RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 RTL9Q8NET4 1388 aa12.22□□□□□ -0.45
COL17A1-207ENST00000488320 VIL1P09327 827 aaKnown RBP12.22□□□□□ -0.45
COL17A1-207ENST00000488320 GPSM2P81274 684 aa12.22□□□□□ -0.45
COL17A1-207ENST00000488320 ZNF428Q96B54 188 aa12.22□□□□□ -0.45
COL17A1-207ENST00000488320 CLSPNQ9HAW4 1339 aa12.21□□□□□ -0.45
COL17A1-207ENST00000488320 ANXA1P04083 346 aa12.21□□□□□ -0.45
COL17A1-207ENST00000488320 SREBF2Q12772 1141 aa12.21□□□□□ -0.45
COL17A1-207ENST00000488320 NOM1Q5C9Z4 860 aaKnown RBP12.21□□□□□ -0.45
COL17A1-207ENST00000488320 INTS3Q68E01 1043 aaKnown RBP12.21□□□□□ -0.45
COL17A1-207ENST00000488320 COPS6Q7L5N1 327 aa12.21□□□□□ -0.45
COL17A1-207ENST00000488320 CELF1Q92879 486 aaKnown RBP12.21□□□□□ -0.45
COL17A1-207ENST00000488320 SCAF8Q9UPN6 1271 aaKnown RBP12.21□□□□□ -0.45
COL17A1-207ENST00000488320 KDM3BQ7LBC6 1761 aa12.2□□□□□ -0.46
COL17A1-207ENST00000488320 POTEFA5A3E0 1075 aa12.2□□□□□ -0.46
COL17A1-207ENST00000488320 NF2P35240 595 aa12.2□□□□□ -0.46
COL17A1-207ENST00000488320 FXR1P51114 621 aaKnown RBP eCLIP12.2□□□□□ -0.46
COL17A1-207ENST00000488320 TRIM26Q12899 539 aaPredicted RBP12.2□□□□□ -0.46
COL17A1-207ENST00000488320 TCIRG1Q13488 830 aa12.2□□□□□ -0.46
COL17A1-207ENST00000488320 PRAMEF18Q5VWM3 479 aa12.2□□□□□ -0.46
COL17A1-207ENST00000488320 AGBL3Q8NEM8 1001 aa12.2□□□□□ -0.46
COL17A1-207ENST00000488320 TBC1D16Q8TBP0 767 aa12.2□□□□□ -0.46
COL17A1-207ENST00000488320 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.2□□□□□ -0.46
COL17A1-207ENST00000488320 TRIM17Q9Y577 477 aa12.2□□□□□ -0.46
COL17A1-207ENST00000488320 DUOX1Q9NRD9 1551 aa12.2□□□□□ -0.46
COL17A1-207ENST00000488320 PAPPA2Q9BXP8 1791 aa12.2□□□□□ -0.46
COL17A1-207ENST00000488320 PDIA6Q15084 440 aa12.19□□□□□ -0.46
COL17A1-207ENST00000488320 RSBN1LQ6PCB5 846 aaPredicted RBP12.19□□□□□ -0.46
COL17A1-207ENST00000488320 XAGE3Q8WTP9 111 aa12.19□□□□□ -0.46
COL17A1-207ENST00000488320 NECTIN2Q92692 538 aa12.19□□□□□ -0.46
COL17A1-207ENST00000488320 MYOZ2Q9NPC6 264 aa12.19□□□□□ -0.46
COL17A1-207ENST00000488320 ANKIB1Q9P2G1 1089 aa12.19□□□□□ -0.46
COL17A1-207ENST00000488320 TSPYL4Q9UJ04 414 aa12.19□□□□□ -0.46
COL17A1-207ENST00000488320 DDX60Q8IY21 1712 aaKnown RBP12.18□□□□□ -0.46
COL17A1-207ENST00000488320 DLG5Q8TDM6 1919 aa12.18□□□□□ -0.46
COL17A1-207ENST00000488320 USP17L8P0C7I0 530 aa12.18□□□□□ -0.46
COL17A1-207ENST00000488320 ZNF280AP59817 542 aaPredicted RBP12.18□□□□□ -0.46
COL17A1-207ENST00000488320 PRKG1Q13976 671 aa12.18□□□□□ -0.46
COL17A1-207ENST00000488320 PROSER3Q2NL68 480 aa12.18□□□□□ -0.46
COL17A1-207ENST00000488320 R3HDMLQ9H3Y0 253 aa12.18□□□□□ -0.46
COL17A1-207ENST00000488320 PITPNM2Q9BZ72 1349 aa12.17□□□□□ -0.46
COL17A1-207ENST00000488320 UFL1O94874 794 aa12.17□□□□□ -0.46
COL17A1-207ENST00000488320 ALDH1A1P00352 501 aa12.17□□□□□ -0.46
COL17A1-207ENST00000488320 RPS8P62241 208 aaKnown RBP12.17□□□□□ -0.46
COL17A1-207ENST00000488320 SF3B3Q15393 1217 aaKnown RBP12.17□□□□□ -0.46
COL17A1-207ENST00000488320 RTL5Q5HYW3 569 aaPredicted RBP12.17□□□□□ -0.46
COL17A1-207ENST00000488320 ARMC9Q7Z3E5 817 aa12.17□□□□□ -0.46
COL17A1-207ENST00000488320 LRP10Q7Z4F1 713 aa12.17□□□□□ -0.46
COL17A1-207ENST00000488320 FAM89AQ96GI7 184 aa12.17□□□□□ -0.46
COL17A1-207ENST00000488320 LRRC37AA6NMS7 1700 aa12.17□□□□□ -0.46
COL17A1-207ENST00000488320 EN2P19622 333 aaPredicted RBP12.16□□□□□ -0.46
COL17A1-207ENST00000488320 PPP2R1AP30153 589 aa12.16□□□□□ -0.46
COL17A1-207ENST00000488320 NFE2L2Q16236 605 aa12.16□□□□□ -0.46
COL17A1-207ENST00000488320 OTOP1Q7RTM1 612 aa12.16□□□□□ -0.46
COL17A1-207ENST00000488320 TMEM106CQ9BVX2 250 aa12.16□□□□□ -0.46
COL17A1-207ENST00000488320 CFHR5Q9BXR6 569 aa12.16□□□□□ -0.46
COL17A1-207ENST00000488320 GGA1Q9UJY5 639 aa12.16□□□□□ -0.46
COL17A1-207ENST00000488320 COLQQ9Y215 455 aaPredicted RBP12.16□□□□□ -0.46
COL17A1-207ENST00000488320 SCN9AQ15858 1988 aa12.16□□□□□ -0.46
COL17A1-207ENST00000488320 PTPN12Q05209 780 aaKnown RBP12.15□□□□□ -0.46
COL17A1-207ENST00000488320 NBPF9Q3BBW0 867 aa12.15□□□□□ -0.46
COL17A1-207ENST00000488320 USP17L3A6NCW0 530 aa12.14□□□□□ -0.47
COL17A1-207ENST00000488320 USP17L4A6NCW7 530 aa12.14□□□□□ -0.47
COL17A1-207ENST00000488320 ATP5J2-PTCD1G3V325 749 aa12.14□□□□□ -0.47
COL17A1-207ENST00000488320 INHBEP58166 350 aa12.14□□□□□ -0.47
COL17A1-207ENST00000488320 USP17L1Q7RTZ2 530 aa12.14□□□□□ -0.47
COL17A1-207ENST00000488320 OGFOD1Q8N543 542 aa12.14□□□□□ -0.47
COL17A1-207ENST00000488320 FBXW7Q969H0 707 aa12.14□□□□□ -0.47
COL17A1-207ENST00000488320 ERO1AQ96HE7 468 aa12.14□□□□□ -0.47
COL17A1-207ENST00000488320 PODXL2Q9NZ53 605 aa12.14□□□□□ -0.47
COL17A1-207ENST00000488320 PTPN22Q9Y2R2 807 aa12.14□□□□□ -0.47
COL17A1-207ENST00000488320 MANSC4A6NHS7 340 aaPredicted RBP12.13□□□□□ -0.47
COL17A1-207ENST00000488320 DLL1O00548 723 aa12.13□□□□□ -0.47
COL17A1-207ENST00000488320 IRS4O14654 1257 aaPredicted RBP12.13□□□□□ -0.47
COL17A1-207ENST00000488320 SPRYD7Q5W111 196 aa12.13□□□□□ -0.47
COL17A1-207ENST00000488320 SLC10A4Q96EP9 437 aa12.13□□□□□ -0.47
COL17A1-207ENST00000488320 GMLQ99445 158 aa12.13□□□□□ -0.47
COL17A1-207ENST00000488320 PNNQ9H307 717 aaKnown RBP12.13□□□□□ -0.47
COL17A1-207ENST00000488320 ANGEL1Q9UNK9 670 aaKnown RBP12.13□□□□□ -0.47
COL17A1-207ENST00000488320 MAPK8IP3Q9UPT6 1336 aa12.12□□□□□ -0.47
COL17A1-207ENST00000488320 ANKRD13DQ6ZTN6 518 aa12.12□□□□□ -0.47
COL17A1-207ENST00000488320 PODNQ7Z5L7 613 aa12.12□□□□□ -0.47
COL17A1-207ENST00000488320 IFNL1Q8IU54 200 aa12.12□□□□□ -0.47
COL17A1-207ENST00000488320 CD99L2Q8TCZ2 262 aa12.12□□□□□ -0.47
COL17A1-207ENST00000488320 EFCC1Q9HA90 598 aa12.12□□□□□ -0.47
COL17A1-207ENST00000488320 SEC31BQ9NQW1 1179 aa12.12□□□□□ -0.47
COL17A1-207ENST00000488320 MKI67P46013 3256 aaKnown RBP12.12□□□□□ -0.47
COL17A1-207ENST00000488320 OTUD7BQ6GQQ9 843 aa12.11□□□□□ -0.47
COL17A1-207ENST00000488320 SLC17A8Q8NDX2 589 aa12.11□□□□□ -0.47
COL17A1-207ENST00000488320 PLBD2Q8NHP8 589 aa12.11□□□□□ -0.47
COL17A1-207ENST00000488320 ISCA1Q9BUE6 129 aa12.11□□□□□ -0.47
COL17A1-207ENST00000488320 KIAA0100Q14667 2235 aaKnown RBP12.11□□□□□ -0.47
COL17A1-207ENST00000488320 WNT10BO00744 389 aa12.1□□□□□ -0.47
COL17A1-207ENST00000488320 HSP90B1P14625 803 aaKnown RBP12.1□□□□□ -0.47
COL17A1-207ENST00000488320 ATP2B4P23634 1241 aa12.1□□□□□ -0.47
COL17A1-207ENST00000488320 SLC4A8Q2Y0W8 1093 aa12.1□□□□□ -0.47
COL17A1-207ENST00000488320 NBPF11Q86T75 865 aa12.1□□□□□ -0.47
COL17A1-207ENST00000488320 ARMC5Q96C12 935 aa12.1□□□□□ -0.47
COL17A1-207ENST00000488320 PLEKHF1Q96S99 279 aa12.1□□□□□ -0.47
COL17A1-207ENST00000488320 RIPK4P57078 832 aa12.09□□□□□ -0.47
COL17A1-207ENST00000488320 SP3Q02447 781 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms