RNA–Protein interactions for RNA: ENST00000479300.1

VCP-205, Transcript of valosin containing protein, humanhuman

TSL 1 (best)

Gene VCP, Length 559 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-205ENST00000479300 SLC10A3P09131 477 aa8.7□□□□□ -1.02
VCP-205ENST00000479300 COPS6Q7L5N1 327 aa8.7□□□□□ -1.02
VCP-205ENST00000479300 XAGE3Q8WTP9 111 aa8.7□□□□□ -1.02
VCP-205ENST00000479300 CELF1Q92879 486 aaKnown RBP8.7□□□□□ -1.02
VCP-205ENST00000479300 CSRNP1Q96S65 589 aa8.7□□□□□ -1.02
VCP-205ENST00000479300 POLLQ9UGP5 575 aa8.7□□□□□ -1.02
VCP-205ENST00000479300 H7C1D1 291 aa8.69□□□□□ -1.02
VCP-205ENST00000479300 RIMBP2O15034 1052 aa8.69□□□□□ -1.02
VCP-205ENST00000479300 PRKCSHP14314 528 aaPredicted RBP8.69□□□□□ -1.02
VCP-205ENST00000479300 EIF2S2P20042 333 aaKnown RBP8.69□□□□□ -1.02
VCP-205ENST00000479300 DSG3P32926 999 aa8.69□□□□□ -1.02
VCP-205ENST00000479300 GPSM2P81274 684 aa8.69□□□□□ -1.02
VCP-205ENST00000479300 DDX10Q13206 875 aaKnown RBP8.69□□□□□ -1.02
VCP-205ENST00000479300 TCIRG1Q13488 830 aa8.69□□□□□ -1.02
VCP-205ENST00000479300 DOK7Q18PE1 504 aa8.69□□□□□ -1.02
VCP-205ENST00000479300 KRT24Q2M2I5 525 aa8.69□□□□□ -1.02
VCP-205ENST00000479300 DDX46Q7L014 1031 aaKnown RBP8.69□□□□□ -1.02
VCP-205ENST00000479300 NECTIN2Q92692 538 aa8.69□□□□□ -1.02
VCP-205ENST00000479300 HTTP42858 3142 aa8.68□□□□□ -1.02
VCP-205ENST00000479300 ECE2O60344 883 aa8.68□□□□□ -1.02
VCP-205ENST00000479300 ZNF157P51786 506 aaPredicted RBP8.68□□□□□ -1.02
VCP-205ENST00000479300 LMOD3Q0VAK6 560 aa8.68□□□□□ -1.02
VCP-205ENST00000479300 AIMP1Q12904 312 aaKnown RBP8.68□□□□□ -1.02
VCP-205ENST00000479300 WDR43Q15061 677 aaKnown RBP eCLIP8.68□□□□□ -1.02
VCP-205ENST00000479300 WASHC4Q2M389 1173 aa8.68□□□□□ -1.02
VCP-205ENST00000479300 RBM26Q5T8P6 1007 aaKnown RBP8.68□□□□□ -1.02
VCP-205ENST00000479300 RASAL3Q86YV0 1011 aa8.68□□□□□ -1.02
VCP-205ENST00000479300 GGA3Q9NZ52 723 aa8.68□□□□□ -1.02
VCP-205ENST00000479300 TRMT112Q9UI30 125 aaKnown RBP8.68□□□□□ -1.02
VCP-205ENST00000479300 TSPYL4Q9UJ04 414 aa8.68□□□□□ -1.02
VCP-205ENST00000479300 SH3TC1Q8TE82 1336 aa8.68□□□□□ -1.02
VCP-205ENST00000479300 AKAP11Q9UKA4 1901 aa8.68□□□□□ -1.02
VCP-205ENST00000479300 KIF4BQ2VIQ3 1234 aa8.67□□□□□ -1.02
VCP-205ENST00000479300 PRPF38BQ5VTL8 546 aaKnown RBP8.67□□□□□ -1.02
VCP-205ENST00000479300 MOB2Q70IA6 237 aa8.67□□□□□ -1.02
VCP-205ENST00000479300 CTU1Q7Z7A3 348 aaKnown RBP8.67□□□□□ -1.02
VCP-205ENST00000479300 C2orf69Q8N8R5 385 aa8.67□□□□□ -1.02
VCP-205ENST00000479300 CCDC102AQ96A19 550 aa8.67□□□□□ -1.02
VCP-205ENST00000479300 CDCA5Q96FF9 252 aa8.67□□□□□ -1.02
VCP-205ENST00000479300 FAM89AQ96GI7 184 aa8.67□□□□□ -1.02
VCP-205ENST00000479300 TMX4Q9H1E5 349 aaPredicted RBP8.67□□□□□ -1.02
VCP-205ENST00000479300 NSFL1CQ9UNZ2 370 aaKnown RBP8.67□□□□□ -1.02
VCP-205ENST00000479300 SCAF8Q9UPN6 1271 aaKnown RBP8.67□□□□□ -1.02
VCP-205ENST00000479300 HPS5Q9UPZ3 1129 aa8.67□□□□□ -1.02
VCP-205ENST00000479300 ZNF646O15015 1829 aaPredicted RBP8.66□□□□□ -1.02
VCP-205ENST00000479300 PSME4Q14997 1843 aa8.66□□□□□ -1.02
VCP-205ENST00000479300 ZNF609O15014 1411 aa8.66□□□□□ -1.02
VCP-205ENST00000479300 MYBBP1AQ9BQG0 1328 aaKnown RBP8.66□□□□□ -1.02
VCP-205ENST00000479300 VIL1P09327 827 aaKnown RBP8.66□□□□□ -1.02
VCP-205ENST00000479300 RPS12P25398 132 aaKnown RBP8.66□□□□□ -1.02
VCP-205ENST00000479300 ZNF280AP59817 542 aaPredicted RBP8.66□□□□□ -1.02
VCP-205ENST00000479300 SF3B3Q15393 1217 aaKnown RBP8.66□□□□□ -1.02
VCP-205ENST00000479300 TMC4Q7Z404 712 aa8.66□□□□□ -1.02
VCP-205ENST00000479300 TBC1D16Q8TBP0 767 aa8.66□□□□□ -1.02
VCP-205ENST00000479300 DCPSQ96C86 337 aaKnown RBP8.66□□□□□ -1.02
VCP-205ENST00000479300 GMLQ99445 158 aa8.66□□□□□ -1.02
VCP-205ENST00000479300 ISCA1Q9BUE6 129 aa8.66□□□□□ -1.02
VCP-205ENST00000479300 PAPPA2Q9BXP8 1791 aa8.66□□□□□ -1.02
VCP-205ENST00000479300 WTIPA6NIX2 430 aaPredicted RBP8.65□□□□□ -1.02
VCP-205ENST00000479300 ATP5J2-PTCD1G3V325 749 aa8.65□□□□□ -1.02
VCP-205ENST00000479300 C6orf229H3BNL8 230 aa8.65□□□□□ -1.02
VCP-205ENST00000479300 RIPK4P57078 832 aa8.65□□□□□ -1.02
VCP-205ENST00000479300 HSP90AB3PQ58FF7 597 aa8.65□□□□□ -1.02
VCP-205ENST00000479300 ANGEL2Q5VTE6 544 aaKnown RBP8.65□□□□□ -1.02
VCP-205ENST00000479300 R3HDMLQ9H3Y0 253 aa8.65□□□□□ -1.02
VCP-205ENST00000479300 SEC31BQ9NQW1 1179 aa8.65□□□□□ -1.02
VCP-205ENST00000479300 CHPF2Q9P2E5 772 aa8.65□□□□□ -1.02
VCP-205ENST00000479300 MKI67P46013 3256 aaKnown RBP8.64□□□□□ -1.03
VCP-205ENST00000479300 TBC1D8O95759 1140 aa8.64□□□□□ -1.03
VCP-205ENST00000479300 SCARF1Q14162 830 aa8.64□□□□□ -1.03
VCP-205ENST00000479300 RTL5Q5HYW3 569 aaPredicted RBP8.64□□□□□ -1.03
VCP-205ENST00000479300 PRAMEF18Q5VWM3 479 aa8.64□□□□□ -1.03
VCP-205ENST00000479300 SULF1Q8IWU6 871 aa8.64□□□□□ -1.03
VCP-205ENST00000479300 ZNF296Q8WUU4 475 aaPredicted RBP8.64□□□□□ -1.03
VCP-205ENST00000479300 TSHZ2Q9NRE2 1034 aa8.64□□□□□ -1.03
VCP-205ENST00000479300 UBE2Q2LH0YL09 131 aa8.63□□□□□ -1.03
VCP-205ENST00000479300 CHL1O00533 1208 aa8.63□□□□□ -1.03
VCP-205ENST00000479300 TMPOP42166 694 aaKnown RBP8.63□□□□□ -1.03
VCP-205ENST00000479300 RPS8P62241 208 aaKnown RBP8.63□□□□□ -1.03
VCP-205ENST00000479300 NEUROD2Q15784 382 aa8.63□□□□□ -1.03
VCP-205ENST00000479300 PLBD2Q8NHP8 589 aa8.63□□□□□ -1.03
VCP-205ENST00000479300 BABAM1Q9NWV8 329 aa8.63□□□□□ -1.03
VCP-205ENST00000479300 PODXL2Q9NZ53 605 aa8.63□□□□□ -1.03
VCP-205ENST00000479300 IRS4O14654 1257 aaPredicted RBP8.62□□□□□ -1.03
VCP-205ENST00000479300 UFL1O94874 794 aa8.62□□□□□ -1.03
VCP-205ENST00000479300 RSBN1LQ6PCB5 846 aaPredicted RBP8.62□□□□□ -1.03
VCP-205ENST00000479300 RUNDC1Q96C34 613 aa8.62□□□□□ -1.03
VCP-205ENST00000479300 EYA3Q99504 573 aa8.62□□□□□ -1.03
VCP-205ENST00000479300 MXD3Q9BW11 206 aa8.62□□□□□ -1.03
VCP-205ENST00000479300 LAS1LQ9Y4W2 734 aaKnown RBP8.62□□□□□ -1.03
VCP-205ENST00000479300 SUPT16HQ9Y5B9 1047 aaKnown RBP8.62□□□□□ -1.03
VCP-205ENST00000479300 GPR25O00155 361 aa8.61□□□□□ -1.03
VCP-205ENST00000479300 TM4SF4P48230 202 aa8.61□□□□□ -1.03
VCP-205ENST00000479300 FKBP1BP68106 108 aa8.61□□□□□ -1.03
VCP-205ENST00000479300 TRIM28Q13263 835 aaKnown RBP8.61□□□□□ -1.03
VCP-205ENST00000479300 NBPF9Q3BBW0 867 aa8.61□□□□□ -1.03
VCP-205ENST00000479300 ANKRD13DQ6ZTN6 518 aa8.61□□□□□ -1.03
VCP-205ENST00000479300 CCDC146Q8IYE0 955 aa8.61□□□□□ -1.03
VCP-205ENST00000479300 AGBL3Q8NEM8 1001 aa8.61□□□□□ -1.03
VCP-205ENST00000479300 JARID2Q92833 1246 aaPredicted RBP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms