RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 PCCAP05165 728 aaPredicted RBP10.12□□□□□ -0.79
USP40-216ENST00000485943 IGHMBP2P38935 993 aaKnown RBP10.12□□□□□ -0.79
USP40-216ENST00000485943 CWF19L2Q2TBE0 894 aaKnown RBP10.12□□□□□ -0.79
USP40-216ENST00000485943 GRIPAP1Q4V328 841 aa10.12□□□□□ -0.79
USP40-216ENST00000485943 CC2D2BQ6DHV5 1058 aa10.12□□□□□ -0.79
USP40-216ENST00000485943 G2E3Q7L622 706 aa10.12□□□□□ -0.79
USP40-216ENST00000485943 UBE3BQ7Z3V4 1068 aa10.12□□□□□ -0.79
USP40-216ENST00000485943 SUPT20HQ8NEM7 779 aa10.12□□□□□ -0.79
USP40-216ENST00000485943 JDP2Q8WYK2 163 aa10.12□□□□□ -0.79
USP40-216ENST00000485943 CCDC85AQ96PX6 553 aaPredicted RBP10.12□□□□□ -0.79
USP40-216ENST00000485943 MPHOSPH8Q99549 860 aa10.12□□□□□ -0.79
USP40-216ENST00000485943 ISCA1Q9BUE6 129 aa10.12□□□□□ -0.79
USP40-216ENST00000485943 GPBP1L1Q9HC44 474 aaPredicted RBP10.12□□□□□ -0.79
USP40-216ENST00000485943 ANKRD31Q8N7Z5 1873 aa10.12□□□□□ -0.79
USP40-216ENST00000485943 ABCC12Q96J65 1359 aa10.12□□□□□ -0.79
USP40-216ENST00000485943 DLEC1Q9Y238 1755 aa10.11□□□□□ -0.79
USP40-216ENST00000485943 NEURL1BA8MQ27 555 aa10.11□□□□□ -0.79
USP40-216ENST00000485943 F6X3S4 739 aa10.11□□□□□ -0.79
USP40-216ENST00000485943 KIF3CO14782 793 aa10.11□□□□□ -0.79
USP40-216ENST00000485943 LMNB1P20700 586 aa10.11□□□□□ -0.79
USP40-216ENST00000485943 FOXK1P85037 733 aa10.11□□□□□ -0.79
USP40-216ENST00000485943 TRIM28Q13263 835 aaKnown RBP10.11□□□□□ -0.79
USP40-216ENST00000485943 C9orf131Q5VYM1 1079 aa10.11□□□□□ -0.79
USP40-216ENST00000485943 TMC4Q7Z404 712 aa10.11□□□□□ -0.79
USP40-216ENST00000485943 LRP10Q7Z4F1 713 aa10.11□□□□□ -0.79
USP40-216ENST00000485943 ANKRD18AQ8IVF6 992 aa10.11□□□□□ -0.79
USP40-216ENST00000485943 ZC3H15Q8WU90 426 aaKnown RBP10.11□□□□□ -0.79
USP40-216ENST00000485943 CRAMP1Q96RY5 1269 aa10.11□□□□□ -0.79
USP40-216ENST00000485943 ANKIB1Q9P2G1 1089 aa10.11□□□□□ -0.79
USP40-216ENST00000485943 BRCA1P38398 1863 aaKnown RBP10.1□□□□□ -0.79
USP40-216ENST00000485943 KDM2BQ8NHM5 1336 aa10.1□□□□□ -0.79
USP40-216ENST00000485943 BBOX1O75936 387 aa10.1□□□□□ -0.79
USP40-216ENST00000485943 KCNA3P22001 575 aa10.1□□□□□ -0.79
USP40-216ENST00000485943 KCNJ4P48050 445 aa10.1□□□□□ -0.79
USP40-216ENST00000485943 RASSF7Q02833 373 aa10.1□□□□□ -0.79
USP40-216ENST00000485943 GRAPQ13588 217 aa10.1□□□□□ -0.79
USP40-216ENST00000485943 DPP8Q6V1X1 898 aaPredicted RBP10.1□□□□□ -0.79
USP40-216ENST00000485943 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.1□□□□□ -0.79
USP40-216ENST00000485943 GRAPLQ8TC17 118 aaPredicted RBP10.1□□□□□ -0.79
USP40-216ENST00000485943 SSH1Q8WYL5 1049 aa10.1□□□□□ -0.79
USP40-216ENST00000485943 JARID2Q92833 1246 aaPredicted RBP10.1□□□□□ -0.79
USP40-216ENST00000485943 MYH3P11055 1940 aa10.09□□□□□ -0.79
USP40-216ENST00000485943 CCDC88AQ3V6T2 1871 aa10.09□□□□□ -0.79
USP40-216ENST00000485943 C6orf229H3BNL8 230 aa10.09□□□□□ -0.79
USP40-216ENST00000485943 ALDH1L1O75891 902 aa10.09□□□□□ -0.79
USP40-216ENST00000485943 MS4A1P11836 297 aa10.09□□□□□ -0.79
USP40-216ENST00000485943 PLCG2P16885 1265 aa10.09□□□□□ -0.79
USP40-216ENST00000485943 CCT4P50991 539 aaKnown RBP10.09□□□□□ -0.79
USP40-216ENST00000485943 CTSWP56202 376 aa10.09□□□□□ -0.79
USP40-216ENST00000485943 GCKRQ14397 625 aa10.09□□□□□ -0.79
USP40-216ENST00000485943 CCDC57Q2TAC2 916 aa10.09□□□□□ -0.79
USP40-216ENST00000485943 SLC10A5Q5PT55 438 aa10.09□□□□□ -0.79
USP40-216ENST00000485943 MPNDQ8N594 471 aa10.09□□□□□ -0.79
USP40-216ENST00000485943 MRPL50Q8N5N7 158 aaKnown RBP10.09□□□□□ -0.79
USP40-216ENST00000485943 TMC2Q8TDI7 906 aa10.09□□□□□ -0.79
USP40-216ENST00000485943 EYA3Q99504 573 aa10.09□□□□□ -0.79
USP40-216ENST00000485943 NOB1Q9ULX3 412 aaKnown RBP10.09□□□□□ -0.79
USP40-216ENST00000485943 COL11A2P13942 1736 aaPredicted RBP10.09□□□□□ -0.79
USP40-216ENST00000485943 ADCY9O60503 1353 aa10.09□□□□□ -0.79
USP40-216ENST00000485943 CDHR2Q9BYE9 1310 aa10.08□□□□□ -0.8
USP40-216ENST00000485943 RIC1Q4ADV7 1423 aa10.08□□□□□ -0.8
USP40-216ENST00000485943 SLX4Q8IY92 1834 aa10.08□□□□□ -0.8
USP40-216ENST00000485943 ANKRD18BA2A2Z9 1011 aa10.08□□□□□ -0.8
USP40-216ENST00000485943 C2orf72A6NCS6 295 aa10.08□□□□□ -0.8
USP40-216ENST00000485943 GRM8O00222 908 aa10.08□□□□□ -0.8
USP40-216ENST00000485943 DPYSL4O14531 572 aa10.08□□□□□ -0.8
USP40-216ENST00000485943 EIF6P56537 245 aaKnown RBP10.08□□□□□ -0.8
USP40-216ENST00000485943 FKBP4Q02790 459 aaKnown RBP eCLIP10.08□□□□□ -0.8
USP40-216ENST00000485943 IFIT5Q13325 482 aaKnown RBP10.08□□□□□ -0.8
USP40-216ENST00000485943 CRY2Q49AN0 593 aa10.08□□□□□ -0.8
USP40-216ENST00000485943 NIM1KQ8IY84 436 aa10.08□□□□□ -0.8
USP40-216ENST00000485943 SYNE4Q8N205 404 aa10.08□□□□□ -0.8
USP40-216ENST00000485943 LARGE2Q8N3Y3 721 aa10.08□□□□□ -0.8
USP40-216ENST00000485943 NSFL1CQ9UNZ2 370 aaKnown RBP10.08□□□□□ -0.8
USP40-216ENST00000485943 COLQQ9Y215 455 aaPredicted RBP10.08□□□□□ -0.8
USP40-216ENST00000485943 ABCC4O15439 1325 aa10.07□□□□□ -0.8
USP40-216ENST00000485943 TNRC6CQ9HCJ0 1690 aaKnown RBP10.07□□□□□ -0.8
USP40-216ENST00000485943 PPIP5K2O43314 1243 aa10.07□□□□□ -0.8
USP40-216ENST00000485943 IGKV5-2P06315 115 aa10.07□□□□□ -0.8
USP40-216ENST00000485943 UBTFL1P0CB47 393 aaPredicted RBP10.07□□□□□ -0.8
USP40-216ENST00000485943 MLLT3P42568 568 aaPredicted RBP10.07□□□□□ -0.8
USP40-216ENST00000485943 RARSP54136 660 aaKnown RBP10.07□□□□□ -0.8
USP40-216ENST00000485943 RPS8P62241 208 aaKnown RBP10.07□□□□□ -0.8
USP40-216ENST00000485943 ZKSCAN2Q63HK3 967 aa10.07□□□□□ -0.8
USP40-216ENST00000485943 KIAA1551Q9HCM1 1747 aa10.07□□□□□ -0.8
USP40-216ENST00000485943 LAMB2P55268 1798 aa10.06□□□□□ -0.8
USP40-216ENST00000485943 KLRG2A4D1S0 409 aaPredicted RBP10.06□□□□□ -0.8
USP40-216ENST00000485943 LMOD1P29536 600 aaPredicted RBP10.06□□□□□ -0.8
USP40-216ENST00000485943 HOXA10P31260 410 aaPredicted RBP10.06□□□□□ -0.8
USP40-216ENST00000485943 SF3B3Q15393 1217 aaKnown RBP10.06□□□□□ -0.8
USP40-216ENST00000485943 BEND3Q5T5X7 828 aa10.06□□□□□ -0.8
USP40-216ENST00000485943 TMEM92Q6UXU6 159 aa10.06□□□□□ -0.8
USP40-216ENST00000485943 CLUAP1Q96AJ1 413 aa10.06□□□□□ -0.8
USP40-216ENST00000485943 ZNF277Q9NRM2 450 aaPredicted RBP10.06□□□□□ -0.8
USP40-216ENST00000485943 CNNM1Q9NRU3 951 aa10.06□□□□□ -0.8
USP40-216ENST00000485943 ATP6V0A2Q9Y487 856 aa10.06□□□□□ -0.8
USP40-216ENST00000485943 DDX60Q8IY21 1712 aaKnown RBP10.05□□□□□ -0.8
USP40-216ENST00000485943 POTEFA5A3E0 1075 aa10.05□□□□□ -0.8
USP40-216ENST00000485943 ITGA6P23229 1130 aa10.05□□□□□ -0.8
USP40-216ENST00000485943 IARSP41252 1262 aaKnown RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms