RNA–Protein interactions for RNA: ENST00000474546.1

CCDC93-208, Transcript of coiled-coil domain containing 93, humanhuman

TSL 3

Gene CCDC93, Length 452 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC93-208ENST00000474546 GPS2Q13227 327 aa9.43□□□□□ -0.9
CCDC93-208ENST00000474546 MTX1Q13505 466 aa9.43□□□□□ -0.9
CCDC93-208ENST00000474546 EIF4A2Q14240 407 aaKnown RBP9.43□□□□□ -0.9
CCDC93-208ENST00000474546 PTPN14Q15678 1187 aa9.43□□□□□ -0.9
CCDC93-208ENST00000474546 ZRSR1Q15695 479 aaKnown RBP9.43□□□□□ -0.9
CCDC93-208ENST00000474546 STX1AQ16623 288 aa9.43□□□□□ -0.9
CCDC93-208ENST00000474546 TPD52L1Q16890 204 aaPredicted RBP9.43□□□□□ -0.9
CCDC93-208ENST00000474546 TSGA10IPQ3SY00 556 aa9.43□□□□□ -0.9
CCDC93-208ENST00000474546 CEP135Q66GS9 1140 aa9.43□□□□□ -0.9
CCDC93-208ENST00000474546 SLC4A10Q6U841 1118 aa9.43□□□□□ -0.9
CCDC93-208ENST00000474546 RUFY3Q7L099 469 aa9.43□□□□□ -0.9
CCDC93-208ENST00000474546 CCDC150Q8NCX0 1101 aa9.43□□□□□ -0.9
CCDC93-208ENST00000474546 OTUD7AQ8TE49 926 aaPredicted RBP9.43□□□□□ -0.9
CCDC93-208ENST00000474546 SPATA32Q96LK8 384 aa9.43□□□□□ -0.9
CCDC93-208ENST00000474546 LLPHQ9BRT6 129 aaKnown RBP9.43□□□□□ -0.9
CCDC93-208ENST00000474546 LSG1Q9H089 658 aaKnown RBP9.43□□□□□ -0.9
CCDC93-208ENST00000474546 HYPKQ9NX55 129 aa9.43□□□□□ -0.9
CCDC93-208ENST00000474546 CTNNA3Q9UI47 895 aa9.43□□□□□ -0.9
CCDC93-208ENST00000474546 MTMR6Q9Y217 621 aa9.43□□□□□ -0.9
CCDC93-208ENST00000474546 USP54Q70EL1 1684 aa9.42□□□□□ -0.9
CCDC93-208ENST00000474546 GOLGA6L9A6NEM1 432 aa9.42□□□□□ -0.9
CCDC93-208ENST00000474546 GADD45BO75293 160 aaPredicted RBP9.42□□□□□ -0.9
CCDC93-208ENST00000474546 CASTP20810 708 aaKnown RBP9.42□□□□□ -0.9
CCDC93-208ENST00000474546 MNX1P50219 401 aaPredicted RBP9.42□□□□□ -0.9
CCDC93-208ENST00000474546 FXR1P51114 621 aaKnown RBP eCLIP9.42□□□□□ -0.9
CCDC93-208ENST00000474546 PLCB2Q00722 1185 aa9.42□□□□□ -0.9
CCDC93-208ENST00000474546 MAP2K1Q02750 393 aaPredicted RBP9.42□□□□□ -0.9
CCDC93-208ENST00000474546 ZNF827Q17R98 1081 aa9.42□□□□□ -0.9
CCDC93-208ENST00000474546 LARP1BQ659C4 914 aaKnown RBP9.42□□□□□ -0.9
CCDC93-208ENST00000474546 ZSCAN25Q6NSZ9 544 aa9.42□□□□□ -0.9
CCDC93-208ENST00000474546 WAPLQ7Z5K2 1190 aa9.42□□□□□ -0.9
CCDC93-208ENST00000474546 NBPF15Q8N660 670 aa9.42□□□□□ -0.9
CCDC93-208ENST00000474546 RHPN1Q8TCX5 695 aa9.42□□□□□ -0.9
CCDC93-208ENST00000474546 TIGD1Q96MW7 591 aa9.42□□□□□ -0.9
CCDC93-208ENST00000474546 DNAJC2Q99543 621 aaKnown RBP9.42□□□□□ -0.9
CCDC93-208ENST00000474546 ANO10Q9NW15 660 aa9.42□□□□□ -0.9
CCDC93-208ENST00000474546 CLIP2Q9UDT6 1046 aa9.42□□□□□ -0.9
CCDC93-208ENST00000474546 IGSF1Q8N6C5 1336 aa9.41□□□□□ -0.9
CCDC93-208ENST00000474546 APBB1O00213 710 aa9.41□□□□□ -0.9
CCDC93-208ENST00000474546 ALDH1L1O75891 902 aa9.41□□□□□ -0.9
CCDC93-208ENST00000474546 SLU7O95391 586 aaKnown RBP9.41□□□□□ -0.9
CCDC93-208ENST00000474546 ZNF165P49910 485 aa9.41□□□□□ -0.9
CCDC93-208ENST00000474546 NCBP1Q09161 790 aaKnown RBP9.41□□□□□ -0.9
CCDC93-208ENST00000474546 FILIP1Q7Z7B0 1213 aa9.41□□□□□ -0.9
CCDC93-208ENST00000474546 NME9Q86XW9 330 aa9.41□□□□□ -0.9
CCDC93-208ENST00000474546 CEP57L1Q8IYX8 460 aa9.41□□□□□ -0.9
CCDC93-208ENST00000474546 ZNF396Q96N95 335 aaPredicted RBP9.41□□□□□ -0.9
CCDC93-208ENST00000474546 UPF3BQ9BZI7 483 aaKnown RBP9.41□□□□□ -0.9
CCDC93-208ENST00000474546 ECHDC1Q9NTX5 307 aa9.41□□□□□ -0.9
CCDC93-208ENST00000474546 PALD1Q9ULE6 856 aa9.41□□□□□ -0.9
CCDC93-208ENST00000474546 EXOC6BQ9Y2D4 811 aa9.41□□□□□ -0.9
CCDC93-208ENST00000474546 PHRF1Q9P1Y6 1649 aaKnown RBP9.41□□□□□ -0.9
CCDC93-208ENST00000474546 KCPQ6ZWJ8 1503 aa9.41□□□□□ -0.9
CCDC93-208ENST00000474546 USP6P35125 1406 aa9.4□□□□□ -0.9
CCDC93-208ENST00000474546 PNPLA7Q6ZV29 1317 aa9.4□□□□□ -0.9
CCDC93-208ENST00000474546 ADAMTS7Q9UKP4 1686 aa9.4□□□□□ -0.9
CCDC93-208ENST00000474546 GNAT3A8MTJ3 354 aa9.4□□□□□ -0.9
CCDC93-208ENST00000474546 BECN2A8MW95 431 aa9.4□□□□□ -0.9
CCDC93-208ENST00000474546 SURF6O75683 361 aaKnown RBP9.4□□□□□ -0.9
CCDC93-208ENST00000474546 KCNJ4P48050 445 aa9.4□□□□□ -0.9
CCDC93-208ENST00000474546 FOXD4L5Q5VV16 416 aaPredicted RBP9.4□□□□□ -0.9
CCDC93-208ENST00000474546 JAKMIP3Q5VZ66 844 aa9.4□□□□□ -0.9
CCDC93-208ENST00000474546 GIMAP6Q6P9H5 292 aa9.4□□□□□ -0.9
CCDC93-208ENST00000474546 CCDC73Q6ZRK6 1079 aa9.4□□□□□ -0.9
CCDC93-208ENST00000474546 FCHSD1Q86WN1 690 aa9.4□□□□□ -0.9
CCDC93-208ENST00000474546 PI4K2BQ8TCG2 481 aa9.4□□□□□ -0.9
CCDC93-208ENST00000474546 FOXD4L4Q8WXT5 416 aaPredicted RBP9.4□□□□□ -0.9
CCDC93-208ENST00000474546 AKT1S1Q96B36 256 aa9.4□□□□□ -0.9
CCDC93-208ENST00000474546 BPIFA3Q9BQP9 254 aa9.4□□□□□ -0.9
CCDC93-208ENST00000474546 NOL10Q9BSC4 688 aaKnown RBP9.4□□□□□ -0.9
CCDC93-208ENST00000474546 MCOLN1Q9GZU1 580 aa9.4□□□□□ -0.9
CCDC93-208ENST00000474546 CWC15Q9P013 229 aaKnown RBP9.4□□□□□ -0.9
CCDC93-208ENST00000474546 MRVI1Q9Y6F6 885 aa9.4□□□□□ -0.9
CCDC93-208ENST00000474546 NCAPD2Q15021 1401 aa9.39□□□□□ -0.91
CCDC93-208ENST00000474546 NUTM2FA1L443 756 aa9.39□□□□□ -0.91
CCDC93-208ENST00000474546 VPS37CA5D8V6 355 aaPredicted RBP9.39□□□□□ -0.91
CCDC93-208ENST00000474546 TUBBP07437 444 aa9.39□□□□□ -0.91
CCDC93-208ENST00000474546 IFIT2P09913 472 aaKnown RBP9.39□□□□□ -0.91
CCDC93-208ENST00000474546 DNM1Q05193 864 aaKnown RBP9.39□□□□□ -0.91
CCDC93-208ENST00000474546 TAF7Q15545 349 aaPredicted RBP9.39□□□□□ -0.91
CCDC93-208ENST00000474546 NAA16Q6N069 864 aaPredicted RBP9.39□□□□□ -0.91
CCDC93-208ENST00000474546 CTR9Q6PD62 1173 aa9.39□□□□□ -0.91
CCDC93-208ENST00000474546 BLOC1S2Q6QNY1 142 aa9.39□□□□□ -0.91
CCDC93-208ENST00000474546 CCDC186Q7Z3E2 898 aa9.39□□□□□ -0.91
CCDC93-208ENST00000474546 TXLNBQ8N3L3 684 aa9.39□□□□□ -0.91
CCDC93-208ENST00000474546 JAKMIP1Q96N16 626 aaKnown RBP9.39□□□□□ -0.91
CCDC93-208ENST00000474546 KCNF1Q9H3M0 494 aa9.39□□□□□ -0.91
CCDC93-208ENST00000474546 CBX8Q9HC52 389 aa9.39□□□□□ -0.91
CCDC93-208ENST00000474546 PKD1L3Q7Z443 1732 aa9.39□□□□□ -0.91
CCDC93-208ENST00000474546 TCHHQ07283 1943 aa9.39□□□□□ -0.91
CCDC93-208ENST00000474546 SZT2Q5T011 3432 aa9.38□□□□□ -0.91
CCDC93-208ENST00000474546 KINO60870 393 aaKnown RBP9.38□□□□□ -0.91
CCDC93-208ENST00000474546 TUBB2AQ13885 445 aa9.38□□□□□ -0.91
CCDC93-208ENST00000474546 TERF2Q15554 542 aa9.38□□□□□ -0.91
CCDC93-208ENST00000474546 DDB1Q16531 1140 aa9.38□□□□□ -0.91
CCDC93-208ENST00000474546 ATP2B3Q16720 1220 aa9.38□□□□□ -0.91
CCDC93-208ENST00000474546 LRRC8AQ8IWT6 810 aa9.38□□□□□ -0.91
CCDC93-208ENST00000474546 BICD2Q8TD16 824 aa9.38□□□□□ -0.91
CCDC93-208ENST00000474546 DDX11Q96FC9 970 aa9.38□□□□□ -0.91
CCDC93-208ENST00000474546 TUBB2BQ9BVA1 445 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms