RNA–Protein interactions for RNA: ENST00000485645.5

SMC4-216, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-216ENST00000485645 TRPM4Q8TD43 1214 aa22.02■■□□□ 1.12
SMC4-216ENST00000485645 DPF2Q92785 391 aa22.02■■□□□ 1.12
SMC4-216ENST00000485645 GPR101Q96P66 508 aaPredicted RBP22.02■■□□□ 1.12
SMC4-216ENST00000485645 CCDC85AQ96PX6 553 aaPredicted RBP22.02■■□□□ 1.12
SMC4-216ENST00000485645 ZC3H12CQ9C0D7 883 aaKnown RBP22.02■■□□□ 1.12
SMC4-216ENST00000485645 IGKV5-2P06315 115 aa22.01■■□□□ 1.11
SMC4-216ENST00000485645 PAXIP1Q6ZW49 1069 aaPredicted RBP22.01■■□□□ 1.11
SMC4-216ENST00000485645 WBP1LQ9NX94 342 aa22.01■■□□□ 1.11
SMC4-216ENST00000485645 SHTN1A0MZ66 631 aa22■■□□□ 1.11
SMC4-216ENST00000485645 ZNF316A6NFI3 1004 aaPredicted RBP22■■□□□ 1.11
SMC4-216ENST00000485645 UFL1O94874 794 aa22■■□□□ 1.11
SMC4-216ENST00000485645 SLC4A2P04920 1241 aa22■■□□□ 1.11
SMC4-216ENST00000485645 CTCFP49711 727 aaPredicted RBP22■■□□□ 1.11
SMC4-216ENST00000485645 ANKRD18AQ8IVF6 992 aa22■■□□□ 1.11
SMC4-216ENST00000485645 GLIS2Q9BZE0 524 aaPredicted RBP22■■□□□ 1.11
SMC4-216ENST00000485645 GGA1Q9UJY5 639 aa22■■□□□ 1.11
SMC4-216ENST00000485645 G3V3G9 751 aa21.99■■□□□ 1.11
SMC4-216ENST00000485645 CELF2O95319 508 aaKnown RBP21.99■■□□□ 1.11
SMC4-216ENST00000485645 RPS12P25398 132 aaKnown RBP21.99■■□□□ 1.11
SMC4-216ENST00000485645 ECE1P42892 770 aa21.99■■□□□ 1.11
SMC4-216ENST00000485645 MAP2K1Q02750 393 aaPredicted RBP21.99■■□□□ 1.11
SMC4-216ENST00000485645 DCAF8Q5TAQ9 597 aa21.99■■□□□ 1.11
SMC4-216ENST00000485645 CDC37L1Q7L3B6 337 aa21.99■■□□□ 1.11
SMC4-216ENST00000485645 KCNQ5Q9NR82 932 aa21.99■■□□□ 1.11
SMC4-216ENST00000485645 TLL2Q9Y6L7 1015 aa21.99■■□□□ 1.11
SMC4-216ENST00000485645 CTSWP56202 376 aa21.98■■□□□ 1.11
SMC4-216ENST00000485645 G2E3Q7L622 706 aa21.98■■□□□ 1.11
SMC4-216ENST00000485645 CAPNS2Q96L46 248 aa21.98■■□□□ 1.11
SMC4-216ENST00000485645 PRDM10Q9NQV6 1147 aa21.98■■□□□ 1.11
SMC4-216ENST00000485645 CAPN15O75808 1086 aa21.97■■□□□ 1.11
SMC4-216ENST00000485645 CWF19L2Q2TBE0 894 aaKnown RBP21.97■■□□□ 1.11
SMC4-216ENST00000485645 CYP4F22Q6NT55 531 aa21.97■■□□□ 1.11
SMC4-216ENST00000485645 SAMD7Q7Z3H4 446 aa21.97■■□□□ 1.11
SMC4-216ENST00000485645 CDC5LQ99459 802 aaKnown RBP21.97■■□□□ 1.11
SMC4-216ENST00000485645 SALL2Q9Y467 1007 aaPredicted RBP21.97■■□□□ 1.11
SMC4-216ENST00000485645 XDHP47989 1333 aa21.97■■□□□ 1.11
SMC4-216ENST00000485645 RTL9Q8NET4 1388 aa21.97■■□□□ 1.11
SMC4-216ENST00000485645 NEURL1BA8MQ27 555 aa21.96■■□□□ 1.11
SMC4-216ENST00000485645 GRM1Q13255 1194 aa21.96■■□□□ 1.11
SMC4-216ENST00000485645 TBC1D10BQ4KMP7 808 aaPredicted RBP21.96■■□□□ 1.11
SMC4-216ENST00000485645 WDR63Q8IWG1 891 aa21.96■■□□□ 1.11
SMC4-216ENST00000485645 TTLL11Q8NHH1 800 aa21.96■■□□□ 1.11
SMC4-216ENST00000485645 VIL1P09327 827 aaKnown RBP21.95■■□□□ 1.1
SMC4-216ENST00000485645 FLIIQ13045 1269 aa21.95■■□□□ 1.1
SMC4-216ENST00000485645 SAPCD2Q86UD0 394 aa21.95■■□□□ 1.1
SMC4-216ENST00000485645 ZNF408Q9H9D4 720 aa21.95■■□□□ 1.1
SMC4-216ENST00000485645 FANCIQ9NVI1 1328 aa21.95■■□□□ 1.1
SMC4-216ENST00000485645 ATP2B4P23634 1241 aa21.94■■□□□ 1.1
SMC4-216ENST00000485645 RBM26Q5T8P6 1007 aaKnown RBP21.94■■□□□ 1.1
SMC4-216ENST00000485645 USP48Q86UV5 1035 aa21.94■■□□□ 1.1
SMC4-216ENST00000485645 H7C1W4 665 aa21.93■■□□□ 1.1
SMC4-216ENST00000485645 MYH3P11055 1940 aa21.93■■□□□ 1.1
SMC4-216ENST00000485645 LBX1P52954 281 aa21.93■■□□□ 1.1
SMC4-216ENST00000485645 FKBP5Q13451 457 aaPredicted RBP21.93■■□□□ 1.1
SMC4-216ENST00000485645 UBE3BQ7Z3V4 1068 aa21.93■■□□□ 1.1
SMC4-216ENST00000485645 GREM2Q9H772 168 aa21.93■■□□□ 1.1
SMC4-216ENST00000485645 BSDC1Q9NW68 430 aaPredicted RBP21.93■■□□□ 1.1
SMC4-216ENST00000485645 SCN9AQ15858 1988 aa21.92■■□□□ 1.1
SMC4-216ENST00000485645 EGFRP00533 1210 aa21.92■■□□□ 1.1
SMC4-216ENST00000485645 DNAAF4Q8WXU2 420 aa21.92■■□□□ 1.1
SMC4-216ENST00000485645 HHIPL1Q96JK4 782 aa21.92■■□□□ 1.1
SMC4-216ENST00000485645 BEGAINQ9BUH8 593 aa21.92■■□□□ 1.1
SMC4-216ENST00000485645 CACNA1FO60840 1977 aa21.91■■□□□ 1.1
SMC4-216ENST00000485645 VAMP4O75379 141 aa21.91■■□□□ 1.1
SMC4-216ENST00000485645 GCKRQ14397 625 aa21.91■■□□□ 1.1
SMC4-216ENST00000485645 KRT26Q7Z3Y9 468 aa21.91■■□□□ 1.1
SMC4-216ENST00000485645 DCPSQ96C86 337 aaKnown RBP21.91■■□□□ 1.1
SMC4-216ENST00000485645 MYH16Q9H6N6 1097 aa21.91■■□□□ 1.1
SMC4-216ENST00000485645 MINPP1Q9UNW1 487 aa21.91■■□□□ 1.1
SMC4-216ENST00000485645 HSPA8P11142 646 aaKnown RBP21.9■■□□□ 1.1
SMC4-216ENST00000485645 MAP2K2P36507 400 aa21.9■■□□□ 1.1
SMC4-216ENST00000485645 EXOSC9Q06265 439 aaKnown RBP21.9■■□□□ 1.1
SMC4-216ENST00000485645 KIF4BQ2VIQ3 1234 aa21.9■■□□□ 1.1
SMC4-216ENST00000485645 RSBN1LQ6PCB5 846 aaPredicted RBP21.9■■□□□ 1.1
SMC4-216ENST00000485645 PODNQ7Z5L7 613 aa21.9■■□□□ 1.1
SMC4-216ENST00000485645 AGBL3Q8NEM8 1001 aa21.9■■□□□ 1.1
SMC4-216ENST00000485645 POLR2AP24928 1970 aaKnown RBP21.89■■□□□ 1.09
SMC4-216ENST00000485645 THSD7BQ9C0I4 1608 aa21.89■■□□□ 1.09
SMC4-216ENST00000485645 IGHMBP2P38935 993 aaKnown RBP21.89■■□□□ 1.09
SMC4-216ENST00000485645 LINS1Q8NG48 757 aa21.89■■□□□ 1.09
SMC4-216ENST00000485645 PLA2G12BQ9BX93 195 aa21.89■■□□□ 1.09
SMC4-216ENST00000485645 AOC2O75106 756 aa21.88■■□□□ 1.09
SMC4-216ENST00000485645 DLK2Q6UY11 383 aa21.88■■□□□ 1.09
SMC4-216ENST00000485645 USP17L3A6NCW0 530 aa21.87■■□□□ 1.09
SMC4-216ENST00000485645 USP17L4A6NCW7 530 aa21.87■■□□□ 1.09
SMC4-216ENST00000485645 CCT4P50991 539 aaKnown RBP21.87■■□□□ 1.09
SMC4-216ENST00000485645 USP17L1Q7RTZ2 530 aa21.87■■□□□ 1.09
SMC4-216ENST00000485645 FAM9BQ8IZU0 186 aa21.87■■□□□ 1.09
SMC4-216ENST00000485645 SPEF2Q9C093 1822 aa21.87■■□□□ 1.09
SMC4-216ENST00000485645 MED23Q9ULK4 1368 aa21.87■■□□□ 1.09
SMC4-216ENST00000485645 WTIPA6NIX2 430 aaPredicted RBP21.86■■□□□ 1.09
SMC4-216ENST00000485645 ITGA6P23229 1130 aa21.86■■□□□ 1.09
SMC4-216ENST00000485645 CASP7P55210 303 aa21.86■■□□□ 1.09
SMC4-216ENST00000485645 HUNKP57058 714 aa21.86■■□□□ 1.09
SMC4-216ENST00000485645 ZNF280AP59817 542 aaPredicted RBP21.86■■□□□ 1.09
SMC4-216ENST00000485645 ZNF609O15014 1411 aa21.86■■□□□ 1.09
SMC4-216ENST00000485645 PSME4Q14997 1843 aa21.85■■□□□ 1.09
SMC4-216ENST00000485645 ADM5C9JUS6 153 aa21.85■■□□□ 1.09
SMC4-216ENST00000485645 CSF1RP07333 972 aa21.85■■□□□ 1.09
SMC4-216ENST00000485645 SULF1Q8IWU6 871 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms