RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 CCDC150Q8NCX0 1101 aa21.87■■□□□ 1.09
CCDC88B-207ENST00000479965 TSPYL1Q9H0U9 437 aa21.87■■□□□ 1.09
CCDC88B-207ENST00000479965 OSBPL5Q9H0X9 879 aaPredicted RBP21.87■■□□□ 1.09
CCDC88B-207ENST00000479965 RIMS1Q86UR5 1692 aaKnown RBP21.87■■□□□ 1.09
CCDC88B-207ENST00000479965 LMOD1P29536 600 aaPredicted RBP21.87■■□□□ 1.09
CCDC88B-207ENST00000479965 ETF1P62495 437 aaKnown RBP21.87■■□□□ 1.09
CCDC88B-207ENST00000479965 GIGYF1O75420 1035 aaPredicted RBP21.86■■□□□ 1.09
CCDC88B-207ENST00000479965 TXLNBQ8N3L3 684 aa21.86■■□□□ 1.09
CCDC88B-207ENST00000479965 NDUFB9Q9Y6M9 179 aa21.86■■□□□ 1.09
CCDC88B-207ENST00000479965 SCRN1Q12765 414 aa21.86■■□□□ 1.09
CCDC88B-207ENST00000479965 IMPACTQ9P2X3 320 aa21.86■■□□□ 1.09
CCDC88B-207ENST00000479965 ZRANB2O95218 330 aaKnown RBP eCLIP21.86■■□□□ 1.09
CCDC88B-207ENST00000479965 GPS2Q13227 327 aa21.86■■□□□ 1.09
CCDC88B-207ENST00000479965 G3BP1Q13283 466 aaKnown RBP eCLIP21.86■■□□□ 1.09
CCDC88B-207ENST00000479965 SF3A1Q15459 793 aaKnown RBP21.86■■□□□ 1.09
CCDC88B-207ENST00000479965 RCOR1Q9UKL0 485 aa21.86■■□□□ 1.09
CCDC88B-207ENST00000479965 PSDA5PKW4 1024 aaPredicted RBP21.85■■□□□ 1.09
CCDC88B-207ENST00000479965 GOLGA8FQ08AF8 430 aa21.85■■□□□ 1.09
CCDC88B-207ENST00000479965 GOLGA8DPQ0D2H9 430 aa21.85■■□□□ 1.09
CCDC88B-207ENST00000479965 NUTM2GQ5VZR2 741 aa21.85■■□□□ 1.09
CCDC88B-207ENST00000479965 USHBP1Q8N6Y0 703 aa21.85■■□□□ 1.09
CCDC88B-207ENST00000479965 CCDC191Q8NCU4 936 aa21.85■■□□□ 1.09
CCDC88B-207ENST00000479965 SEC62Q99442 399 aaKnown RBP21.85■■□□□ 1.09
CCDC88B-207ENST00000479965 EVCP57679 992 aa21.85■■□□□ 1.09
CCDC88B-207ENST00000479965 CWF19L2Q2TBE0 894 aaKnown RBP21.85■■□□□ 1.09
CCDC88B-207ENST00000479965 CCDC129Q6ZRS4 1044 aa21.85■■□□□ 1.09
CCDC88B-207ENST00000479965 RSPH14Q9UHP6 348 aa21.85■■□□□ 1.09
CCDC88B-207ENST00000479965 ADD1P35611 737 aaKnown RBP21.84■■□□□ 1.09
CCDC88B-207ENST00000479965 ERC1Q8IUD2 1116 aa21.84■■□□□ 1.09
CCDC88B-207ENST00000479965 TRIM66O15016 1216 aa21.84■■□□□ 1.09
CCDC88B-207ENST00000479965 CHGBP05060 677 aa21.84■■□□□ 1.09
CCDC88B-207ENST00000479965 UTP14AQ9BVJ6 771 aaKnown RBP21.84■■□□□ 1.09
CCDC88B-207ENST00000479965 MLECQ14165 292 aa21.84■■□□□ 1.09
CCDC88B-207ENST00000479965 ZSCAN26Q16670 478 aa21.84■■□□□ 1.09
CCDC88B-207ENST00000479965 CCDC9Q9Y3X0 531 aaKnown RBP21.84■■□□□ 1.09
CCDC88B-207ENST00000479965 ADGRL3Q9HAR2 1447 aa21.83■■□□□ 1.09
CCDC88B-207ENST00000479965 SMC1AQ14683 1233 aaKnown RBP21.83■■□□□ 1.09
CCDC88B-207ENST00000479965 KLHDC4Q8TBB5 520 aa21.83■■□□□ 1.09
CCDC88B-207ENST00000479965 NCOA5Q9HCD5 579 aaKnown RBP21.83■■□□□ 1.09
CCDC88B-207ENST00000479965 SASH3O75995 380 aa21.83■■□□□ 1.08
CCDC88B-207ENST00000479965 LMAN1P49257 510 aa21.83■■□□□ 1.08
CCDC88B-207ENST00000479965 ENGASEQ8NFI3 743 aa21.83■■□□□ 1.08
CCDC88B-207ENST00000479965 ZNF396Q96N95 335 aaPredicted RBP21.83■■□□□ 1.08
CCDC88B-207ENST00000479965 XRN1Q8IZH2 1706 aaKnown RBP21.83■■□□□ 1.08
CCDC88B-207ENST00000479965 NPHP4O75161 1426 aaPredicted RBP21.83■■□□□ 1.08
CCDC88B-207ENST00000479965 HMG20BQ9P0W2 317 aa21.82■■□□□ 1.08
CCDC88B-207ENST00000479965 PTPDC1A2A3K4 754 aa21.82■■□□□ 1.08
CCDC88B-207ENST00000479965 RASSF4Q9H2L5 321 aa21.82■■□□□ 1.08
CCDC88B-207ENST00000479965 KCND1Q9NSA2 647 aa21.82■■□□□ 1.08
CCDC88B-207ENST00000479965 SASH1O94885 1247 aa21.82■■□□□ 1.08
CCDC88B-207ENST00000479965 MRPS27Q92552 414 aaKnown RBP21.82■■□□□ 1.08
CCDC88B-207ENST00000479965 KCNQ3O43525 872 aa21.81■■□□□ 1.08
CCDC88B-207ENST00000479965 TAF5LO75529 589 aa21.81■■□□□ 1.08
CCDC88B-207ENST00000479965 NDUFA8P51970 172 aa21.81■■□□□ 1.08
CCDC88B-207ENST00000479965 LCMT1Q9UIC8 334 aa21.81■■□□□ 1.08
CCDC88B-207ENST00000479965 MAP3K2Q9Y2U5 619 aa21.81■■□□□ 1.08
CCDC88B-207ENST00000479965 APOBRQ0VD83 1088 aa21.81■■□□□ 1.08
CCDC88B-207ENST00000479965 PCDHA7Q9UN72 937 aa21.81■■□□□ 1.08
CCDC88B-207ENST00000479965 TADA3O75528 432 aa21.8■■□□□ 1.08
CCDC88B-207ENST00000479965 ATP1A3P13637 1013 aa21.8■■□□□ 1.08
CCDC88B-207ENST00000479965 TEFQ10587 303 aa21.8■■□□□ 1.08
CCDC88B-207ENST00000479965 KRT32Q14532 448 aa21.8■■□□□ 1.08
CCDC88B-207ENST00000479965 KIAA1468Q9P260 1216 aa21.8■■□□□ 1.08
CCDC88B-207ENST00000479965 ZSWIM4Q9H7M6 989 aa21.8■■□□□ 1.08
CCDC88B-207ENST00000479965 IGSF1Q8N6C5 1336 aa21.79■■□□□ 1.08
CCDC88B-207ENST00000479965 NRKQ7Z2Y5 1582 aa21.79■■□□□ 1.08
CCDC88B-207ENST00000479965 FLT4P35916 1363 aa21.79■■□□□ 1.08
CCDC88B-207ENST00000479965 TBC1D8O95759 1140 aa21.79■■□□□ 1.08
CCDC88B-207ENST00000479965 SERPINC1P01008 464 aa21.79■■□□□ 1.08
CCDC88B-207ENST00000479965 PXDNLA1KZ92 1463 aa21.79■■□□□ 1.08
CCDC88B-207ENST00000479965 POLR3DP05423 398 aaPredicted RBP21.79■■□□□ 1.08
CCDC88B-207ENST00000479965 OTUD7BQ6GQQ9 843 aa21.79■■□□□ 1.08
CCDC88B-207ENST00000479965 NFATC2IPQ8NCF5 419 aa21.79■■□□□ 1.08
CCDC88B-207ENST00000479965 NSUN7Q8NE18 718 aaKnown RBP21.79■■□□□ 1.08
CCDC88B-207ENST00000479965 MYO1CO00159 1063 aa21.78■■□□□ 1.08
CCDC88B-207ENST00000479965 STK38Q15208 465 aa21.78■■□□□ 1.08
CCDC88B-207ENST00000479965 CFAP100Q494V2 611 aa21.78■■□□□ 1.08
CCDC88B-207ENST00000479965 OVOS2A0A0J9YW53 1432 aa21.78■■□□□ 1.08
CCDC88B-207ENST00000479965 OVOS2Q6IE36 1432 aa21.78■■□□□ 1.08
CCDC88B-207ENST00000479965 CEP170BQ9Y4F5 1589 aaPredicted RBP21.78■■□□□ 1.08
CCDC88B-207ENST00000479965 EFCAB8A8MWE9 144 aa21.78■■□□□ 1.08
CCDC88B-207ENST00000479965 FANCGO15287 622 aa21.78■■□□□ 1.08
CCDC88B-207ENST00000479965 SLC3A2P08195 630 aaKnown RBP21.78■■□□□ 1.08
CCDC88B-207ENST00000479965 FANCCQ00597 558 aa21.78■■□□□ 1.08
CCDC88B-207ENST00000479965 CHST3Q7LGC8 479 aa21.78■■□□□ 1.08
CCDC88B-207ENST00000479965 CYP21A2P08686 494 aa21.78■■□□□ 1.08
CCDC88B-207ENST00000479965 LRRFIP1Q32MZ4 808 aaKnown RBP21.78■■□□□ 1.08
CCDC88B-207ENST00000479965 HSP90AA4PQ58FG1 418 aa21.78■■□□□ 1.08
CCDC88B-207ENST00000479965 CC2D1AQ6P1N0 951 aaPredicted RBP21.78■■□□□ 1.08
CCDC88B-207ENST00000479965 FMR1NBQ8N0W7 255 aaPredicted RBP21.78■■□□□ 1.08
CCDC88B-207ENST00000479965 ALDH8A1Q9H2A2 487 aaPredicted RBP21.78■■□□□ 1.08
CCDC88B-207ENST00000479965 ARFGAP3Q9NP61 516 aa21.78■■□□□ 1.08
CCDC88B-207ENST00000479965 PHLPP2Q6ZVD8 1323 aa21.77■■□□□ 1.08
CCDC88B-207ENST00000479965 GNG11P61952 73 aa21.77■■□□□ 1.08
CCDC88B-207ENST00000479965 AIMP1Q12904 312 aaKnown RBP21.77■■□□□ 1.08
CCDC88B-207ENST00000479965 TRIM65Q6PJ69 517 aa21.77■■□□□ 1.08
CCDC88B-207ENST00000479965 CCDC158Q5M9N0 1113 aa21.76■■□□□ 1.07
CCDC88B-207ENST00000479965 NGDNQ8NEJ9 315 aaKnown RBP21.76■■□□□ 1.07
CCDC88B-207ENST00000479965 AK7Q96M32 723 aa21.76■■□□□ 1.07
CCDC88B-207ENST00000479965 BICC1Q9H694 974 aaKnown RBP21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms