RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 USP17L11C9JVI0 530 aa8.07□□□□□ -1.12
SMC4-220ENST00000488017 USP17L21D6R901 530 aa8.07□□□□□ -1.12
SMC4-220ENST00000488017 USP17L18D6R9N7 530 aa8.07□□□□□ -1.12
SMC4-220ENST00000488017 USP17L22D6RA61 530 aa8.07□□□□□ -1.12
SMC4-220ENST00000488017 USP17L17D6RBQ6 530 aa8.07□□□□□ -1.12
SMC4-220ENST00000488017 USP17L19D6RCP7 530 aa8.07□□□□□ -1.12
SMC4-220ENST00000488017 USP17L20D6RJB6 530 aa8.07□□□□□ -1.12
SMC4-220ENST00000488017 ALX3O95076 343 aa8.07□□□□□ -1.12
SMC4-220ENST00000488017 GHRHP01286 108 aa8.07□□□□□ -1.12
SMC4-220ENST00000488017 PSAPP07602 524 aa8.07□□□□□ -1.12
SMC4-220ENST00000488017 WEE1P30291 646 aa8.07□□□□□ -1.12
SMC4-220ENST00000488017 SOX18P35713 384 aa8.07□□□□□ -1.12
SMC4-220ENST00000488017 GRIK1P39086 918 aa8.07□□□□□ -1.12
SMC4-220ENST00000488017 USP17L24Q0WX57 530 aa8.07□□□□□ -1.12
SMC4-220ENST00000488017 ZDHHC13Q8IUH4 622 aa8.07□□□□□ -1.12
SMC4-220ENST00000488017 IL22RA1Q8N6P7 574 aa8.07□□□□□ -1.12
SMC4-220ENST00000488017 RBSNQ9H1K0 784 aa8.07□□□□□ -1.12
SMC4-220ENST00000488017 XYLBO75191 536 aa8.06□□□□□ -1.12
SMC4-220ENST00000488017 LGR5O75473 907 aa8.06□□□□□ -1.12
SMC4-220ENST00000488017 OGFOD2Q6N063 350 aa8.06□□□□□ -1.12
SMC4-220ENST00000488017 MUC3BQ9H195 1237 aa8.06□□□□□ -1.12
SMC4-220ENST00000488017 WNT11O96014 354 aa8.05□□□□□ -1.12
SMC4-220ENST00000488017 SETDB1Q15047 1291 aa8.05□□□□□ -1.12
SMC4-220ENST00000488017 GDF6Q6KF10 455 aaPredicted RBP8.05□□□□□ -1.12
SMC4-220ENST00000488017 KRTAP4-5Q9BYR2 181 aa8.05□□□□□ -1.12
SMC4-220ENST00000488017 STOML1Q9UBI4 398 aa8.05□□□□□ -1.12
SMC4-220ENST00000488017 J3QW42 95 aa8.04□□□□□ -1.12
SMC4-220ENST00000488017 PPP1R12CQ9BZL4 782 aa8.04□□□□□ -1.12
SMC4-220ENST00000488017 MMP20O60882 483 aa8.03□□□□□ -1.12
SMC4-220ENST00000488017 C8AP07357 584 aa8.03□□□□□ -1.12
SMC4-220ENST00000488017 GLB1P16278 677 aa8.03□□□□□ -1.12
SMC4-220ENST00000488017 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.03□□□□□ -1.12
SMC4-220ENST00000488017 TREML1Q86YW5 311 aa8.03□□□□□ -1.12
SMC4-220ENST00000488017 CMTR1Q8N1G2 835 aaKnown RBP8.03□□□□□ -1.12
SMC4-220ENST00000488017 FNBP4Q8N3X1 1017 aaPredicted RBP8.03□□□□□ -1.12
SMC4-220ENST00000488017 ARXQ96QS3 562 aa8.03□□□□□ -1.12
SMC4-220ENST00000488017 VRTNQ9H8Y1 702 aa8.03□□□□□ -1.12
SMC4-220ENST00000488017 RGL4Q8IZJ4 473 aa8.02□□□□□ -1.13
SMC4-220ENST00000488017 POU5F2Q8N7G0 328 aa8.02□□□□□ -1.13
SMC4-220ENST00000488017 NSUN5Q96P11 429 aaKnown RBP8.02□□□□□ -1.13
SMC4-220ENST00000488017 LRFN2Q9ULH4 789 aa8.02□□□□□ -1.13
SMC4-220ENST00000488017 USP20Q9Y2K6 914 aa8.02□□□□□ -1.13
SMC4-220ENST00000488017 KCNMB2Q9Y691 235 aa8.02□□□□□ -1.13
SMC4-220ENST00000488017 PROSER2Q86WR7 435 aaPredicted RBP8.01□□□□□ -1.13
SMC4-220ENST00000488017 AGGF1Q8N302 714 aaeCLIP8.01□□□□□ -1.13
SMC4-220ENST00000488017 PPME1Q9Y570 386 aa8.01□□□□□ -1.13
SMC4-220ENST00000488017 PRR19A6NJB7 356 aa8□□□□□ -1.13
SMC4-220ENST00000488017 DHX15O43143 795 aaKnown RBP8□□□□□ -1.13
SMC4-220ENST00000488017 NFIAQ12857 509 aa8□□□□□ -1.13
SMC4-220ENST00000488017 UBL7Q96S82 380 aaPredicted RBP8□□□□□ -1.13
SMC4-220ENST00000488017 CEP41Q9BYV8 373 aa8□□□□□ -1.13
SMC4-220ENST00000488017 TRIM33Q9UPN9 1127 aa8□□□□□ -1.13
SMC4-220ENST00000488017 UVSSAQ2YD98 709 aa7.99□□□□□ -1.13
SMC4-220ENST00000488017 NLRP13Q86W25 1043 aa7.99□□□□□ -1.13
SMC4-220ENST00000488017 CALR3Q96L12 384 aaKnown RBP7.98□□□□□ -1.13
SMC4-220ENST00000488017 CD68P34810 354 aaPredicted RBP7.97□□□□□ -1.13
SMC4-220ENST00000488017 COX20Q5RI15 118 aa7.97□□□□□ -1.13
SMC4-220ENST00000488017 ARMC10Q8N2F6 343 aa7.97□□□□□ -1.13
SMC4-220ENST00000488017 GALNT11Q8NCW6 608 aa7.97□□□□□ -1.13
SMC4-220ENST00000488017 FAM200AQ8TCP9 573 aa7.97□□□□□ -1.13
SMC4-220ENST00000488017 LMOD1P29536 600 aaPredicted RBP7.96□□□□□ -1.14
SMC4-220ENST00000488017 RNF43Q68DV7 783 aa7.96□□□□□ -1.14
SMC4-220ENST00000488017 OR13H1Q8NG92 308 aa7.96□□□□□ -1.14
SMC4-220ENST00000488017 CLUAP1Q96AJ1 413 aa7.96□□□□□ -1.14
SMC4-220ENST00000488017 DBNDD2Q9BQY9 259 aa7.96□□□□□ -1.14
SMC4-220ENST00000488017 LINC01387J3KSC0 135 aa7.95□□□□□ -1.14
SMC4-220ENST00000488017 ACAD11Q709F0 780 aa7.95□□□□□ -1.14
SMC4-220ENST00000488017 ABI1Q8IZP0 508 aa7.95□□□□□ -1.14
SMC4-220ENST00000488017 FAM13BQ9NYF5 915 aa7.95□□□□□ -1.14
SMC4-220ENST00000488017 WISP1O95388 367 aa7.94□□□□□ -1.14
SMC4-220ENST00000488017 BRD2P25440 801 aaKnown RBP7.94□□□□□ -1.14
SMC4-220ENST00000488017 CDC27P30260 824 aa7.94□□□□□ -1.14
SMC4-220ENST00000488017 HYAL2Q12891 473 aa7.94□□□□□ -1.14
SMC4-220ENST00000488017 TRIP4Q15650 581 aaPredicted RBP7.94□□□□□ -1.14
SMC4-220ENST00000488017 KLHL23Q8NBE8 558 aa7.94□□□□□ -1.14
SMC4-220ENST00000488017 UTP4Q969X6 686 aaKnown RBP7.94□□□□□ -1.14
SMC4-220ENST00000488017 ASIC4Q96FT7 647 aa7.94□□□□□ -1.14
SMC4-220ENST00000488017 FAM46AQ96IP4 442 aaKnown RBP7.94□□□□□ -1.14
SMC4-220ENST00000488017 SPACA7Q96KW9 195 aa7.94□□□□□ -1.14
SMC4-220ENST00000488017 C7orf69Q9H7B7 122 aa7.94□□□□□ -1.14
SMC4-220ENST00000488017 TM4SF5O14894 197 aa7.93□□□□□ -1.14
SMC4-220ENST00000488017 SMNDC1O75940 238 aaKnown RBP eCLIP7.93□□□□□ -1.14
SMC4-220ENST00000488017 FKBP5Q13451 457 aaPredicted RBP7.93□□□□□ -1.14
SMC4-220ENST00000488017 ETFBKMTQ8IXQ9 262 aa7.93□□□□□ -1.14
SMC4-220ENST00000488017 KRTAP17-1Q9BYP8 105 aa7.93□□□□□ -1.14
SMC4-220ENST00000488017 CEP135Q66GS9 1140 aa7.92□□□□□ -1.14
SMC4-220ENST00000488017 FAM117BQ6P1L5 589 aa7.92□□□□□ -1.14
SMC4-220ENST00000488017 TRIM42Q8IWZ5 723 aa7.92□□□□□ -1.14
SMC4-220ENST00000488017 PIK3R5Q8WYR1 880 aa7.92□□□□□ -1.14
SMC4-220ENST00000488017 MYRFLQ96LU7 910 aa7.92□□□□□ -1.14
SMC4-220ENST00000488017 UBAP1LF5GYI3 381 aa7.91□□□□□ -1.14
SMC4-220ENST00000488017 SWI5Q1ZZU3 235 aa7.91□□□□□ -1.14
SMC4-220ENST00000488017 FBLN7Q53RD9 439 aa7.91□□□□□ -1.14
SMC4-220ENST00000488017 KIAA1211Q6ZU35 1233 aa7.91□□□□□ -1.14
SMC4-220ENST00000488017 CLEC10AQ8IUN9 316 aa7.91□□□□□ -1.14
SMC4-220ENST00000488017 COL26A1Q96A83 441 aa7.91□□□□□ -1.14
SMC4-220ENST00000488017 KCNK4Q9NYG8 393 aa7.91□□□□□ -1.14
SMC4-220ENST00000488017 HMX2A2RU54 273 aa7.9□□□□□ -1.14
SMC4-220ENST00000488017 FSCN2O14926 492 aa7.9□□□□□ -1.14
SMC4-220ENST00000488017 ATP11AP98196 1134 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms