RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 PXDNLA1KZ92 1463 aa12.4□□□□□ -0.42
CCDC171-208ENST00000486641 FAM160A1Q05DH4 1040 aa12.4□□□□□ -0.42
CCDC171-208ENST00000486641 ITSN1Q15811 1721 aa12.4□□□□□ -0.42
CCDC171-208ENST00000486641 SRLQ86TD4 932 aa12.4□□□□□ -0.42
CCDC171-208ENST00000486641 GOLGA5Q8TBA6 731 aa12.4□□□□□ -0.42
CCDC171-208ENST00000486641 CWC15Q9P013 229 aaKnown RBP12.4□□□□□ -0.42
CCDC171-208ENST00000486641 ADAM21Q9UKJ8 722 aa12.4□□□□□ -0.42
CCDC171-208ENST00000486641 PARP3Q9Y6F1 533 aa12.4□□□□□ -0.42
CCDC171-208ENST00000486641 MON2Q7Z3U7 1717 aa12.4□□□□□ -0.43
CCDC171-208ENST00000486641 LRRFIP1Q32MZ4 808 aaKnown RBP12.39□□□□□ -0.43
CCDC171-208ENST00000486641 RGS22Q8NE09 1264 aa12.39□□□□□ -0.43
CCDC171-208ENST00000486641 CCDC61Q9Y6R9 512 aa12.39□□□□□ -0.43
CCDC171-208ENST00000486641 RGPD1P0DJD0 1748 aa12.39□□□□□ -0.43
CCDC171-208ENST00000486641 C3P01024 1663 aa12.39□□□□□ -0.43
CCDC171-208ENST00000486641 A0A0D9SFI3 127 aa12.39□□□□□ -0.43
CCDC171-208ENST00000486641 FOSBP53539 338 aa12.39□□□□□ -0.43
CCDC171-208ENST00000486641 DPCR1Q3MIW9 517 aa12.39□□□□□ -0.43
CCDC171-208ENST00000486641 FSIP1Q8NA03 581 aa12.39□□□□□ -0.43
CCDC171-208ENST00000486641 USP28Q96RU2 1077 aa12.39□□□□□ -0.43
CCDC171-208ENST00000486641 RRP15Q9Y3B9 282 aaKnown RBP12.39□□□□□ -0.43
CCDC171-208ENST00000486641 CACNA1FO60840 1977 aa12.38□□□□□ -0.43
CCDC171-208ENST00000486641 LMAN1P49257 510 aa12.38□□□□□ -0.43
CCDC171-208ENST00000486641 EXOC4Q96A65 974 aa12.38□□□□□ -0.43
CCDC171-208ENST00000486641 AK7Q96M32 723 aa12.38□□□□□ -0.43
CCDC171-208ENST00000486641 FUT8Q9BYC5 575 aa12.38□□□□□ -0.43
CCDC171-208ENST00000486641 PEAK1Q9H792 1746 aa12.38□□□□□ -0.43
CCDC171-208ENST00000486641 SOX12O15370 315 aa12.38□□□□□ -0.43
CCDC171-208ENST00000486641 NRDCO43847 1150 aa12.38□□□□□ -0.43
CCDC171-208ENST00000486641 GPR161Q8N6U8 529 aaKnown RBP12.38□□□□□ -0.43
CCDC171-208ENST00000486641 FMNL2Q96PY5 1086 aa12.38□□□□□ -0.43
CCDC171-208ENST00000486641 YY1AP1Q9H869 796 aa12.38□□□□□ -0.43
CCDC171-208ENST00000486641 SNRKQ9NRH2 765 aa12.38□□□□□ -0.43
CCDC171-208ENST00000486641 PSD3Q9NYI0 1048 aa12.38□□□□□ -0.43
CCDC171-208ENST00000486641 CCP110O43303 1012 aa12.37□□□□□ -0.43
CCDC171-208ENST00000486641 GTF2A1P52655 376 aaPredicted RBP12.37□□□□□ -0.43
CCDC171-208ENST00000486641 GPATCH3Q96I76 525 aa12.37□□□□□ -0.43
CCDC171-208ENST00000486641 SDF4Q9BRK5 362 aa12.37□□□□□ -0.43
CCDC171-208ENST00000486641 PARD6BQ9BYG5 372 aa12.37□□□□□ -0.43
CCDC171-208ENST00000486641 ARFGAP3Q9NP61 516 aa12.37□□□□□ -0.43
CCDC171-208ENST00000486641 H3BQF6 201 aa12.37□□□□□ -0.43
CCDC171-208ENST00000486641 HIP1O00291 1037 aa12.37□□□□□ -0.43
CCDC171-208ENST00000486641 ACTN2P35609 894 aa12.37□□□□□ -0.43
CCDC171-208ENST00000486641 ME1P48163 572 aa12.37□□□□□ -0.43
CCDC171-208ENST00000486641 TAF7Q15545 349 aaPredicted RBP12.37□□□□□ -0.43
CCDC171-208ENST00000486641 TSGA10IPQ3SY00 556 aa12.37□□□□□ -0.43
CCDC171-208ENST00000486641 Q6ZUG5 572 aa12.37□□□□□ -0.43
CCDC171-208ENST00000486641 FMR1NBQ8N0W7 255 aaPredicted RBP12.37□□□□□ -0.43
CCDC171-208ENST00000486641 FAM177A1Q8N128 213 aaPredicted RBP12.37□□□□□ -0.43
CCDC171-208ENST00000486641 UTP14AQ9BVJ6 771 aaKnown RBP12.37□□□□□ -0.43
CCDC171-208ENST00000486641 PA2G4Q9UQ80 394 aaKnown RBP12.37□□□□□ -0.43
CCDC171-208ENST00000486641 MYH15Q9Y2K3 1946 aa12.36□□□□□ -0.43
CCDC171-208ENST00000486641 HSP90B1P14625 803 aaKnown RBP12.36□□□□□ -0.43
CCDC171-208ENST00000486641 SCRN1Q12765 414 aa12.36□□□□□ -0.43
CCDC171-208ENST00000486641 GNL2Q13823 731 aaKnown RBP12.36□□□□□ -0.43
CCDC171-208ENST00000486641 BEND3Q5T5X7 828 aa12.36□□□□□ -0.43
CCDC171-208ENST00000486641 HDGFL1Q5TGJ6 251 aa12.36□□□□□ -0.43
CCDC171-208ENST00000486641 FBXO31Q5XUX0 539 aaPredicted RBP12.36□□□□□ -0.43
CCDC171-208ENST00000486641 ZNF589Q86UQ0 364 aaPredicted RBP12.36□□□□□ -0.43
CCDC171-208ENST00000486641 AACSQ86V21 672 aa12.36□□□□□ -0.43
CCDC171-208ENST00000486641 IQUBQ8NA54 791 aa12.36□□□□□ -0.43
CCDC171-208ENST00000486641 BPIFA3Q9BQP9 254 aa12.36□□□□□ -0.43
CCDC171-208ENST00000486641 KIAA1468Q9P260 1216 aa12.36□□□□□ -0.43
CCDC171-208ENST00000486641 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.36□□□□□ -0.43
CCDC171-208ENST00000486641 A0A1B0GVL5 298 aa12.36□□□□□ -0.43
CCDC171-208ENST00000486641 MAP3K9P80192 1104 aa12.36□□□□□ -0.43
CCDC171-208ENST00000486641 DHX8Q14562 1220 aaKnown RBP12.36□□□□□ -0.43
CCDC171-208ENST00000486641 NCAPHQ15003 741 aa12.36□□□□□ -0.43
CCDC171-208ENST00000486641 ICE2Q659A1 982 aa12.36□□□□□ -0.43
CCDC171-208ENST00000486641 CTR9Q6PD62 1173 aa12.36□□□□□ -0.43
CCDC171-208ENST00000486641 RSRC2Q7L4I2 434 aaKnown RBP12.36□□□□□ -0.43
CCDC171-208ENST00000486641 SMARCC2Q8TAQ2 1214 aa12.36□□□□□ -0.43
CCDC171-208ENST00000486641 CHMP4CQ96CF2 233 aa12.36□□□□□ -0.43
CCDC171-208ENST00000486641 AKAP12Q02952 1782 aa12.35□□□□□ -0.43
CCDC171-208ENST00000486641 VWA3AA6NCI4 1184 aa12.35□□□□□ -0.43
CCDC171-208ENST00000486641 PSME1Q06323 249 aa12.35□□□□□ -0.43
CCDC171-208ENST00000486641 HMG20BQ9P0W2 317 aa12.35□□□□□ -0.43
CCDC171-208ENST00000486641 PCDHA7Q9UN72 937 aa12.35□□□□□ -0.43
CCDC171-208ENST00000486641 RIMBP3CA6NJZ7 1639 aa12.34□□□□□ -0.43
CCDC171-208ENST00000486641 RIMBP3BA6NNM3 1639 aa12.34□□□□□ -0.43
CCDC171-208ENST00000486641 RIMBP3Q9UFD9 1639 aa12.34□□□□□ -0.43
CCDC171-208ENST00000486641 BIN1O00499 593 aa12.34□□□□□ -0.43
CCDC171-208ENST00000486641 LMOD1P29536 600 aaPredicted RBP12.34□□□□□ -0.43
CCDC171-208ENST00000486641 NDUFA8P51970 172 aa12.34□□□□□ -0.43
CCDC171-208ENST00000486641 FANCCQ00597 558 aa12.34□□□□□ -0.43
CCDC171-208ENST00000486641 GOLGA8FQ08AF8 430 aa12.34□□□□□ -0.43
CCDC171-208ENST00000486641 GOLGA8DPQ0D2H9 430 aa12.34□□□□□ -0.43
CCDC171-208ENST00000486641 NAA16Q6N069 864 aaPredicted RBP12.34□□□□□ -0.43
CCDC171-208ENST00000486641 TXNDC2Q86VQ3 553 aa12.34□□□□□ -0.43
CCDC171-208ENST00000486641 ZNF396Q96N95 335 aaPredicted RBP12.34□□□□□ -0.43
CCDC171-208ENST00000486641 NEK1Q96PY6 1258 aa12.34□□□□□ -0.43
CCDC171-208ENST00000486641 SIL1Q9H173 461 aa12.34□□□□□ -0.43
CCDC171-208ENST00000486641 GEMIN8Q9NWZ8 242 aaKnown RBP12.34□□□□□ -0.43
CCDC171-208ENST00000486641 PLEKHG2Q9H7P9 1386 aa12.34□□□□□ -0.43
CCDC171-208ENST00000486641 NUTM2FA1L443 756 aa12.34□□□□□ -0.43
CCDC171-208ENST00000486641 PI4KAP2A4QPH2 592 aa12.34□□□□□ -0.43
CCDC171-208ENST00000486641 ATP1A3P13637 1013 aa12.34□□□□□ -0.43
CCDC171-208ENST00000486641 PPP2R3AQ06190 1150 aa12.34□□□□□ -0.43
CCDC171-208ENST00000486641 ZRSR1Q15695 479 aaKnown RBP12.34□□□□□ -0.43
CCDC171-208ENST00000486641 LONRF2Q1L5Z9 754 aa12.34□□□□□ -0.43
CCDC171-208ENST00000486641 NUTM2GQ5VZR2 741 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms