RNA–Protein interactions for RNA: ENST00000483414.1

LIMK1-205, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 3,374 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-205ENST00000483414 ZNF594Q96JF6 807 aaPredicted RBP11.9□□□□□ -0.5
LIMK1-205ENST00000483414 PUS3Q9BZE2 481 aaKnown RBP11.9□□□□□ -0.5
LIMK1-205ENST00000483414 FBXO3Q9UK99 471 aa11.9□□□□□ -0.5
LIMK1-205ENST00000483414 SEC24BO95487 1268 aa11.9□□□□□ -0.51
LIMK1-205ENST00000483414 NUCB1Q02818 461 aa11.9□□□□□ -0.51
LIMK1-205ENST00000483414 CRAMP1Q96RY5 1269 aa11.9□□□□□ -0.51
LIMK1-205ENST00000483414 HDAC5Q9UQL6 1122 aa11.9□□□□□ -0.51
LIMK1-205ENST00000483414 ATF5Q9Y2D1 282 aaPredicted RBP11.9□□□□□ -0.51
LIMK1-205ENST00000483414 AK9Q5TCS8 1911 aa11.89□□□□□ -0.51
LIMK1-205ENST00000483414 CCDC152Q4G0S7 254 aa11.89□□□□□ -0.51
LIMK1-205ENST00000483414 LRRC24Q50LG9 513 aa11.89□□□□□ -0.51
LIMK1-205ENST00000483414 BECN1Q14457 450 aa11.89□□□□□ -0.51
LIMK1-205ENST00000483414 CCDC88AQ3V6T2 1871 aa11.89□□□□□ -0.51
LIMK1-205ENST00000483414 MYH7P12883 1935 aa11.89□□□□□ -0.51
LIMK1-205ENST00000483414 STYK1Q6J9G0 422 aa11.88□□□□□ -0.51
LIMK1-205ENST00000483414 NLRP3Q96P20 1036 aa11.88□□□□□ -0.51
LIMK1-205ENST00000483414 SCN9AQ15858 1988 aa11.88□□□□□ -0.51
LIMK1-205ENST00000483414 GRAPQ13588 217 aa11.88□□□□□ -0.51
LIMK1-205ENST00000483414 GRAPLQ8TC17 118 aaPredicted RBP11.88□□□□□ -0.51
LIMK1-205ENST00000483414 GCC1Q96CN9 775 aa11.88□□□□□ -0.51
LIMK1-205ENST00000483414 BSDC1Q9NW68 430 aaPredicted RBP11.88□□□□□ -0.51
LIMK1-205ENST00000483414 FGFR2P21802 821 aa11.88□□□□□ -0.51
LIMK1-205ENST00000483414 RWDD1Q9H446 243 aaPredicted RBP11.88□□□□□ -0.51
LIMK1-205ENST00000483414 ZBTB22O15209 634 aa11.87□□□□□ -0.51
LIMK1-205ENST00000483414 HSP90B1P14625 803 aaKnown RBP11.87□□□□□ -0.51
LIMK1-205ENST00000483414 PDE6BP35913 854 aa11.87□□□□□ -0.51
LIMK1-205ENST00000483414 CD2APQ9Y5K6 639 aa11.87□□□□□ -0.51
LIMK1-205ENST00000483414 MAST2Q6P0Q8 1798 aa11.87□□□□□ -0.51
LIMK1-205ENST00000483414 EYA2O00167 538 aa11.87□□□□□ -0.51
LIMK1-205ENST00000483414 PDZRN3Q9UPQ7 1066 aa11.87□□□□□ -0.51
LIMK1-205ENST00000483414 EXOC6BQ9Y2D4 811 aa11.87□□□□□ -0.51
LIMK1-205ENST00000483414 NPR1P16066 1061 aa11.87□□□□□ -0.51
LIMK1-205ENST00000483414 IFIT5Q13325 482 aaKnown RBP11.87□□□□□ -0.51
LIMK1-205ENST00000483414 CCDC85AQ96PX6 553 aaPredicted RBP11.87□□□□□ -0.51
LIMK1-205ENST00000483414 CHRNA5P30532 468 aa11.86□□□□□ -0.51
LIMK1-205ENST00000483414 TGFB2P61812 414 aa11.86□□□□□ -0.51
LIMK1-205ENST00000483414 TIAM2Q8IVF5 1701 aa11.86□□□□□ -0.51
LIMK1-205ENST00000483414 ANKRD18BA2A2Z9 1011 aa11.86□□□□□ -0.51
LIMK1-205ENST00000483414 WTIPA6NIX2 430 aaPredicted RBP11.86□□□□□ -0.51
LIMK1-205ENST00000483414 MFAP1P55081 439 aaKnown RBP11.86□□□□□ -0.51
LIMK1-205ENST00000483414 MASTLQ96GX5 879 aa11.86□□□□□ -0.51
LIMK1-205ENST00000483414 COL1A1P02452 1464 aaPredicted RBP11.86□□□□□ -0.51
LIMK1-205ENST00000483414 MINPP1Q9UNW1 487 aa11.85□□□□□ -0.51
LIMK1-205ENST00000483414 RAB11FIP3O75154 756 aa11.85□□□□□ -0.51
LIMK1-205ENST00000483414 HMMRO75330 724 aa11.85□□□□□ -0.51
LIMK1-205ENST00000483414 CCDC57Q2TAC2 916 aa11.85□□□□□ -0.51
LIMK1-205ENST00000483414 RHPN1Q8TCX5 695 aa11.85□□□□□ -0.51
LIMK1-205ENST00000483414 GPR108Q9NPR9 543 aa11.85□□□□□ -0.51
LIMK1-205ENST00000483414 PODXL2Q9NZ53 605 aa11.85□□□□□ -0.51
LIMK1-205ENST00000483414 DPEP1P16444 411 aa11.84□□□□□ -0.51
LIMK1-205ENST00000483414 NLGN2Q8NFZ4 835 aa11.84□□□□□ -0.51
LIMK1-205ENST00000483414 SPON1Q9HCB6 807 aa11.84□□□□□ -0.51
LIMK1-205ENST00000483414 MROH5Q6ZUA9 1318 aa11.84□□□□□ -0.51
LIMK1-205ENST00000483414 IL15P40933 162 aaPredicted RBP11.84□□□□□ -0.51
LIMK1-205ENST00000483414 RPS8P62241 208 aaKnown RBP11.84□□□□□ -0.51
LIMK1-205ENST00000483414 TFCP2Q12800 502 aa11.84□□□□□ -0.51
LIMK1-205ENST00000483414 C2CD5Q86YS7 1000 aa11.84□□□□□ -0.51
LIMK1-205ENST00000483414 RBM17Q96I25 401 aaKnown RBP11.84□□□□□ -0.51
LIMK1-205ENST00000483414 OTUD7AQ8TE49 926 aaPredicted RBP11.83□□□□□ -0.52
LIMK1-205ENST00000483414 EAF2Q96CJ1 260 aaPredicted RBP11.83□□□□□ -0.52
LIMK1-205ENST00000483414 GZF1Q9H116 711 aaPredicted RBP11.83□□□□□ -0.52
LIMK1-205ENST00000483414 ATP6V0A2Q9Y487 856 aa11.83□□□□□ -0.52
LIMK1-205ENST00000483414 SMARCA5O60264 1052 aaPredicted RBP11.83□□□□□ -0.52
LIMK1-205ENST00000483414 SURF6O75683 361 aaKnown RBP11.83□□□□□ -0.52
LIMK1-205ENST00000483414 POLD1P28340 1107 aa11.83□□□□□ -0.52
LIMK1-205ENST00000483414 CHRNDQ07001 517 aa11.83□□□□□ -0.52
LIMK1-205ENST00000483414 OLFM4Q6UX06 510 aa11.83□□□□□ -0.52
LIMK1-205ENST00000483414 CHD1LQ86WJ1 897 aa11.83□□□□□ -0.52
LIMK1-205ENST00000483414 RTFDC1Q9BY42 306 aaPredicted RBP11.83□□□□□ -0.52
LIMK1-205ENST00000483414 SIL1Q9H173 461 aa11.83□□□□□ -0.52
LIMK1-205ENST00000483414 TLR7Q9NYK1 1049 aaKnown RBP11.83□□□□□ -0.52
LIMK1-205ENST00000483414 C15orf52Q6ZUT6 534 aaKnown RBP11.82□□□□□ -0.52
LIMK1-205ENST00000483414 CDC5LQ99459 802 aaKnown RBP11.82□□□□□ -0.52
LIMK1-205ENST00000483414 CDK5RAP2Q96SN8 1893 aa11.82□□□□□ -0.52
LIMK1-205ENST00000483414 A0A0G2JLW4 131 aa11.82□□□□□ -0.52
LIMK1-205ENST00000483414 BBOX1O75936 387 aa11.82□□□□□ -0.52
LIMK1-205ENST00000483414 PDE8BO95263 885 aa11.82□□□□□ -0.52
LIMK1-205ENST00000483414 PRPF40BQ6NWY9 871 aaKnown RBP11.82□□□□□ -0.52
LIMK1-205ENST00000483414 SP8Q8IXZ3 490 aa11.82□□□□□ -0.52
LIMK1-205ENST00000483414 C16orf71Q8IYS4 520 aaPredicted RBP11.82□□□□□ -0.52
LIMK1-205ENST00000483414 PKNOX2Q96KN3 472 aa11.82□□□□□ -0.52
LIMK1-205ENST00000483414 OSBPL3Q9H4L5 887 aa11.82□□□□□ -0.52
LIMK1-205ENST00000483414 ZNF804BA4D1E1 1349 aa11.82□□□□□ -0.52
LIMK1-205ENST00000483414 TNNI3KQ59H18 835 aa11.82□□□□□ -0.52
LIMK1-205ENST00000483414 DDX46Q7L014 1031 aaKnown RBP11.82□□□□□ -0.52
LIMK1-205ENST00000483414 ANKRD18AQ8IVF6 992 aa11.82□□□□□ -0.52
LIMK1-205ENST00000483414 KIF1BPQ96EK5 621 aa11.82□□□□□ -0.52
LIMK1-205ENST00000483414 LRRCC1Q9C099 1032 aa11.82□□□□□ -0.52
LIMK1-205ENST00000483414 FPGT-TNNI3KV9GXZ4 949 aa11.82□□□□□ -0.52
LIMK1-205ENST00000483414 ADAMTSL1Q8N6G6 1762 aa11.82□□□□□ -0.52
LIMK1-205ENST00000483414 PPEF1O14829 653 aaPredicted RBP11.81□□□□□ -0.52
LIMK1-205ENST00000483414 GTF2E1P29083 439 aaPredicted RBP11.81□□□□□ -0.52
LIMK1-205ENST00000483414 LDHAL6AQ6ZMR3 332 aa11.81□□□□□ -0.52
LIMK1-205ENST00000483414 STAP2Q9UGK3 403 aa11.81□□□□□ -0.52
LIMK1-205ENST00000483414 DBNLQ9UJU6 430 aaKnown RBP11.81□□□□□ -0.52
LIMK1-205ENST00000483414 FOCADQ5VW36 1801 aa11.81□□□□□ -0.52
LIMK1-205ENST00000483414 H0YIN7 160 aa11.81□□□□□ -0.52
LIMK1-205ENST00000483414 GPSM2P81274 684 aa11.81□□□□□ -0.52
LIMK1-205ENST00000483414 TMC4Q7Z404 712 aa11.81□□□□□ -0.52
LIMK1-205ENST00000483414 RPGRQ92834 1020 aaKnown RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms