RNA–Protein interactions for RNA: ENST00000487620.1

ZNF3-215, Transcript of zinc finger protein 3, human

TSL 2

Gene ZNF3, Length 2,660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF3-215	ENST00000487620	NCAPD2	Q15021	1401 aa		11.51	□□□□□ -0.57
ZNF3-215	ENST00000487620	UTP14C	Q5TAP6	766 aa	Known RBP	11.51	□□□□□ -0.57
ZNF3-215	ENST00000487620	CCDC112	Q8NEF3	446 aa		11.51	□□□□□ -0.57
ZNF3-215	ENST00000487620	NAP1L2	Q9ULW6	460 aa	Predicted RBP	11.51	□□□□□ -0.57
ZNF3-215	ENST00000487620	ZNF609	O15014	1411 aa		11.5	□□□□□ -0.57
ZNF3-215	ENST00000487620	ATP5J	P18859	108 aa		11.5	□□□□□ -0.57
ZNF3-215	ENST00000487620	ARID5B	Q14865	1188 aa		11.5	□□□□□ -0.57
ZNF3-215	ENST00000487620	TNNI3K	Q59H18	835 aa		11.5	□□□□□ -0.57
ZNF3-215	ENST00000487620	DDX46	Q7L014	1031 aa	Known RBP	11.5	□□□□□ -0.57
ZNF3-215	ENST00000487620	CCAR1	Q8IX12	1150 aa	Known RBP	11.5	□□□□□ -0.57
ZNF3-215	ENST00000487620	ANKRD24	Q8TF21	1146 aa		11.5	□□□□□ -0.57
ZNF3-215	ENST00000487620	XAGE3	Q8WTP9	111 aa		11.5	□□□□□ -0.57
ZNF3-215	ENST00000487620	FBXW7	Q969H0	707 aa		11.5	□□□□□ -0.57
ZNF3-215	ENST00000487620		U3KPZ7	1027 aa	Predicted RBP	11.5	□□□□□ -0.57
ZNF3-215	ENST00000487620	FPGT-TNNI3K	V9GXZ4	949 aa		11.5	□□□□□ -0.57
ZNF3-215	ENST00000487620	MYH15	Q9Y2K3	1946 aa		11.5	□□□□□ -0.57
ZNF3-215	ENST00000487620	BECN2	A8MW95	431 aa		11.5	□□□□□ -0.57
ZNF3-215	ENST00000487620	PIP4K2A	P48426	406 aa	Predicted RBP	11.5	□□□□□ -0.57
ZNF3-215	ENST00000487620	COPS6	Q7L5N1	327 aa		11.5	□□□□□ -0.57
ZNF3-215	ENST00000487620	GC	P02774	474 aa		11.49	□□□□□ -0.57
ZNF3-215	ENST00000487620	CCT2	P78371	535 aa	Known RBP	11.49	□□□□□ -0.57
ZNF3-215	ENST00000487620	IQCB1	Q15051	598 aa		11.49	□□□□□ -0.57
ZNF3-215	ENST00000487620	MCMDC2	Q4G0Z9	681 aa		11.49	□□□□□ -0.57
ZNF3-215	ENST00000487620	LRRC8A	Q8IWT6	810 aa		11.49	□□□□□ -0.57
ZNF3-215	ENST00000487620	PAXBP1	Q9Y5B6	917 aa		11.49	□□□□□ -0.57
ZNF3-215	ENST00000487620	LAMA4	Q16363	1823 aa		11.49	□□□□□ -0.57
ZNF3-215	ENST00000487620	CAVIN2	O95810	425 aa		11.49	□□□□□ -0.57
ZNF3-215	ENST00000487620	APOBR	Q0VD83	1088 aa		11.49	□□□□□ -0.57
ZNF3-215	ENST00000487620	STX1A	Q16623	288 aa		11.49	□□□□□ -0.57
ZNF3-215	ENST00000487620	CEP135	Q66GS9	1140 aa		11.49	□□□□□ -0.57
ZNF3-215	ENST00000487620	FILIP1	Q7Z7B0	1213 aa		11.49	□□□□□ -0.57
ZNF3-215	ENST00000487620	ERCC4	Q92889	916 aa	Predicted RBP	11.49	□□□□□ -0.57
ZNF3-215	ENST00000487620	DBNDD2	Q9BQY9	259 aa		11.49	□□□□□ -0.57
ZNF3-215	ENST00000487620	GOLPH3L	Q9H4A5	285 aa		11.49	□□□□□ -0.57
ZNF3-215	ENST00000487620	USP27X	A6NNY8	438 aa		11.48	□□□□□ -0.57
ZNF3-215	ENST00000487620	IGSF3	O75054	1194 aa		11.48	□□□□□ -0.57
ZNF3-215	ENST00000487620	GUCY1B3	Q02153	619 aa		11.48	□□□□□ -0.57
ZNF3-215	ENST00000487620	ZNF790	Q6PG37	636 aa		11.48	□□□□□ -0.57
ZNF3-215	ENST00000487620	AEBP2	Q6ZN18	517 aa	Predicted RBP	11.48	□□□□□ -0.57
ZNF3-215	ENST00000487620	CCDC73	Q6ZRK6	1079 aa		11.48	□□□□□ -0.57
ZNF3-215	ENST00000487620	UBE3B	Q7Z3V4	1068 aa		11.48	□□□□□ -0.57
ZNF3-215	ENST00000487620	GTPBP4	Q9BZE4	634 aa	Known RBP	11.48	□□□□□ -0.57
ZNF3-215	ENST00000487620	USP16	Q9Y5T5	823 aa		11.48	□□□□□ -0.57
ZNF3-215	ENST00000487620	SIPA1L3	O60292	1781 aa	Predicted RBP	11.48	□□□□□ -0.57
ZNF3-215	ENST00000487620	PTPDC1	A2A3K4	754 aa		11.48	□□□□□ -0.57
ZNF3-215	ENST00000487620	KIN	O60870	393 aa	Known RBP	11.48	□□□□□ -0.57
ZNF3-215	ENST00000487620	CDC25B	P30305	580 aa		11.48	□□□□□ -0.57
ZNF3-215	ENST00000487620	PTPN12	Q05209	780 aa	Known RBP	11.48	□□□□□ -0.57
ZNF3-215	ENST00000487620	SLFNL1	Q499Z3	407 aa		11.48	□□□□□ -0.57
ZNF3-215	ENST00000487620	STOX1	Q6ZVD7	989 aa		11.48	□□□□□ -0.57
ZNF3-215	ENST00000487620	METTL22	Q9BUU2	404 aa	Predicted RBP	11.48	□□□□□ -0.57
ZNF3-215	ENST00000487620	COPRS	Q9NQ92	184 aa		11.48	□□□□□ -0.57
ZNF3-215	ENST00000487620	SKIL	P12757	684 aa		11.47	□□□□□ -0.57
ZNF3-215	ENST00000487620	ADD1	P35611	737 aa	Known RBP	11.47	□□□□□ -0.57
ZNF3-215	ENST00000487620	ME1	P48163	572 aa		11.47	□□□□□ -0.57
ZNF3-215	ENST00000487620	ARHGEF25	Q86VW2	580 aa		11.47	□□□□□ -0.57
ZNF3-215	ENST00000487620	NSUN7	Q8NE18	718 aa	Known RBP	11.47	□□□□□ -0.57
ZNF3-215	ENST00000487620	SMARCC2	Q8TAQ2	1214 aa		11.47	□□□□□ -0.57
ZNF3-215	ENST00000487620	USP28	Q96RU2	1077 aa		11.47	□□□□□ -0.57
ZNF3-215	ENST00000487620	NCOA5	Q9HCD5	579 aa	Known RBP	11.47	□□□□□ -0.57
ZNF3-215	ENST00000487620	C5	P01031	1676 aa		11.47	□□□□□ -0.57
ZNF3-215	ENST00000487620	OVOS2	A0A0G2JMS6	1433 aa		11.47	□□□□□ -0.57
ZNF3-215	ENST00000487620	MRC1	P22897	1456 aa		11.47	□□□□□ -0.57
ZNF3-215	ENST00000487620	AFDN	P55196	1824 aa	Known RBP	11.47	□□□□□ -0.57
ZNF3-215	ENST00000487620	CTAGE5	O15320	804 aa		11.47	□□□□□ -0.57
ZNF3-215	ENST00000487620	PFKFB2	O60825	505 aa		11.47	□□□□□ -0.57
ZNF3-215	ENST00000487620	SARM1	Q6SZW1	724 aa		11.47	□□□□□ -0.57
ZNF3-215	ENST00000487620	ANKRD13D	Q6ZTN6	518 aa		11.47	□□□□□ -0.57
ZNF3-215	ENST00000487620	MRFAP1L1	Q96HT8	127 aa		11.47	□□□□□ -0.57
ZNF3-215	ENST00000487620	FEZ1	Q99689	392 aa		11.47	□□□□□ -0.57
ZNF3-215	ENST00000487620	AXIN2	Q9Y2T1	843 aa		11.47	□□□□□ -0.57
ZNF3-215	ENST00000487620	ATP5J2-PTCD1	G3V325	749 aa		11.46	□□□□□ -0.57
ZNF3-215	ENST00000487620	PTCD1	O75127	700 aa	Known RBP	11.46	□□□□□ -0.57
ZNF3-215	ENST00000487620	CTDNEP1	O95476	244 aa		11.46	□□□□□ -0.57
ZNF3-215	ENST00000487620	SNW1	Q13573	536 aa	Known RBP	11.46	□□□□□ -0.57
ZNF3-215	ENST00000487620	PTPN14	Q15678	1187 aa		11.46	□□□□□ -0.57
ZNF3-215	ENST00000487620	DHX32	Q7L7V1	743 aa	Known RBP	11.46	□□□□□ -0.57
ZNF3-215	ENST00000487620	TRMT1	Q9NXH9	659 aa	Known RBP	11.46	□□□□□ -0.57
ZNF3-215	ENST00000487620	RCOR1	Q9UKL0	485 aa		11.46	□□□□□ -0.57
ZNF3-215	ENST00000487620	CCDC69	A6NI79	296 aa		11.46	□□□□□ -0.58
ZNF3-215	ENST00000487620	RFX5	P48382	616 aa	Predicted RBP	11.46	□□□□□ -0.58
ZNF3-215	ENST00000487620	SYCP1	Q15431	976 aa		11.46	□□□□□ -0.58
ZNF3-215	ENST00000487620	CHST3	Q7LGC8	479 aa		11.46	□□□□□ -0.58
ZNF3-215	ENST00000487620	FSIP1	Q8NA03	581 aa		11.46	□□□□□ -0.58
ZNF3-215	ENST00000487620	NFATC2IP	Q8NCF5	419 aa		11.46	□□□□□ -0.58
ZNF3-215	ENST00000487620	NEUROD6	Q96NK8	337 aa		11.46	□□□□□ -0.58
ZNF3-215	ENST00000487620	HAUS7	Q99871	368 aa		11.46	□□□□□ -0.58
ZNF3-215	ENST00000487620	LLPH	Q9BRT6	129 aa	Known RBP	11.46	□□□□□ -0.58
ZNF3-215	ENST00000487620	CGN	Q9P2M7	1197 aa	Known RBP	11.46	□□□□□ -0.58
ZNF3-215	ENST00000487620	GOLIM4	O00461	696 aa		11.45	□□□□□ -0.58
ZNF3-215	ENST00000487620	HMGB1	P09429	215 aa	Known RBP	11.45	□□□□□ -0.58
ZNF3-215	ENST00000487620	FAM160A1	Q05DH4	1040 aa		11.45	□□□□□ -0.58
ZNF3-215	ENST00000487620	NAA16	Q6N069	864 aa	Predicted RBP	11.45	□□□□□ -0.58
ZNF3-215	ENST00000487620	DHX40	Q8IX18	779 aa	Known RBP	11.45	□□□□□ -0.58
ZNF3-215	ENST00000487620	AOPEP	Q8N6M6	819 aa		11.45	□□□□□ -0.58
ZNF3-215	ENST00000487620	ANO10	Q9NW15	660 aa		11.45	□□□□□ -0.58
ZNF3-215	ENST00000487620	OGFR	Q9NZT2	677 aa		11.45	□□□□□ -0.58
ZNF3-215	ENST00000487620	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	11.45	□□□□□ -0.58
ZNF3-215	ENST00000487620	CTNNA3	Q9UI47	895 aa		11.45	□□□□□ -0.58
ZNF3-215	ENST00000487620		V9GYY5	206 aa	Predicted RBP	11.45	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms