RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 SLFN5Q08AF3 891 aa8.67□□□□□ -1.02
USP48-208ENST00000479177 AMOTQ4VCS5 1084 aa8.67□□□□□ -1.02
USP48-208ENST00000479177 PLEKHO1Q53GL0 409 aaPredicted RBP8.67□□□□□ -1.02
USP48-208ENST00000479177 ZNF530Q6P9A1 599 aaPredicted RBP8.67□□□□□ -1.02
USP48-208ENST00000479177 BCL9LQ86UU0 1499 aa8.67□□□□□ -1.02
USP48-208ENST00000479177 TRMT2AQ8IZ69 625 aaKnown RBP8.67□□□□□ -1.02
USP48-208ENST00000479177 SCN11AQ9UI33 1791 aa8.66□□□□□ -1.02
USP48-208ENST00000479177 HTATSF1O43719 755 aaKnown RBP8.66□□□□□ -1.02
USP48-208ENST00000479177 DUSP27Q5VZP5 1158 aa8.66□□□□□ -1.02
USP48-208ENST00000479177 NPAS3Q8IXF0 933 aa8.66□□□□□ -1.02
USP48-208ENST00000479177 ZNF511Q8NB15 262 aa8.66□□□□□ -1.02
USP48-208ENST00000479177 FOXJ1Q92949 421 aa8.66□□□□□ -1.02
USP48-208ENST00000479177 C8orf37Q96NL8 207 aa8.66□□□□□ -1.02
USP48-208ENST00000479177 THUMPD2Q9BTF0 503 aaKnown RBP8.66□□□□□ -1.02
USP48-208ENST00000479177 SIPA1L3O60292 1781 aaPredicted RBP8.66□□□□□ -1.02
USP48-208ENST00000479177 MRC1P22897 1456 aa8.65□□□□□ -1.02
USP48-208ENST00000479177 KDM6AO15550 1401 aaPredicted RBP8.65□□□□□ -1.02
USP48-208ENST00000479177 TNS2Q63HR2 1409 aa8.65□□□□□ -1.02
USP48-208ENST00000479177 CEMIPQ8WUJ3 1361 aa8.65□□□□□ -1.02
USP48-208ENST00000479177 SPATA31A1Q5TZJ5 1347 aa8.65□□□□□ -1.02
USP48-208ENST00000479177 SPATA31A5Q5VU36 1347 aa8.65□□□□□ -1.02
USP48-208ENST00000479177 SPATA31A7Q8IWB4 1347 aa8.65□□□□□ -1.02
USP48-208ENST00000479177 FANCIQ9NVI1 1328 aa8.65□□□□□ -1.02
USP48-208ENST00000479177 GNAT3A8MTJ3 354 aa8.65□□□□□ -1.02
USP48-208ENST00000479177 IL2RBP14784 551 aa8.65□□□□□ -1.02
USP48-208ENST00000479177 CALD1Q05682 793 aaKnown RBP8.65□□□□□ -1.02
USP48-208ENST00000479177 DCTN1Q14203 1278 aa8.65□□□□□ -1.02
USP48-208ENST00000479177 MCM10Q7L590 875 aa8.65□□□□□ -1.02
USP48-208ENST00000479177 UNC5CLQ8IV45 518 aa8.65□□□□□ -1.02
USP48-208ENST00000479177 FNBP4Q8N3X1 1017 aaPredicted RBP8.65□□□□□ -1.02
USP48-208ENST00000479177 THSD7AQ9UPZ6 1657 aa8.65□□□□□ -1.03
USP48-208ENST00000479177 KDM3BQ7LBC6 1761 aa8.64□□□□□ -1.03
USP48-208ENST00000479177 ZNF853P0CG23 659 aa8.64□□□□□ -1.03
USP48-208ENST00000479177 SUZ12Q15022 739 aaKnown RBP8.64□□□□□ -1.03
USP48-208ENST00000479177 TMEM259Q4ZIN3 620 aa8.64□□□□□ -1.03
USP48-208ENST00000479177 C4orf48Q5BLP8 95 aa8.64□□□□□ -1.03
USP48-208ENST00000479177 AKAP4Q5JQC9 854 aa8.64□□□□□ -1.03
USP48-208ENST00000479177 NGLY1Q96IV0 654 aa8.64□□□□□ -1.03
USP48-208ENST00000479177 ZFP42Q96MM3 310 aa8.64□□□□□ -1.03
USP48-208ENST00000479177 TRIM34Q9BYJ4 488 aa8.64□□□□□ -1.03
USP48-208ENST00000479177 MYH16Q9H6N6 1097 aa8.64□□□□□ -1.03
USP48-208ENST00000479177 SNRKQ9NRH2 765 aa8.64□□□□□ -1.03
USP48-208ENST00000479177 IFT57Q9NWB7 429 aa8.64□□□□□ -1.03
USP48-208ENST00000479177 SPG7Q9UQ90 795 aa8.64□□□□□ -1.03
USP48-208ENST00000479177 GLI3P10071 1580 aa8.64□□□□□ -1.03
USP48-208ENST00000479177 ATRNO75882 1429 aa8.63□□□□□ -1.03
USP48-208ENST00000479177 TOGARAM1Q9Y4F4 1720 aa8.63□□□□□ -1.03
USP48-208ENST00000479177 AFF2P51816 1311 aa8.63□□□□□ -1.03
USP48-208ENST00000479177 PCDH11XQ9BZA7 1347 aa8.63□□□□□ -1.03
USP48-208ENST00000479177 PCDH11YQ9BZA8 1340 aa8.63□□□□□ -1.03
USP48-208ENST00000479177 PHKG2P15735 406 aa8.63□□□□□ -1.03
USP48-208ENST00000479177 VPS72Q15906 364 aa8.63□□□□□ -1.03
USP48-208ENST00000479177 C1orf141Q5JVX7 400 aa8.63□□□□□ -1.03
USP48-208ENST00000479177 MEX3CQ5U5Q3 659 aaKnown RBP8.63□□□□□ -1.03
USP48-208ENST00000479177 EHBP1Q8NDI1 1231 aa8.63□□□□□ -1.03
USP48-208ENST00000479177 RTF1Q92541 710 aaKnown RBP8.63□□□□□ -1.03
USP48-208ENST00000479177 TSR2Q969E8 191 aaKnown RBP8.63□□□□□ -1.03
USP48-208ENST00000479177 USP35Q9P2H5 1018 aa8.63□□□□□ -1.03
USP48-208ENST00000479177 WASF2Q9Y6W5 498 aa8.63□□□□□ -1.03
USP48-208ENST00000479177 CYP27B1O15528 508 aa8.62□□□□□ -1.03
USP48-208ENST00000479177 RNMTO43148 476 aaKnown RBP8.62□□□□□ -1.03
USP48-208ENST00000479177 GNAI1P63096 354 aa8.62□□□□□ -1.03
USP48-208ENST00000479177 IL17REQ8NFR9 667 aa8.62□□□□□ -1.03
USP48-208ENST00000479177 ZCRB1Q8TBF4 217 aaKnown RBP8.62□□□□□ -1.03
USP48-208ENST00000479177 THRAP3Q9Y2W1 955 aaKnown RBP8.62□□□□□ -1.03
USP48-208ENST00000479177 SOBPA7XYQ1 873 aa8.61□□□□□ -1.03
USP48-208ENST00000479177 CHL1O00533 1208 aa8.61□□□□□ -1.03
USP48-208ENST00000479177 IFNL2Q8IZJ0 200 aa8.61□□□□□ -1.03
USP48-208ENST00000479177 MTMR14Q8NCE2 650 aa8.61□□□□□ -1.03
USP48-208ENST00000479177 GJD4Q96KN9 370 aaPredicted RBP8.61□□□□□ -1.03
USP48-208ENST00000479177 CDCA7Q9BWT1 371 aaPredicted RBP8.61□□□□□ -1.03
USP48-208ENST00000479177 LGR6Q9HBX8 967 aa8.61□□□□□ -1.03
USP48-208ENST00000479177 MBIPQ9NS73 344 aa8.61□□□□□ -1.03
USP48-208ENST00000479177 USP21Q9UK80 565 aa8.61□□□□□ -1.03
USP48-208ENST00000479177 PAPPAQ13219 1627 aa8.61□□□□□ -1.03
USP48-208ENST00000479177 HSP90AB1P08238 724 aaKnown RBP8.6□□□□□ -1.03
USP48-208ENST00000479177 MPRIPQ6WCQ1 1025 aa8.6□□□□□ -1.03
USP48-208ENST00000479177 FKBPLQ9UIM3 349 aa8.6□□□□□ -1.03
USP48-208ENST00000479177 RCAN3Q9UKA8 241 aa8.6□□□□□ -1.03
USP48-208ENST00000479177 TLL2Q9Y6L7 1015 aa8.6□□□□□ -1.03
USP48-208ENST00000479177 DOT1LQ8TEK3 1739 aa8.6□□□□□ -1.03
USP48-208ENST00000479177 RNF123Q5XPI4 1314 aa8.59□□□□□ -1.03
USP48-208ENST00000479177 EXOSC9Q06265 439 aaKnown RBP8.59□□□□□ -1.03
USP48-208ENST00000479177 DCAF5Q96JK2 942 aa8.59□□□□□ -1.03
USP48-208ENST00000479177 OCSTAMPQ9BR26 566 aa8.59□□□□□ -1.03
USP48-208ENST00000479177 BABAM1Q9NWV8 329 aa8.59□□□□□ -1.03
USP48-208ENST00000479177 CCDC9Q9Y3X0 531 aaKnown RBP8.59□□□□□ -1.03
USP48-208ENST00000479177 LAS1LQ9Y4W2 734 aaKnown RBP8.59□□□□□ -1.03
USP48-208ENST00000479177 UBR2Q8IWV8 1755 aa8.58□□□□□ -1.04
USP48-208ENST00000479177 CT47B1P0C2W7 299 aaPredicted RBP8.58□□□□□ -1.04
USP48-208ENST00000479177 GSK3AP49840 483 aa8.58□□□□□ -1.04
USP48-208ENST00000479177 TEFQ10587 303 aa8.58□□□□□ -1.04
USP48-208ENST00000479177 AGERQ15109 404 aa8.58□□□□□ -1.04
USP48-208ENST00000479177 SH3BP5LQ7L8J4 393 aa8.58□□□□□ -1.04
USP48-208ENST00000479177 SLC52A2Q9HAB3 445 aa8.58□□□□□ -1.04
USP48-208ENST00000479177 TSPYL4Q9UJ04 414 aa8.58□□□□□ -1.04
USP48-208ENST00000479177 ITGB4P16144 1822 aa8.58□□□□□ -1.04
USP48-208ENST00000479177 GPR37L1O60883 481 aa8.57□□□□□ -1.04
USP48-208ENST00000479177 TAF7Q15545 349 aaPredicted RBP8.57□□□□□ -1.04
USP48-208ENST00000479177 DDB1Q16531 1140 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms