RNA–Protein interactions for RNA: ENST00000474412.1

VPS50-211, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-211ENST00000474412 F11P03951 625 aa10.24□□□□□ -0.77
VPS50-211ENST00000474412 LARP1Q6PKG0 1096 aaKnown RBP10.24□□□□□ -0.77
VPS50-211ENST00000474412 TRIM22Q8IYM9 498 aa10.24□□□□□ -0.77
VPS50-211ENST00000474412 NIFKQ9BYG3 293 aaKnown RBP10.24□□□□□ -0.77
VPS50-211ENST00000474412 RGS17Q9UGC6 210 aaPredicted RBP10.24□□□□□ -0.77
VPS50-211ENST00000474412 TRPM1Q7Z4N2 1603 aa10.24□□□□□ -0.77
VPS50-211ENST00000474412 QRICH2Q9H0J4 1663 aa10.24□□□□□ -0.77
VPS50-211ENST00000474412 LRPPRCP42704 1394 aaKnown RBP10.24□□□□□ -0.77
VPS50-211ENST00000474412 JCADQ9P266 1359 aa10.24□□□□□ -0.77
VPS50-211ENST00000474412 PLCH1Q4KWH8 1693 aa10.23□□□□□ -0.77
VPS50-211ENST00000474412 ATF3P18847 181 aa10.23□□□□□ -0.77
VPS50-211ENST00000474412 INSM1Q01101 510 aaPredicted RBP10.23□□□□□ -0.77
VPS50-211ENST00000474412 MTFR1Q15390 333 aa10.23□□□□□ -0.77
VPS50-211ENST00000474412 TMEM132EQ6IEE7 984 aa10.23□□□□□ -0.77
VPS50-211ENST00000474412 GPR161Q8N6U8 529 aaKnown RBP10.23□□□□□ -0.77
VPS50-211ENST00000474412 ZNF837Q96EG3 531 aaPredicted RBP10.23□□□□□ -0.77
VPS50-211ENST00000474412 PXDNQ92626 1479 aa10.23□□□□□ -0.77
VPS50-211ENST00000474412 SIX5Q8N196 739 aa10.22□□□□□ -0.77
VPS50-211ENST00000474412 GMCL1Q96IK5 515 aa10.22□□□□□ -0.77
VPS50-211ENST00000474412 CABP1Q9NZU7 370 aa10.22□□□□□ -0.77
VPS50-211ENST00000474412 ALS2Q96Q42 1657 aa10.22□□□□□ -0.77
VPS50-211ENST00000474412 CDK2AP1O14519 115 aa10.21□□□□□ -0.77
VPS50-211ENST00000474412 FOXR1Q6PIV2 292 aa10.21□□□□□ -0.77
VPS50-211ENST00000474412 COL25A1Q9BXS0 654 aaPredicted RBP10.21□□□□□ -0.77
VPS50-211ENST00000474412 VRTNQ9H8Y1 702 aa10.21□□□□□ -0.77
VPS50-211ENST00000474412 STK26Q9P289 416 aa10.21□□□□□ -0.77
VPS50-211ENST00000474412 USP3Q9Y6I4 520 aa10.21□□□□□ -0.77
VPS50-211ENST00000474412 DHX57Q6P158 1386 aaKnown RBP10.21□□□□□ -0.78
VPS50-211ENST00000474412 CSB-PGBD3P0DP91 1061 aa10.2□□□□□ -0.78
VPS50-211ENST00000474412 RFX1P22670 979 aa10.2□□□□□ -0.78
VPS50-211ENST00000474412 DBN1Q16643 649 aa10.2□□□□□ -0.78
VPS50-211ENST00000474412 CFAP70Q5T0N1 1121 aa10.2□□□□□ -0.78
VPS50-211ENST00000474412 PNPLA6Q8IY17 1366 aa10.2□□□□□ -0.78
VPS50-211ENST00000474412 TNS4Q8IZW8 715 aa10.2□□□□□ -0.78
VPS50-211ENST00000474412 PGBD3Q8N328 593 aa10.2□□□□□ -0.78
VPS50-211ENST00000474412 AIDAQ96BJ3 306 aa10.2□□□□□ -0.78
VPS50-211ENST00000474412 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.2□□□□□ -0.78
VPS50-211ENST00000474412 NUCKS1Q9H1E3 243 aaKnown RBP10.2□□□□□ -0.78
VPS50-211ENST00000474412 SCHIP1Q9P0W5 487 aaPredicted RBP10.2□□□□□ -0.78
VPS50-211ENST00000474412 IQSEC3Q9UPP2 1182 aaPredicted RBP10.2□□□□□ -0.78
VPS50-211ENST00000474412 SFI1A8K8P3 1242 aa10.19□□□□□ -0.78
VPS50-211ENST00000474412 MSX1P28360 303 aa10.19□□□□□ -0.78
VPS50-211ENST00000474412 NBPF1Q3BBV0 1214 aa10.19□□□□□ -0.78
VPS50-211ENST00000474412 WAPLQ7Z5K2 1190 aa10.19□□□□□ -0.78
VPS50-211ENST00000474412 CNTNAP3BQ96NU0 1288 aa10.19□□□□□ -0.78
VPS50-211ENST00000474412 ORAI2Q96SN7 254 aa10.19□□□□□ -0.78
VPS50-211ENST00000474412 CNTNAP3Q9BZ76 1288 aa10.19□□□□□ -0.78
VPS50-211ENST00000474412 PHRF1Q9P1Y6 1649 aaKnown RBP10.18□□□□□ -0.78
VPS50-211ENST00000474412 ABCC11Q96J66 1382 aa10.18□□□□□ -0.78
VPS50-211ENST00000474412 USP17L15C9J2P7 530 aa10.18□□□□□ -0.78
VPS50-211ENST00000474412 USP17L10C9JJH3 530 aa10.18□□□□□ -0.78
VPS50-211ENST00000474412 USP17L13C9JLJ4 530 aa10.18□□□□□ -0.78
VPS50-211ENST00000474412 USP17L12C9JPN9 530 aa10.18□□□□□ -0.78
VPS50-211ENST00000474412 USP17L11C9JVI0 530 aa10.18□□□□□ -0.78
VPS50-211ENST00000474412 USP17L21D6R901 530 aa10.18□□□□□ -0.78
VPS50-211ENST00000474412 USP17L18D6R9N7 530 aa10.18□□□□□ -0.78
VPS50-211ENST00000474412 USP17L22D6RA61 530 aa10.18□□□□□ -0.78
VPS50-211ENST00000474412 USP17L17D6RBQ6 530 aa10.18□□□□□ -0.78
VPS50-211ENST00000474412 USP17L19D6RCP7 530 aa10.18□□□□□ -0.78
VPS50-211ENST00000474412 USP17L20D6RJB6 530 aa10.18□□□□□ -0.78
VPS50-211ENST00000474412 GPR25O00155 361 aa10.18□□□□□ -0.78
VPS50-211ENST00000474412 USP17L24Q0WX57 530 aa10.18□□□□□ -0.78
VPS50-211ENST00000474412 CRTC2Q53ET0 693 aaPredicted RBP10.18□□□□□ -0.78
VPS50-211ENST00000474412 SLC9A9Q8IVB4 645 aa10.18□□□□□ -0.78
VPS50-211ENST00000474412 GTPBP3Q969Y2 492 aaKnown RBP10.18□□□□□ -0.78
VPS50-211ENST00000474412 CCDC97Q96F63 343 aaPredicted RBP10.18□□□□□ -0.78
VPS50-211ENST00000474412 RUBCNLQ9H714 662 aa10.18□□□□□ -0.78
VPS50-211ENST00000474412 NRAPQ86VF7 1730 aa10.18□□□□□ -0.78
VPS50-211ENST00000474412 BRWD3Q6RI45 1802 aa10.17□□□□□ -0.78
VPS50-211ENST00000474412 FAM196BA6NMK8 535 aa10.17□□□□□ -0.78
VPS50-211ENST00000474412 M0R2N6 131 aa10.17□□□□□ -0.78
VPS50-211ENST00000474412 EPHA4P54764 986 aa10.17□□□□□ -0.78
VPS50-211ENST00000474412 SEC13P55735 322 aa10.17□□□□□ -0.78
VPS50-211ENST00000474412 TBCELQ5QJ74 424 aa10.17□□□□□ -0.78
VPS50-211ENST00000474412 POTEAQ6S8J7 498 aa10.17□□□□□ -0.78
VPS50-211ENST00000474412 TSEN2Q8NCE0 465 aaKnown RBP10.17□□□□□ -0.78
VPS50-211ENST00000474412 TRERF1Q96PN7 1200 aa10.17□□□□□ -0.78
VPS50-211ENST00000474412 PARP3Q9Y6F1 533 aa10.17□□□□□ -0.78
VPS50-211ENST00000474412 TULP4Q9NRJ4 1543 aa10.17□□□□□ -0.78
VPS50-211ENST00000474412 TATP17735 454 aaPredicted RBP10.16□□□□□ -0.78
VPS50-211ENST00000474412 FOXK2Q01167 660 aa10.16□□□□□ -0.78
VPS50-211ENST00000474412 KRT76Q01546 638 aa10.16□□□□□ -0.78
VPS50-211ENST00000474412 PTK7Q13308 1070 aa10.16□□□□□ -0.78
VPS50-211ENST00000474412 CDCA8Q53HL2 280 aa10.16□□□□□ -0.78
VPS50-211ENST00000474412 EFHC2Q5JST6 749 aa10.16□□□□□ -0.78
VPS50-211ENST00000474412 C14orf93Q9H972 538 aaKnown RBP10.16□□□□□ -0.78
VPS50-211ENST00000474412 CHMP3Q9Y3E7 222 aa10.16□□□□□ -0.78
VPS50-211ENST00000474412 SPATA31A6Q5VVP1 1343 aa10.15□□□□□ -0.78
VPS50-211ENST00000474412 DPYDQ12882 1025 aa10.15□□□□□ -0.78
VPS50-211ENST00000474412 SAFB2Q14151 953 aaKnown RBP eCLIP10.15□□□□□ -0.78
VPS50-211ENST00000474412 RNFT1Q5M7Z0 435 aa10.15□□□□□ -0.78
VPS50-211ENST00000474412 ANKMY2Q8IV38 441 aa10.15□□□□□ -0.78
VPS50-211ENST00000474412 ZNF295-AS1Q8N0V1 137 aa10.15□□□□□ -0.78
VPS50-211ENST00000474412 TSPAN10Q9H1Z9 355 aaPredicted RBP10.15□□□□□ -0.78
VPS50-211ENST00000474412 ZNF232Q9UNY5 417 aa10.15□□□□□ -0.78
VPS50-211ENST00000474412 ACIN1Q9UKV3 1341 aaKnown RBP10.14□□□□□ -0.79
VPS50-211ENST00000474412 NWD2Q9ULI1 1742 aa10.14□□□□□ -0.79
VPS50-211ENST00000474412 DKK1O94907 266 aa10.14□□□□□ -0.79
VPS50-211ENST00000474412 XPCQ01831 940 aaPredicted RBP10.14□□□□□ -0.79
VPS50-211ENST00000474412 LBRQ14739 615 aaKnown RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms