RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	SAMD7	Q7Z3H4	446 aa		13.78	□□□□□ -0.2
HMGN1-215	ENST00000485550	RTFDC1	Q9BY42	306 aa	Predicted RBP	13.78	□□□□□ -0.2
HMGN1-215	ENST00000485550	RNF186	Q9NXI6	227 aa		13.78	□□□□□ -0.2
HMGN1-215	ENST00000485550	CDHR2	Q9BYE9	1310 aa		13.78	□□□□□ -0.2
HMGN1-215	ENST00000485550	HCLS1	P14317	486 aa	Predicted RBP	13.77	□□□□□ -0.21
HMGN1-215	ENST00000485550	SCN9A	Q15858	1988 aa		13.77	□□□□□ -0.21
HMGN1-215	ENST00000485550	PRPF38B	Q5VTL8	546 aa	Known RBP	13.77	□□□□□ -0.21
HMGN1-215	ENST00000485550	MPND	Q8N594	471 aa		13.77	□□□□□ -0.21
HMGN1-215	ENST00000485550	GBA2	Q9HCG7	927 aa	Predicted RBP	13.77	□□□□□ -0.21
HMGN1-215	ENST00000485550	CHPF2	Q9P2E5	772 aa		13.77	□□□□□ -0.21
HMGN1-215	ENST00000485550	DUOX1	Q9NRD9	1551 aa		13.76	□□□□□ -0.21
HMGN1-215	ENST00000485550	APAF1	O14727	1248 aa		13.76	□□□□□ -0.21
HMGN1-215	ENST00000485550	EGFR	P00533	1210 aa		13.76	□□□□□ -0.21
HMGN1-215	ENST00000485550	PRR29	P0C7W0	189 aa		13.76	□□□□□ -0.21
HMGN1-215	ENST00000485550	ZNF157	P51786	506 aa	Predicted RBP	13.76	□□□□□ -0.21
HMGN1-215	ENST00000485550	HDGFL1	Q5TGJ6	251 aa		13.76	□□□□□ -0.21
HMGN1-215	ENST00000485550	KRT26	Q7Z3Y9	468 aa		13.76	□□□□□ -0.21
HMGN1-215	ENST00000485550	NLRP10	Q86W26	655 aa		13.76	□□□□□ -0.21
HMGN1-215	ENST00000485550	SP8	Q8IXZ3	490 aa		13.76	□□□□□ -0.21
HMGN1-215	ENST00000485550	SAGE1	Q9NXZ1	904 aa		13.76	□□□□□ -0.21
HMGN1-215	ENST00000485550	TRMT112	Q9UI30	125 aa	Known RBP	13.76	□□□□□ -0.21
HMGN1-215	ENST00000485550	LRRC37A	A6NMS7	1700 aa		13.76	□□□□□ -0.21
HMGN1-215	ENST00000485550	DDX60	Q8IY21	1712 aa	Known RBP	13.76	□□□□□ -0.21
HMGN1-215	ENST00000485550	ADM5	C9JUS6	153 aa		13.75	□□□□□ -0.21
HMGN1-215	ENST00000485550	TCIRG1	Q13488	830 aa		13.75	□□□□□ -0.21
HMGN1-215	ENST00000485550	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.75	□□□□□ -0.21
HMGN1-215	ENST00000485550	HSP90AB3P	Q58FF7	597 aa		13.75	□□□□□ -0.21
HMGN1-215	ENST00000485550	SLC10A5	Q5PT55	438 aa		13.75	□□□□□ -0.21
HMGN1-215	ENST00000485550	CTU1	Q7Z7A3	348 aa	Known RBP	13.75	□□□□□ -0.21
HMGN1-215	ENST00000485550	C2orf69	Q8N8R5	385 aa		13.75	□□□□□ -0.21
HMGN1-215	ENST00000485550	C19orf67	A6NJJ6	358 aa		13.74	□□□□□ -0.21
HMGN1-215	ENST00000485550	ELL2	O00472	640 aa	Predicted RBP	13.74	□□□□□ -0.21
HMGN1-215	ENST00000485550	PSMD14	O00487	310 aa		13.74	□□□□□ -0.21
HMGN1-215	ENST00000485550	BBOX1	O75936	387 aa		13.74	□□□□□ -0.21
HMGN1-215	ENST00000485550	RBM26	Q5T8P6	1007 aa	Known RBP	13.74	□□□□□ -0.21
HMGN1-215	ENST00000485550	DUSP27	Q5VZP5	1158 aa		13.74	□□□□□ -0.21
HMGN1-215	ENST00000485550	CCDC102A	Q96A19	550 aa		13.74	□□□□□ -0.21
HMGN1-215	ENST00000485550	MBIP	Q9NS73	344 aa		13.74	□□□□□ -0.21
HMGN1-215	ENST00000485550	ATP5J2-PTCD1	G3V325	749 aa		13.73	□□□□□ -0.21
HMGN1-215	ENST00000485550	ANKRD13D	Q6ZTN6	518 aa		13.73	□□□□□ -0.21
HMGN1-215	ENST00000485550	DCPS	Q96C86	337 aa	Known RBP	13.73	□□□□□ -0.21
HMGN1-215	ENST00000485550	CSRNP1	Q96S65	589 aa		13.73	□□□□□ -0.21
HMGN1-215	ENST00000485550	DBNDD1	Q9H9R9	158 aa		13.73	□□□□□ -0.21
HMGN1-215	ENST00000485550	SLC10A3	P09131	477 aa		13.72	□□□□□ -0.21
HMGN1-215	ENST00000485550	RTL5	Q5HYW3	569 aa	Predicted RBP	13.72	□□□□□ -0.21
HMGN1-215	ENST00000485550	DDX46	Q7L014	1031 aa	Known RBP	13.72	□□□□□ -0.21
HMGN1-215	ENST00000485550	DBF4	Q9UBU7	674 aa	Predicted RBP	13.72	□□□□□ -0.21
HMGN1-215	ENST00000485550	HPS5	Q9UPZ3	1129 aa		13.72	□□□□□ -0.21
HMGN1-215	ENST00000485550	PSME4	Q14997	1843 aa		13.71	□□□□□ -0.21
HMGN1-215	ENST00000485550	SH3TC1	Q8TE82	1336 aa		13.71	□□□□□ -0.21
HMGN1-215	ENST00000485550	RIMBP2	O15034	1052 aa		13.71	□□□□□ -0.21
HMGN1-215	ENST00000485550	GRAP	Q13588	217 aa		13.71	□□□□□ -0.21
HMGN1-215	ENST00000485550	CCDC184	Q52MB2	194 aa		13.71	□□□□□ -0.21
HMGN1-215	ENST00000485550	PLBD2	Q8NHP8	589 aa		13.71	□□□□□ -0.21
HMGN1-215	ENST00000485550	GRAPL	Q8TC17	118 aa	Predicted RBP	13.71	□□□□□ -0.21
HMGN1-215	ENST00000485550	DPF2	Q92785	391 aa		13.71	□□□□□ -0.21
HMGN1-215	ENST00000485550	KCNQ5	Q9NR82	932 aa		13.71	□□□□□ -0.21
HMGN1-215	ENST00000485550	COL4A1	P02462	1669 aa		13.7	□□□□□ -0.22
HMGN1-215	ENST00000485550	HOXB7	P09629	217 aa		13.7	□□□□□ -0.22
HMGN1-215	ENST00000485550	ZNF853	P0CG23	659 aa		13.7	□□□□□ -0.22
HMGN1-215	ENST00000485550	WASHC4	Q2M389	1173 aa		13.7	□□□□□ -0.22
HMGN1-215	ENST00000485550	FAM89A	Q96GI7	184 aa		13.7	□□□□□ -0.22
HMGN1-215	ENST00000485550	PHAX	Q9H814	394 aa	Known RBP	13.7	□□□□□ -0.22
HMGN1-215	ENST00000485550	HYPK	Q9NX55	129 aa		13.7	□□□□□ -0.22
HMGN1-215	ENST00000485550	ASTN2	O75129	1339 aa	Predicted RBP	13.69	□□□□□ -0.22
HMGN1-215	ENST00000485550	GNAI1	P63096	354 aa		13.69	□□□□□ -0.22
HMGN1-215	ENST00000485550	KIF4B	Q2VIQ3	1234 aa		13.69	□□□□□ -0.22
HMGN1-215	ENST00000485550	RIC3	Q7Z5B4	369 aa		13.69	□□□□□ -0.22
HMGN1-215	ENST00000485550	ISCA1	Q9BUE6	129 aa		13.69	□□□□□ -0.22
HMGN1-215	ENST00000485550	IFT57	Q9NWB7	429 aa		13.69	□□□□□ -0.22
HMGN1-215	ENST00000485550	GGA3	Q9NZ52	723 aa		13.69	□□□□□ -0.22
HMGN1-215	ENST00000485550	RTL9	Q8NET4	1388 aa		13.69	□□□□□ -0.22
HMGN1-215	ENST00000485550	ECE2	O60344	883 aa		13.68	□□□□□ -0.22
HMGN1-215	ENST00000485550	DOK7	Q18PE1	504 aa		13.68	□□□□□ -0.22
HMGN1-215	ENST00000485550	RASAL3	Q86YV0	1011 aa		13.68	□□□□□ -0.22
HMGN1-215	ENST00000485550	SULF1	Q8IWU6	871 aa		13.68	□□□□□ -0.22
HMGN1-215	ENST00000485550	C8orf58	Q8NAV2	365 aa		13.68	□□□□□ -0.22
HMGN1-215	ENST00000485550	CDCA5	Q96FF9	252 aa		13.68	□□□□□ -0.22
HMGN1-215	ENST00000485550	HDAC9	Q9UKV0	1011 aa		13.68	□□□□□ -0.22
HMGN1-215	ENST00000485550	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.68	□□□□□ -0.22
HMGN1-215	ENST00000485550	KIAA0100	Q14667	2235 aa	Known RBP	13.68	□□□□□ -0.22
HMGN1-215	ENST00000485550	PAPPA2	Q9BXP8	1791 aa		13.68	□□□□□ -0.22
HMGN1-215	ENST00000485550	C6orf229	H3BNL8	230 aa		13.67	□□□□□ -0.22
HMGN1-215	ENST00000485550	TBC1D8	O95759	1140 aa		13.67	□□□□□ -0.22
HMGN1-215	ENST00000485550	POLL	Q9UGP5	575 aa		13.67	□□□□□ -0.22
HMGN1-215	ENST00000485550	RPS12	P25398	132 aa	Known RBP	13.66	□□□□□ -0.22
HMGN1-215	ENST00000485550	CALD1	Q05682	793 aa	Known RBP	13.66	□□□□□ -0.22
HMGN1-215	ENST00000485550	GOLGA2	Q08379	1002 aa		13.66	□□□□□ -0.22
HMGN1-215	ENST00000485550	ZNF296	Q8WUU4	475 aa	Predicted RBP	13.66	□□□□□ -0.22
HMGN1-215	ENST00000485550	JARID2	Q92833	1246 aa	Predicted RBP	13.66	□□□□□ -0.22
HMGN1-215	ENST00000485550	CELF1	Q92879	486 aa	Known RBP	13.66	□□□□□ -0.22
HMGN1-215	ENST00000485550	MYD88	Q99836	296 aa		13.66	□□□□□ -0.22
HMGN1-215	ENST00000485550	IRS4	O14654	1257 aa	Predicted RBP	13.65	□□□□□ -0.22
HMGN1-215	ENST00000485550	GPSM2	P81274	684 aa		13.65	□□□□□ -0.22
HMGN1-215	ENST00000485550	MOB2	Q70IA6	237 aa		13.65	□□□□□ -0.22
HMGN1-215	ENST00000485550	TMC4	Q7Z404	712 aa		13.65	□□□□□ -0.22
HMGN1-215	ENST00000485550	TSPYL6	Q8N831	410 aa		13.65	□□□□□ -0.22
HMGN1-215	ENST00000485550	TSR2	Q969E8	191 aa	Known RBP	13.65	□□□□□ -0.22
HMGN1-215	ENST00000485550	SCAF8	Q9UPN6	1271 aa	Known RBP	13.65	□□□□□ -0.22
HMGN1-215	ENST00000485550	SF3B3	Q15393	1217 aa	Known RBP	13.64	□□□□□ -0.23

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