RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 LMO7Q8WWI1 1683 aa8.27□□□□□ -1.09
SF3B1-209ENST00000479532 FAM208AQ9UK61 1670 aaKnown RBP8.27□□□□□ -1.09
SF3B1-209ENST00000479532 AFF2P51816 1311 aa8.27□□□□□ -1.09
SF3B1-209ENST00000479532 MAP3K19Q56UN5 1328 aa8.27□□□□□ -1.09
SF3B1-209ENST00000479532 RGPD5Q99666 1765 aa8.26□□□□□ -1.09
SF3B1-209ENST00000479532 SLIT2O94813 1529 aa8.26□□□□□ -1.09
SF3B1-209ENST00000479532 FAM83GA6ND36 823 aa8.26□□□□□ -1.09
SF3B1-209ENST00000479532 GPR37L1O60883 481 aa8.26□□□□□ -1.09
SF3B1-209ENST00000479532 CSB-PGBD3P0DP91 1061 aa8.26□□□□□ -1.09
SF3B1-209ENST00000479532 IRF5Q13568 498 aa8.26□□□□□ -1.09
SF3B1-209ENST00000479532 UNC5CLQ8IV45 518 aa8.26□□□□□ -1.09
SF3B1-209ENST00000479532 Q8N3U1 123 aa8.26□□□□□ -1.09
SF3B1-209ENST00000479532 EPS8L1Q8TE68 723 aa8.26□□□□□ -1.09
SF3B1-209ENST00000479532 IP6K1Q92551 441 aa8.26□□□□□ -1.09
SF3B1-209ENST00000479532 CFAP53Q96M91 514 aa8.26□□□□□ -1.09
SF3B1-209ENST00000479532 CCDC9Q9Y3X0 531 aaKnown RBP8.26□□□□□ -1.09
SF3B1-209ENST00000479532 NRAPQ86VF7 1730 aa8.26□□□□□ -1.09
SF3B1-209ENST00000479532 COL18A1P39060 1754 aa8.25□□□□□ -1.09
SF3B1-209ENST00000479532 K7ELQ4 463 aaPredicted RBP8.25□□□□□ -1.09
SF3B1-209ENST00000479532 HOXC9P31274 260 aa8.25□□□□□ -1.09
SF3B1-209ENST00000479532 KCNH2Q12809 1159 aa8.25□□□□□ -1.09
SF3B1-209ENST00000479532 NR5A1Q13285 461 aa8.25□□□□□ -1.09
SF3B1-209ENST00000479532 VWA5B2Q8N398 1253 aa8.25□□□□□ -1.09
SF3B1-209ENST00000479532 STRN4Q9NRL3 753 aa8.25□□□□□ -1.09
SF3B1-209ENST00000479532 TRPC5Q9UL62 973 aaPredicted RBP8.25□□□□□ -1.09
SF3B1-209ENST00000479532 CDK12Q9NYV4 1490 aaPredicted RBP8.25□□□□□ -1.09
SF3B1-209ENST00000479532 INSRP06213 1382 aa8.24□□□□□ -1.09
SF3B1-209ENST00000479532 PARD3Q8TEW0 1356 aa8.24□□□□□ -1.09
SF3B1-209ENST00000479532 KRTAP9-6A0A140TA67 174 aa8.24□□□□□ -1.09
SF3B1-209ENST00000479532 CDC14CA4D256 554 aa8.24□□□□□ -1.09
SF3B1-209ENST00000479532 PTPRNQ16849 979 aa8.24□□□□□ -1.09
SF3B1-209ENST00000479532 CCDC155Q8N6L0 562 aa8.24□□□□□ -1.09
SF3B1-209ENST00000479532 ANKRD24Q8TF21 1146 aa8.24□□□□□ -1.09
SF3B1-209ENST00000479532 GLMNQ92990 594 aa8.24□□□□□ -1.09
SF3B1-209ENST00000479532 CALR3Q96L12 384 aaKnown RBP8.24□□□□□ -1.09
SF3B1-209ENST00000479532 ENAMQ9NRM1 1142 aa8.24□□□□□ -1.09
SF3B1-209ENST00000479532 POLKQ9UBT6 870 aa8.24□□□□□ -1.09
SF3B1-209ENST00000479532 EMILIN1Q9Y6C2 1016 aa8.24□□□□□ -1.09
SF3B1-209ENST00000479532 COL5A2P05997 1499 aaPredicted RBP8.24□□□□□ -1.09
SF3B1-209ENST00000479532 MYBBP1AQ9BQG0 1328 aaKnown RBP8.24□□□□□ -1.09
SF3B1-209ENST00000479532 CAMTA1Q9Y6Y1 1673 aa8.24□□□□□ -1.09
SF3B1-209ENST00000479532 PEAK1Q9H792 1746 aa8.23□□□□□ -1.09
SF3B1-209ENST00000479532 FIGNL2A6NMB9 653 aa8.23□□□□□ -1.09
SF3B1-209ENST00000479532 TTLL8A6PVC2 850 aa8.23□□□□□ -1.09
SF3B1-209ENST00000479532 PHF20L1A8MW92 1017 aa8.23□□□□□ -1.09
SF3B1-209ENST00000479532 FBLN1P23142 703 aa8.23□□□□□ -1.09
SF3B1-209ENST00000479532 PPP2R1AP30153 589 aa8.23□□□□□ -1.09
SF3B1-209ENST00000479532 MTHFSP49914 203 aa8.23□□□□□ -1.09
SF3B1-209ENST00000479532 NR6A1Q15406 480 aa8.23□□□□□ -1.09
SF3B1-209ENST00000479532 DESI1Q6ICB0 168 aa8.23□□□□□ -1.09
SF3B1-209ENST00000479532 TOM1L2Q6ZVM7 507 aa8.23□□□□□ -1.09
SF3B1-209ENST00000479532 SV2AQ7L0J3 742 aa8.23□□□□□ -1.09
SF3B1-209ENST00000479532 LTV1Q96GA3 475 aaPredicted RBP8.23□□□□□ -1.09
SF3B1-209ENST00000479532 DCAF5Q96JK2 942 aa8.23□□□□□ -1.09
SF3B1-209ENST00000479532 CDK15Q96Q40 435 aa8.23□□□□□ -1.09
SF3B1-209ENST00000479532 TSEN34Q9BSV6 310 aaKnown RBP8.23□□□□□ -1.09
SF3B1-209ENST00000479532 PRKRIP1Q9H875 184 aaPredicted RBP8.23□□□□□ -1.09
SF3B1-209ENST00000479532 WDR17Q8IZU2 1322 aa8.23□□□□□ -1.09
SF3B1-209ENST00000479532 CRB1P82279 1406 aa8.22□□□□□ -1.09
SF3B1-209ENST00000479532 BCL9LQ86UU0 1499 aa8.22□□□□□ -1.09
SF3B1-209ENST00000479532 VPS72Q15906 364 aa8.22□□□□□ -1.09
SF3B1-209ENST00000479532 WASHC4Q2M389 1173 aa8.22□□□□□ -1.09
SF3B1-209ENST00000479532 MEIOBQ8N635 442 aa8.22□□□□□ -1.09
SF3B1-209ENST00000479532 QTRT2Q9H974 415 aaKnown RBP8.22□□□□□ -1.09
SF3B1-209ENST00000479532 NUDCQ9Y266 331 aa8.22□□□□□ -1.09
SF3B1-209ENST00000479532 ATRNO75882 1429 aa8.21□□□□□ -1.09
SF3B1-209ENST00000479532 DIAPH1O60610 1272 aaKnown RBP8.21□□□□□ -1.1
SF3B1-209ENST00000479532 NR3C2P08235 984 aa8.21□□□□□ -1.1
SF3B1-209ENST00000479532 VAC14Q08AM6 782 aa8.21□□□□□ -1.1
SF3B1-209ENST00000479532 HSP90AB2PQ58FF8 381 aa8.21□□□□□ -1.1
SF3B1-209ENST00000479532 DIEXFQ68CQ4 756 aaKnown RBP8.21□□□□□ -1.1
SF3B1-209ENST00000479532 LYPD8Q6UX82 237 aa8.21□□□□□ -1.1
SF3B1-209ENST00000479532 NLRP2Q9NX02 1062 aa8.21□□□□□ -1.1
SF3B1-209ENST00000479532 THRAP3Q9Y2W1 955 aaKnown RBP8.21□□□□□ -1.1
SF3B1-209ENST00000479532 RXRBP28702 533 aa8.2□□□□□ -1.1
SF3B1-209ENST00000479532 RBM6P78332 1123 aaKnown RBP8.2□□□□□ -1.1
SF3B1-209ENST00000479532 LARP1Q6PKG0 1096 aaKnown RBP8.2□□□□□ -1.1
SF3B1-209ENST00000479532 LYPD4Q6UWN0 246 aa8.2□□□□□ -1.1
SF3B1-209ENST00000479532 TCP11L2Q8N4U5 519 aa8.2□□□□□ -1.1
SF3B1-209ENST00000479532 BEND7Q8N7W2 519 aaPredicted RBP8.2□□□□□ -1.1
SF3B1-209ENST00000479532 CARD10Q9BWT7 1032 aa8.2□□□□□ -1.1
SF3B1-209ENST00000479532 USP35Q9P2H5 1018 aa8.2□□□□□ -1.1
SF3B1-209ENST00000479532 SPATA31A5Q5VU36 1347 aa8.2□□□□□ -1.1
SF3B1-209ENST00000479532 SPATA31A7Q8IWB4 1347 aa8.2□□□□□ -1.1
SF3B1-209ENST00000479532 RGPD2P0DJD1 1756 aa8.2□□□□□ -1.1
SF3B1-209ENST00000479532 WNK3Q9BYP7 1800 aa8.19□□□□□ -1.1
SF3B1-209ENST00000479532 EIF4A2Q14240 407 aaKnown RBP8.19□□□□□ -1.1
SF3B1-209ENST00000479532 AGERQ15109 404 aa8.19□□□□□ -1.1
SF3B1-209ENST00000479532 HDGFL1Q5TGJ6 251 aa8.19□□□□□ -1.1
SF3B1-209ENST00000479532 ADAMTS19Q8TE59 1207 aa8.19□□□□□ -1.1
SF3B1-209ENST00000479532 CDCA7Q9BWT1 371 aaPredicted RBP8.19□□□□□ -1.1
SF3B1-209ENST00000479532 PARP4Q9UKK3 1724 aaKnown RBP8.19□□□□□ -1.1
SF3B1-209ENST00000479532 SPATA31A1Q5TZJ5 1347 aa8.19□□□□□ -1.1
SF3B1-209ENST00000479532 U2SURPO15042 1029 aaKnown RBP8.18□□□□□ -1.1
SF3B1-209ENST00000479532 NEFMP07197 916 aa8.18□□□□□ -1.1
SF3B1-209ENST00000479532 CTHP32929 405 aa8.18□□□□□ -1.1
SF3B1-209ENST00000479532 WDR43Q15061 677 aaKnown RBP eCLIP8.18□□□□□ -1.1
SF3B1-209ENST00000479532 PODNQ7Z5L7 613 aa8.18□□□□□ -1.1
SF3B1-209ENST00000479532 KRTAP1-3Q8IUG1 177 aa8.18□□□□□ -1.1
SF3B1-209ENST00000479532 RAPGEF4Q8WZA2 1011 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms