RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 CHD1LQ86WJ1 897 aa10.18□□□□□ -0.78
COL6A3-210ENST00000473258 SELENOOQ9BVL4 669 aa10.18□□□□□ -0.78
COL6A3-210ENST00000473258 CAPS2Q9BXY5 557 aa10.18□□□□□ -0.78
COL6A3-210ENST00000473258 PLCB1Q9NQ66 1216 aa10.18□□□□□ -0.78
COL6A3-210ENST00000473258 CCDC62Q6P9F0 684 aa10.18□□□□□ -0.78
COL6A3-210ENST00000473258 CCDC144CPQ8IYA2 1237 aa10.18□□□□□ -0.78
COL6A3-210ENST00000473258 FSD1Q9BTV5 496 aa10.18□□□□□ -0.78
COL6A3-210ENST00000473258 ZNF569Q5MCW4 686 aa10.18□□□□□ -0.78
COL6A3-210ENST00000473258 OSBPL9Q96SU4 736 aa10.18□□□□□ -0.78
COL6A3-210ENST00000473258 SH2D4AQ9H788 454 aa10.18□□□□□ -0.78
COL6A3-210ENST00000473258 CSB-PGBD3P0DP91 1061 aa10.17□□□□□ -0.78
COL6A3-210ENST00000473258 LONP1P36776 959 aaKnown RBP10.17□□□□□ -0.78
COL6A3-210ENST00000473258 NUDCD3Q8IVD9 361 aa10.17□□□□□ -0.78
COL6A3-210ENST00000473258 FAM71BQ8TC56 605 aa10.17□□□□□ -0.78
COL6A3-210ENST00000473258 FBXO41Q8TF61 875 aa10.17□□□□□ -0.78
COL6A3-210ENST00000473258 SPZ1Q9BXG8 430 aa10.17□□□□□ -0.78
COL6A3-210ENST00000473258 G3BP2Q9UN86 482 aaKnown RBP10.17□□□□□ -0.78
COL6A3-210ENST00000473258 ARIH1Q9Y4X5 557 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-210ENST00000473258 KRT86O43790 486 aa10.17□□□□□ -0.78
COL6A3-210ENST00000473258 TMED10P49755 219 aaKnown RBP10.17□□□□□ -0.78
COL6A3-210ENST00000473258 FYB2Q5VWT5 728 aa10.17□□□□□ -0.78
COL6A3-210ENST00000473258 TRIML1Q8N9V2 468 aa10.17□□□□□ -0.78
COL6A3-210ENST00000473258 CENPKQ9BS16 269 aa10.17□□□□□ -0.78
COL6A3-210ENST00000473258 PANK3Q9H999 370 aa10.17□□□□□ -0.78
COL6A3-210ENST00000473258 AKR1B10O60218 316 aa10.17□□□□□ -0.78
COL6A3-210ENST00000473258 SKIP12755 728 aa10.17□□□□□ -0.78
COL6A3-210ENST00000473258 NOP2P46087 812 aaKnown RBP10.17□□□□□ -0.78
COL6A3-210ENST00000473258 DEUP1Q05D60 604 aa10.17□□□□□ -0.78
COL6A3-210ENST00000473258 FSIP1Q8NA03 581 aa10.17□□□□□ -0.78
COL6A3-210ENST00000473258 CCDC68Q9H2F9 335 aa10.17□□□□□ -0.78
COL6A3-210ENST00000473258 ATP5DP30049 168 aa10.17□□□□□ -0.78
COL6A3-210ENST00000473258 FBXO18Q8NFZ0 1043 aa10.17□□□□□ -0.78
COL6A3-210ENST00000473258 JAKMIP1Q96N16 626 aaKnown RBP10.17□□□□□ -0.78
COL6A3-210ENST00000473258 UBAC1Q9BSL1 405 aa10.17□□□□□ -0.78
COL6A3-210ENST00000473258 RBSNQ9H1K0 784 aa10.17□□□□□ -0.78
COL6A3-210ENST00000473258 DONSONQ9NYP3 566 aa10.17□□□□□ -0.78
COL6A3-210ENST00000473258 C9orf78Q9NZ63 289 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-210ENST00000473258 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.17□□□□□ -0.78
COL6A3-210ENST00000473258 CDKL5O76039 1030 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 KRT75O95678 551 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 ATP2B2Q01814 1243 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 TRPC3Q13507 836 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.16□□□□□ -0.78
COL6A3-210ENST00000473258 CEP70Q8NHQ1 597 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 FRMD4BQ9Y2L6 1034 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.16□□□□□ -0.78
COL6A3-210ENST00000473258 MAP3K21Q5TCX8 1036 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 BTN2A1Q7KYR7 527 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 TRIM22Q8IYM9 498 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 BRD4O60885 1362 aaPredicted RBP10.16□□□□□ -0.78
COL6A3-210ENST00000473258 ELP1O95163 1332 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 PSMD6Q15008 389 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 C17orf53Q8N3J3 647 aaPredicted RBP10.16□□□□□ -0.78
COL6A3-210ENST00000473258 CCHCR1Q8TD31 782 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 CAPZA3Q96KX2 299 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 SH2B1Q9NRF2 756 aaPredicted RBP10.16□□□□□ -0.78
COL6A3-210ENST00000473258 MX2P20592 715 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 KARSQ15046 597 aaKnown RBP10.16□□□□□ -0.78
COL6A3-210ENST00000473258 NBPF20Q3BBV1 942 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 CROCCP2Q86T23 111 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 AMOTL1Q8IY63 956 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 DDX21Q9NR30 783 aaKnown RBP eCLIP10.16□□□□□ -0.78
COL6A3-210ENST00000473258 MIS18AQ9NYP9 233 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 EIF3CLB5ME19 914 aaKnown RBP10.16□□□□□ -0.78
COL6A3-210ENST00000473258 BIN1O00499 593 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 ELF1P32519 619 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 PPP1R9BQ96SB3 815 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 MPHOSPH8Q99549 860 aa10.16□□□□□ -0.78
COL6A3-210ENST00000473258 EIF3CQ99613 913 aaKnown RBP10.16□□□□□ -0.78
COL6A3-210ENST00000473258 NOP53Q9NZM5 478 aaKnown RBP10.16□□□□□ -0.78
COL6A3-210ENST00000473258 SLC44A4Q53GD3 710 aa10.15□□□□□ -0.78
COL6A3-210ENST00000473258 CNNM3Q8NE01 707 aa10.15□□□□□ -0.78
COL6A3-210ENST00000473258 UBLCP1Q8WVY7 318 aaPredicted RBP10.15□□□□□ -0.78
COL6A3-210ENST00000473258 FBXO2Q9UK22 296 aaPredicted RBP10.15□□□□□ -0.78
COL6A3-210ENST00000473258 CNTLNQ9NXG0 1405 aa10.15□□□□□ -0.78
COL6A3-210ENST00000473258 KRT83P78385 493 aa10.15□□□□□ -0.78
COL6A3-210ENST00000473258 MAP7D3Q8IWC1 876 aa10.15□□□□□ -0.78
COL6A3-210ENST00000473258 KIAA2013Q8IYS2 634 aa10.15□□□□□ -0.78
COL6A3-210ENST00000473258 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.15□□□□□ -0.78
COL6A3-210ENST00000473258 ACTR5Q9H9F9 607 aaPredicted RBP10.15□□□□□ -0.78
COL6A3-210ENST00000473258 MTRF1LQ9UGC7 380 aaKnown RBP10.15□□□□□ -0.78
COL6A3-210ENST00000473258 CCDC7Q96M83 1385 aa10.15□□□□□ -0.78
COL6A3-210ENST00000473258 PHBP35232 272 aa10.15□□□□□ -0.78
COL6A3-210ENST00000473258 TNNC1P63316 161 aa10.15□□□□□ -0.78
COL6A3-210ENST00000473258 NEK1Q96PY6 1258 aa10.15□□□□□ -0.78
COL6A3-210ENST00000473258 LZTFL1Q9NQ48 299 aa10.15□□□□□ -0.78
COL6A3-210ENST00000473258 PPANQ9NQ55 473 aaKnown RBP10.15□□□□□ -0.78
COL6A3-210ENST00000473258 BMP2KQ9NSY1 1161 aaPredicted RBP10.15□□□□□ -0.78
COL6A3-210ENST00000473258 ENO4A6NNW6 628 aa10.15□□□□□ -0.79
COL6A3-210ENST00000473258 CCDC102BQ68D86 513 aa10.15□□□□□ -0.79
COL6A3-210ENST00000473258 CCDC80Q76M96 950 aa10.15□□□□□ -0.79
COL6A3-210ENST00000473258 PRPF38AQ8NAV1 312 aaKnown RBP10.15□□□□□ -0.79
COL6A3-210ENST00000473258 SPAG5Q96R06 1193 aa10.15□□□□□ -0.79
COL6A3-210ENST00000473258 CNGB3Q9NQW8 809 aa10.15□□□□□ -0.79
COL6A3-210ENST00000473258 BATF3Q9NR55 127 aa10.15□□□□□ -0.79
COL6A3-210ENST00000473258 ZNF215Q9UL58 517 aaPredicted RBP10.15□□□□□ -0.79
COL6A3-210ENST00000473258 TACC3Q9Y6A5 838 aa10.15□□□□□ -0.79
COL6A3-210ENST00000473258 hCG_2014768A0A024R1R8 64 aa10.14□□□□□ -0.79
COL6A3-210ENST00000473258 HGSO14964 777 aaPredicted RBP10.14□□□□□ -0.79
COL6A3-210ENST00000473258 STX6O43752 255 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms