RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 LMOD1P29536 600 aaPredicted RBP7.23□□□□□ -1.25
VPS13D-209ENST00000487188 MAGEA9P43362 315 aa7.23□□□□□ -1.25
VPS13D-209ENST00000487188 MLECQ14165 292 aa7.23□□□□□ -1.25
VPS13D-209ENST00000487188 STK38Q15208 465 aa7.23□□□□□ -1.25
VPS13D-209ENST00000487188 UTP14AQ9BVJ6 771 aaKnown RBP7.23□□□□□ -1.25
VPS13D-209ENST00000487188 SIL1Q9H173 461 aa7.23□□□□□ -1.25
VPS13D-209ENST00000487188 TTC41PQ6P2S7 1318 aa7.23□□□□□ -1.25
VPS13D-209ENST00000487188 TTC21BQ7Z4L5 1316 aa7.23□□□□□ -1.25
VPS13D-209ENST00000487188 KIAA0232Q92628 1395 aa7.23□□□□□ -1.25
VPS13D-209ENST00000487188 USP8P40818 1118 aa7.23□□□□□ -1.25
VPS13D-209ENST00000487188 NOP2P46087 812 aaKnown RBP7.23□□□□□ -1.25
VPS13D-209ENST00000487188 TTLL5Q6EMB2 1281 aa7.23□□□□□ -1.25
VPS13D-209ENST00000487188 RBM43Q6ZSC3 357 aaKnown RBP7.23□□□□□ -1.25
VPS13D-209ENST00000487188 MICALL1Q8N3F8 863 aa7.23□□□□□ -1.25
VPS13D-209ENST00000487188 CCDC12Q8WUD4 166 aaPredicted RBP7.23□□□□□ -1.25
VPS13D-209ENST00000487188 DNAAF4Q8WXU2 420 aa7.23□□□□□ -1.25
VPS13D-209ENST00000487188 ERBB3P21860 1342 aa7.23□□□□□ -1.25
VPS13D-209ENST00000487188 SALL3Q9BXA9 1300 aa7.23□□□□□ -1.25
VPS13D-209ENST00000487188 ABCC3O15438 1527 aa7.22□□□□□ -1.25
VPS13D-209ENST00000487188 GOLGA6L9A6NEM1 432 aa7.22□□□□□ -1.25
VPS13D-209ENST00000487188 CLGNO14967 610 aa7.22□□□□□ -1.25
VPS13D-209ENST00000487188 ZRANB2O95218 330 aaKnown RBP eCLIP7.22□□□□□ -1.25
VPS13D-209ENST00000487188 FAM160A1Q05DH4 1040 aa7.22□□□□□ -1.25
VPS13D-209ENST00000487188 SART3Q15020 963 aaKnown RBP7.22□□□□□ -1.25
VPS13D-209ENST00000487188 NBPF11Q86T75 865 aa7.22□□□□□ -1.25
VPS13D-209ENST00000487188 OSBPL5Q9H0X9 879 aaPredicted RBP7.22□□□□□ -1.25
VPS13D-209ENST00000487188 JAK2O60674 1132 aa7.22□□□□□ -1.25
VPS13D-209ENST00000487188 PHACTR2O75167 634 aa7.22□□□□□ -1.25
VPS13D-209ENST00000487188 GUCY2CP25092 1073 aa7.22□□□□□ -1.25
VPS13D-209ENST00000487188 CEBPAP49715 358 aaPredicted RBP7.22□□□□□ -1.25
VPS13D-209ENST00000487188 MNAT1P51948 309 aa7.22□□□□□ -1.25
VPS13D-209ENST00000487188 E2F4Q16254 413 aa7.22□□□□□ -1.25
VPS13D-209ENST00000487188 NRXN1Q9ULB1 1477 aa7.22□□□□□ -1.25
VPS13D-209ENST00000487188 POTEB2H3BUK9 544 aa7.22□□□□□ -1.25
VPS13D-209ENST00000487188 TBC1D8O95759 1140 aa7.22□□□□□ -1.25
VPS13D-209ENST00000487188 LONRF2Q1L5Z9 754 aa7.22□□□□□ -1.25
VPS13D-209ENST00000487188 AXDND1Q5T1B0 1012 aaPredicted RBP7.22□□□□□ -1.25
VPS13D-209ENST00000487188 MRPS27Q92552 414 aaKnown RBP7.22□□□□□ -1.25
VPS13D-209ENST00000487188 MPHOSPH8Q99549 860 aa7.22□□□□□ -1.25
VPS13D-209ENST00000487188 CAMSAP1Q5T5Y3 1602 aa7.22□□□□□ -1.25
VPS13D-209ENST00000487188 SLC3A2P08195 630 aaKnown RBP7.21□□□□□ -1.25
VPS13D-209ENST00000487188 GUCY1B3Q02153 619 aa7.21□□□□□ -1.25
VPS13D-209ENST00000487188 OLFM4Q6UX06 510 aa7.21□□□□□ -1.25
VPS13D-209ENST00000487188 HDXQ7Z353 690 aa7.21□□□□□ -1.25
VPS13D-209ENST00000487188 BANK1Q8NDB2 785 aa7.21□□□□□ -1.25
VPS13D-209ENST00000487188 IL17RAQ96F46 866 aa7.21□□□□□ -1.25
VPS13D-209ENST00000487188 FAM107BQ9H098 131 aa7.21□□□□□ -1.25
VPS13D-209ENST00000487188 GBP3Q9H0R5 595 aa7.21□□□□□ -1.25
VPS13D-209ENST00000487188 PDE11AQ9HCR9 933 aa7.21□□□□□ -1.25
VPS13D-209ENST00000487188 ECHDC1Q9NTX5 307 aa7.21□□□□□ -1.25
VPS13D-209ENST00000487188 MKRN1Q9UHC7 482 aaKnown RBP7.21□□□□□ -1.25
VPS13D-209ENST00000487188 EIF3CLB5ME19 914 aaKnown RBP7.21□□□□□ -1.26
VPS13D-209ENST00000487188 UBASH3AP57075 661 aa7.21□□□□□ -1.26
VPS13D-209ENST00000487188 ISM2Q6H9L7 571 aa7.21□□□□□ -1.26
VPS13D-209ENST00000487188 AACSQ86V21 672 aa7.21□□□□□ -1.26
VPS13D-209ENST00000487188 DHX40Q8IX18 779 aaKnown RBP7.21□□□□□ -1.26
VPS13D-209ENST00000487188 EIF3CQ99613 913 aaKnown RBP7.21□□□□□ -1.26
VPS13D-209ENST00000487188 PARD6BQ9BYG5 372 aa7.21□□□□□ -1.26
VPS13D-209ENST00000487188 ZRANB1Q9UGI0 708 aa7.21□□□□□ -1.26
VPS13D-209ENST00000487188 ANKRD65E5RJM6 399 aa7.21□□□□□ -1.26
VPS13D-209ENST00000487188 SLC27A2O14975 620 aa7.21□□□□□ -1.26
VPS13D-209ENST00000487188 ARMCX5Q6P1M9 558 aa7.21□□□□□ -1.26
VPS13D-209ENST00000487188 ERC1Q8IUD2 1116 aa7.21□□□□□ -1.26
VPS13D-209ENST00000487188 ANKRD20A12PQ8NF67 263 aa7.21□□□□□ -1.26
VPS13D-209ENST00000487188 PI4K2BQ8TCG2 481 aa7.21□□□□□ -1.26
VPS13D-209ENST00000487188 RABGGTAQ92696 567 aa7.21□□□□□ -1.26
VPS13D-209ENST00000487188 EVI5LQ96CN4 794 aa7.21□□□□□ -1.26
VPS13D-209ENST00000487188 YTHDC2Q9H6S0 1430 aaKnown RBP7.21□□□□□ -1.26
VPS13D-209ENST00000487188 SPATA31D1Q6ZQQ2 1576 aa7.21□□□□□ -1.26
VPS13D-209ENST00000487188 H0YHG0 523 aa7.2□□□□□ -1.26
VPS13D-209ENST00000487188 SASH3O75995 380 aa7.2□□□□□ -1.26
VPS13D-209ENST00000487188 RPS6KB1P23443 525 aa7.2□□□□□ -1.26
VPS13D-209ENST00000487188 FANCCQ00597 558 aa7.2□□□□□ -1.26
VPS13D-209ENST00000487188 KRT32Q14532 448 aa7.2□□□□□ -1.26
VPS13D-209ENST00000487188 KARSQ15046 597 aaKnown RBP7.2□□□□□ -1.26
VPS13D-209ENST00000487188 BRD3Q15059 726 aa7.2□□□□□ -1.26
VPS13D-209ENST00000487188 PUF60Q9UHX1 559 aaKnown RBP7.2□□□□□ -1.26
VPS13D-209ENST00000487188 ADGRB3O60242 1522 aa7.2□□□□□ -1.26
VPS13D-209ENST00000487188 EFCAB6Q5THR3 1501 aa7.2□□□□□ -1.26
VPS13D-209ENST00000487188 LMTK2Q8IWU2 1503 aa7.2□□□□□ -1.26
VPS13D-209ENST00000487188 ADGRB1O14514 1584 aa7.2□□□□□ -1.26
VPS13D-209ENST00000487188 NEURL4Q96JN8 1562 aa7.2□□□□□ -1.26
VPS13D-209ENST00000487188 EIF2S2P20042 333 aaKnown RBP7.2□□□□□ -1.26
VPS13D-209ENST00000487188 RESTQ13127 1097 aa7.2□□□□□ -1.26
VPS13D-209ENST00000487188 NMIQ13287 307 aaPredicted RBP7.2□□□□□ -1.26
VPS13D-209ENST00000487188 PSD3Q9NYI0 1048 aa7.2□□□□□ -1.26
VPS13D-209ENST00000487188 FAN1Q9Y2M0 1017 aa7.2□□□□□ -1.26
VPS13D-209ENST00000487188 ATP2B1P20020 1258 aa7.2□□□□□ -1.26
VPS13D-209ENST00000487188 CHMP4BP1P59074 171 aa7.2□□□□□ -1.26
VPS13D-209ENST00000487188 CCDC93Q567U6 631 aa7.2□□□□□ -1.26
VPS13D-209ENST00000487188 CEP170BQ9Y4F5 1589 aaPredicted RBP7.2□□□□□ -1.26
VPS13D-209ENST00000487188 A0A1B0GVL5 298 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 CCDC151A5D8V7 595 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 PPFIA3O75145 1194 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 PSME1Q06323 249 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 ST3GAL1Q11201 340 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 KIF4BQ2VIQ3 1234 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 HDGFL1Q5TGJ6 251 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 MCTP2Q6DN12 878 aa7.19□□□□□ -1.26
VPS13D-209ENST00000487188 SYNE3Q6ZMZ3 975 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 129.2 ms