TER0	1413 aa		11.41	□□□□□ -0.58
USP4-213	ENST00000488520	GPT	P24298	496 aa		11.4	□□□□□ -0.58
USP4-213	ENST00000488520	MAP2K1	Q02750	393 aa	Predicted RBP	11.4	□□□□□ -0.58
USP4-213	ENST00000488520	CYP4F22	Q6NT55	531 aa		11.4	□□□□□ -0.58
USP4-213	ENST00000488520	FAM9B	Q8IZU0	186 aa		11.4	□□□□□ -0.58
USP4-213	ENST00000488520	LARGE2	Q8N3Y3	721 aa		11.4	□□□□□ -0.58
USP4-213	ENST00000488520	ANKK1	Q8NFD2	765 aa		11.4	□□□□□ -0.58
USP4-213	ENST00000488520	RPGR	Q92834	1020 aa	Known RBP	11.4	□□□□□ -0.58
USP4-213	ENST00000488520	PSMD1	Q99460	953 aa		11.4	□□□□□ -0.58
USP4-213	ENST00000488520	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.4	□□□□□ -0.58
USP4-213	ENST00000488520	MAPK8IP3	Q9UPT6	1336 aa		11.39	□□□□□ -0.59
USP4-213	ENST00000488520	TRAF5	O00463	557 aa		11.39	□□□□□ -0.59
USP4-213	ENST00000488520	MYL6B	P14649	208 aa		11.39	□□□□□ -0.59
USP4-213	ENST00000488520	TAF7	Q15545	349 aa	Predicted RBP	11.39	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms