RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 BCL2L13Q9BXK5 485 aa19.01■□□□□ 0.63
LIMS3-204ENST00000482065 PODXL2Q9NZ53 605 aa19.01■□□□□ 0.63
LIMS3-204ENST00000482065 ANKIB1Q9P2G1 1089 aa19.01■□□□□ 0.63
LIMS3-204ENST00000482065 SPEF2Q9C093 1822 aa19.01■□□□□ 0.63
LIMS3-204ENST00000482065 ECE2O60344 883 aa19■□□□□ 0.63
LIMS3-204ENST00000482065 CASP7P55210 303 aa19■□□□□ 0.63
LIMS3-204ENST00000482065 CDC5LQ99459 802 aaKnown RBP19■□□□□ 0.63
LIMS3-204ENST00000482065 ADARB2Q9NS39 739 aaKnown RBP19■□□□□ 0.63
LIMS3-204ENST00000482065 MKRN1Q9UHC7 482 aaKnown RBP19■□□□□ 0.63
LIMS3-204ENST00000482065 GGA1Q9UJY5 639 aa19■□□□□ 0.63
LIMS3-204ENST00000482065 SHTN1A0MZ66 631 aa18.99■□□□□ 0.63
LIMS3-204ENST00000482065 PSMD14O00487 310 aa18.99■□□□□ 0.63
LIMS3-204ENST00000482065 KCNQ5Q9NR82 932 aa18.99■□□□□ 0.63
LIMS3-204ENST00000482065 ZBTB12Q9Y330 459 aaPredicted RBP18.99■□□□□ 0.63
LIMS3-204ENST00000482065 RTL9Q8NET4 1388 aa18.98■□□□□ 0.63
LIMS3-204ENST00000482065 TMEM88BA6NKF7 163 aa18.98■□□□□ 0.63
LIMS3-204ENST00000482065 FMR1Q06787 632 aaKnown RBP eCLIP18.98■□□□□ 0.63
LIMS3-204ENST00000482065 PLA2G12BQ9BX93 195 aa18.98■□□□□ 0.63
LIMS3-204ENST00000482065 ZC3H12CQ9C0D7 883 aaKnown RBP18.98■□□□□ 0.63
LIMS3-204ENST00000482065 XDHP47989 1333 aa18.98■□□□□ 0.63
LIMS3-204ENST00000482065 SCN9AQ15858 1988 aa18.97■□□□□ 0.63
LIMS3-204ENST00000482065 FAM161AQ3B820 660 aa18.97■□□□□ 0.63
LIMS3-204ENST00000482065 BEND3Q5T5X7 828 aa18.97■□□□□ 0.63
LIMS3-204ENST00000482065 TRPM4Q8TD43 1214 aa18.97■□□□□ 0.63
LIMS3-204ENST00000482065 WTIPA6NIX2 430 aaPredicted RBP18.96■□□□□ 0.63
LIMS3-204ENST00000482065 BSDC1Q9NW68 430 aaPredicted RBP18.96■□□□□ 0.63
LIMS3-204ENST00000482065 CNOT7Q9UIV1 285 aaKnown RBP18.96■□□□□ 0.63
LIMS3-204ENST00000482065 CNTNAP1P78357 1384 aa18.95■□□□□ 0.62
LIMS3-204ENST00000482065 TRAF5O00463 557 aa18.95■□□□□ 0.62
LIMS3-204ENST00000482065 ITGA6P23229 1130 aa18.95■□□□□ 0.62
LIMS3-204ENST00000482065 ATP2B4P23634 1241 aa18.95■□□□□ 0.62
LIMS3-204ENST00000482065 HIRAP54198 1017 aaPredicted RBP18.95■□□□□ 0.62
LIMS3-204ENST00000482065 MICALL2Q8IY33 904 aa18.95■□□□□ 0.62
LIMS3-204ENST00000482065 MINPP1Q9UNW1 487 aa18.95■□□□□ 0.62
LIMS3-204ENST00000482065 G3V3G9 751 aa18.94■□□□□ 0.62
LIMS3-204ENST00000482065 CSF1RP07333 972 aa18.94■□□□□ 0.62
LIMS3-204ENST00000482065 DCAF8Q5TAQ9 597 aa18.94■□□□□ 0.62
LIMS3-204ENST00000482065 E9PSI1 815 aa18.93■□□□□ 0.62
LIMS3-204ENST00000482065 H7C1D1 291 aa18.93■□□□□ 0.62
LIMS3-204ENST00000482065 IGHMBP2P38935 993 aaKnown RBP18.93■□□□□ 0.62
LIMS3-204ENST00000482065 SLC4A10Q6U841 1118 aa18.93■□□□□ 0.62
LIMS3-204ENST00000482065 DPF2Q92785 391 aa18.93■□□□□ 0.62
LIMS3-204ENST00000482065 SLFN5Q08AF3 891 aa18.92■□□□□ 0.62
LIMS3-204ENST00000482065 SAMD7Q7Z3H4 446 aa18.92■□□□□ 0.62
LIMS3-204ENST00000482065 CDCA7LQ96GN5 454 aa18.92■□□□□ 0.62
LIMS3-204ENST00000482065 GRM8O00222 908 aa18.91■□□□□ 0.62
LIMS3-204ENST00000482065 EGFRP00533 1210 aa18.91■□□□□ 0.62
LIMS3-204ENST00000482065 VIL1P09327 827 aaKnown RBP18.91■□□□□ 0.62
LIMS3-204ENST00000482065 HSPA1AP0DMV8 641 aaKnown RBP18.91■□□□□ 0.62
LIMS3-204ENST00000482065 HSPA1BP0DMV9 641 aaKnown RBP18.91■□□□□ 0.62
LIMS3-204ENST00000482065 RPS12P25398 132 aaKnown RBP18.91■□□□□ 0.62
LIMS3-204ENST00000482065 CCT4P50991 539 aaKnown RBP18.91■□□□□ 0.62
LIMS3-204ENST00000482065 FOXO4P98177 505 aa18.91■□□□□ 0.62
LIMS3-204ENST00000482065 MRPL50Q8N5N7 158 aaKnown RBP18.91■□□□□ 0.62
LIMS3-204ENST00000482065 MPHOSPH8Q99549 860 aa18.91■□□□□ 0.62
LIMS3-204ENST00000482065 GLIS2Q9BZE0 524 aaPredicted RBP18.91■□□□□ 0.62
LIMS3-204ENST00000482065 PGAP2Q9UHJ9 254 aa18.91■□□□□ 0.62
LIMS3-204ENST00000482065 TRPM7Q96QT4 1865 aa18.9■□□□□ 0.62
LIMS3-204ENST00000482065 CCER2I3L3R5 266 aa18.9■□□□□ 0.62
LIMS3-204ENST00000482065 VEGFBP49765 207 aa18.9■□□□□ 0.62
LIMS3-204ENST00000482065 TBC1D10BQ4KMP7 808 aaPredicted RBP18.9■□□□□ 0.62
LIMS3-204ENST00000482065 EPHA10Q5JZY3 1008 aa18.9■□□□□ 0.62
LIMS3-204ENST00000482065 ABT1Q9ULW3 272 aaKnown RBP18.9■□□□□ 0.62
LIMS3-204ENST00000482065 CHMP3Q9Y3E7 222 aa18.9■□□□□ 0.62
LIMS3-204ENST00000482065 MED23Q9ULK4 1368 aa18.9■□□□□ 0.62
LIMS3-204ENST00000482065 PSME4Q14997 1843 aa18.89■□□□□ 0.61
LIMS3-204ENST00000482065 ANKRD18BA2A2Z9 1011 aa18.89■□□□□ 0.61
LIMS3-204ENST00000482065 RBM26Q5T8P6 1007 aaKnown RBP18.89■□□□□ 0.61
LIMS3-204ENST00000482065 CST9Q5W186 159 aa18.89■□□□□ 0.61
LIMS3-204ENST00000482065 ZC3H15Q8WU90 426 aaKnown RBP18.89■□□□□ 0.61
LIMS3-204ENST00000482065 SRCIN1Q9C0H9 1055 aa18.89■□□□□ 0.61
LIMS3-204ENST00000482065 RASSF10A6NK89 507 aa18.88■□□□□ 0.61
LIMS3-204ENST00000482065 ALDH1L1O75891 902 aa18.88■□□□□ 0.61
LIMS3-204ENST00000482065 KLRK1P26718 216 aa18.88■□□□□ 0.61
LIMS3-204ENST00000482065 RSBN1LQ6PCB5 846 aaPredicted RBP18.88■□□□□ 0.61
LIMS3-204ENST00000482065 LMBR1LQ6UX01 489 aa18.88■□□□□ 0.61
LIMS3-204ENST00000482065 TXNRD3Q86VQ6 643 aa18.88■□□□□ 0.61
LIMS3-204ENST00000482065 SSH1Q8WYL5 1049 aa18.88■□□□□ 0.61
LIMS3-204ENST00000482065 C9orf78Q9NZ63 289 aaPredicted RBP18.88■□□□□ 0.61
LIMS3-204ENST00000482065 CHRNDQ07001 517 aa18.87■□□□□ 0.61
LIMS3-204ENST00000482065 IFIT5Q13325 482 aaKnown RBP18.87■□□□□ 0.61
LIMS3-204ENST00000482065 DEFB115Q30KQ5 88 aa18.87■□□□□ 0.61
LIMS3-204ENST00000482065 PODNQ7Z5L7 613 aa18.87■□□□□ 0.61
LIMS3-204ENST00000482065 LEMD3Q9Y2U8 911 aa18.87■□□□□ 0.61
LIMS3-204ENST00000482065 ZNF804BA4D1E1 1349 aa18.86■□□□□ 0.61
LIMS3-204ENST00000482065 CELF2O95319 508 aaKnown RBP18.86■□□□□ 0.61
LIMS3-204ENST00000482065 KIF4BQ2VIQ3 1234 aa18.86■□□□□ 0.61
LIMS3-204ENST00000482065 DLK2Q6UY11 383 aa18.86■□□□□ 0.61
LIMS3-204ENST00000482065 ANKRD2Q9GZV1 360 aa18.86■□□□□ 0.61
LIMS3-204ENST00000482065 ZNF609O15014 1411 aa18.85■□□□□ 0.61
LIMS3-204ENST00000482065 USP17L3A6NCW0 530 aa18.85■□□□□ 0.61
LIMS3-204ENST00000482065 USP17L4A6NCW7 530 aa18.85■□□□□ 0.61
LIMS3-204ENST00000482065 SNAP23O00161 211 aa18.85■□□□□ 0.61
LIMS3-204ENST00000482065 CDC37L1Q7L3B6 337 aa18.85■□□□□ 0.61
LIMS3-204ENST00000482065 USP17L1Q7RTZ2 530 aa18.85■□□□□ 0.61
LIMS3-204ENST00000482065 USP48Q86UV5 1035 aa18.85■□□□□ 0.61
LIMS3-204ENST00000482065 SUCLG2Q96I99 432 aa18.85■□□□□ 0.61
LIMS3-204ENST00000482065 ZNF594Q96JF6 807 aaPredicted RBP18.85■□□□□ 0.61
LIMS3-204ENST00000482065 MXD3Q9BW11 206 aa18.85■□□□□ 0.61
LIMS3-204ENST00000482065 ZNF408Q9H9D4 720 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms