RNA–Protein interactions for RNA: ENST00000472988.5

SMARCD3-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,654 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-209ENST00000472988 GPR108Q9NPR9 543 aa23.56■■□□□ 1.36
SMARCD3-209ENST00000472988 CEP126Q9P2H0 1117 aa23.56■■□□□ 1.36
SMARCD3-209ENST00000472988 METTL24Q5JXM2 366 aa23.55■■□□□ 1.36
SMARCD3-209ENST00000472988 KLRG2A4D1S0 409 aaPredicted RBP23.54■■□□□ 1.36
SMARCD3-209ENST00000472988 BMP2KLQ5H9B9 411 aa23.54■■□□□ 1.36
SMARCD3-209ENST00000472988 DDX46Q7L014 1031 aaKnown RBP23.54■■□□□ 1.36
SMARCD3-209ENST00000472988 BRIP1Q9BX63 1249 aa23.54■■□□□ 1.36
SMARCD3-209ENST00000472988 KIF13BQ9NQT8 1826 aa23.54■■□□□ 1.36
SMARCD3-209ENST00000472988 AOX1Q06278 1338 aa23.54■■□□□ 1.36
SMARCD3-209ENST00000472988 MROH5Q6ZUA9 1318 aa23.54■■□□□ 1.36
SMARCD3-209ENST00000472988 DBNLQ9UJU6 430 aaKnown RBP23.54■■□□□ 1.36
SMARCD3-209ENST00000472988 LRRC37AA6NMS7 1700 aa23.53■■□□□ 1.36
SMARCD3-209ENST00000472988 DLEC1Q9Y238 1755 aa23.53■■□□□ 1.36
SMARCD3-209ENST00000472988 RPGRQ92834 1020 aaKnown RBP23.53■■□□□ 1.36
SMARCD3-209ENST00000472988 A0A1B0GUL7 405 aa23.52■■□□□ 1.36
SMARCD3-209ENST00000472988 R3HDM1Q15032 1099 aaKnown RBP23.52■■□□□ 1.36
SMARCD3-209ENST00000472988 PI4K2BQ8TCG2 481 aa23.52■■□□□ 1.36
SMARCD3-209ENST00000472988 DBNDD2Q9BQY9 259 aa23.52■■□□□ 1.36
SMARCD3-209ENST00000472988 TTC41PQ6P2S7 1318 aa23.52■■□□□ 1.36
SMARCD3-209ENST00000472988 PDE8BO95263 885 aa23.51■■□□□ 1.35
SMARCD3-209ENST00000472988 RPS8P62241 208 aaKnown RBP23.51■■□□□ 1.35
SMARCD3-209ENST00000472988 ECHDC1Q9NTX5 307 aa23.51■■□□□ 1.35
SMARCD3-209ENST00000472988 BSDC1Q9NW68 430 aaPredicted RBP23.51■■□□□ 1.35
SMARCD3-209ENST00000472988 TIMM10P62072 90 aa23.51■■□□□ 1.35
SMARCD3-209ENST00000472988 GRAPQ13588 217 aa23.51■■□□□ 1.35
SMARCD3-209ENST00000472988 C8orf34Q49A92 452 aa23.51■■□□□ 1.35
SMARCD3-209ENST00000472988 GRAPLQ8TC17 118 aaPredicted RBP23.51■■□□□ 1.35
SMARCD3-209ENST00000472988 CHRNDQ07001 517 aa23.5■■□□□ 1.35
SMARCD3-209ENST00000472988 HELBQ8NG08 1087 aaPredicted RBP23.5■■□□□ 1.35
SMARCD3-209ENST00000472988 AKAP2Q9Y2D5 859 aa23.5■■□□□ 1.35
SMARCD3-209ENST00000472988 C10orf71Q711Q0 1435 aa23.5■■□□□ 1.35
SMARCD3-209ENST00000472988 ZBTB7AO95365 584 aa23.49■■□□□ 1.35
SMARCD3-209ENST00000472988 HOXA10P31260 410 aaPredicted RBP23.49■■□□□ 1.35
SMARCD3-209ENST00000472988 ATP2B3Q16720 1220 aa23.49■■□□□ 1.35
SMARCD3-209ENST00000472988 GPATCH3Q96I76 525 aa23.49■■□□□ 1.35
SMARCD3-209ENST00000472988 PDE6BP35913 854 aa23.48■■□□□ 1.35
SMARCD3-209ENST00000472988 RBM17Q96I25 401 aaKnown RBP23.48■■□□□ 1.35
SMARCD3-209ENST00000472988 NEUROD6Q96NK8 337 aa23.48■■□□□ 1.35
SMARCD3-209ENST00000472988 TAF5LO75529 589 aa23.48■■□□□ 1.35
SMARCD3-209ENST00000472988 SRGNP10124 158 aa23.48■■□□□ 1.35
SMARCD3-209ENST00000472988 ADORA1P30542 326 aa23.48■■□□□ 1.35
SMARCD3-209ENST00000472988 MINPP1Q9UNW1 487 aa23.48■■□□□ 1.35
SMARCD3-209ENST00000472988 LTBP1Q14766 1721 aa23.47■■□□□ 1.35
SMARCD3-209ENST00000472988 KIAA1551Q9HCM1 1747 aa23.47■■□□□ 1.35
SMARCD3-209ENST00000472988 AKAP11Q9UKA4 1901 aa23.47■■□□□ 1.35
SMARCD3-209ENST00000472988 FGFR2P21802 821 aa23.47■■□□□ 1.35
SMARCD3-209ENST00000472988 PUM3Q15397 648 aaKnown RBP23.47■■□□□ 1.35
SMARCD3-209ENST00000472988 SLC51AQ86UW1 340 aa23.47■■□□□ 1.35
SMARCD3-209ENST00000472988 PSDA5PKW4 1024 aaPredicted RBP23.46■■□□□ 1.35
SMARCD3-209ENST00000472988 GLRX3O76003 335 aaKnown RBP23.46■■□□□ 1.35
SMARCD3-209ENST00000472988 SDSP20132 328 aa23.46■■□□□ 1.35
SMARCD3-209ENST00000472988 CRAMP1Q96RY5 1269 aa23.46■■□□□ 1.35
SMARCD3-209ENST00000472988 MTFR1LQ9H019 292 aa23.46■■□□□ 1.35
SMARCD3-209ENST00000472988 SNAP23O00161 211 aa23.45■■□□□ 1.34
SMARCD3-209ENST00000472988 ERC2O15083 957 aa23.45■■□□□ 1.34
SMARCD3-209ENST00000472988 XAGE2Q96GT9 111 aa23.45■■□□□ 1.34
SMARCD3-209ENST00000472988 BACH2Q9BYV9 841 aa23.45■■□□□ 1.34
SMARCD3-209ENST00000472988 NPR1P16066 1061 aa23.44■■□□□ 1.34
SMARCD3-209ENST00000472988 SLX4Q8IY92 1834 aa23.44■■□□□ 1.34
SMARCD3-209ENST00000472988 MYH13Q9UKX3 1938 aa23.43■■□□□ 1.34
SMARCD3-209ENST00000472988 LPIN2Q92539 896 aa23.43■■□□□ 1.34
SMARCD3-209ENST00000472988 ATF5Q9Y2D1 282 aaPredicted RBP23.43■■□□□ 1.34
SMARCD3-209ENST00000472988 ATP5JP18859 108 aa23.42■■□□□ 1.34
SMARCD3-209ENST00000472988 C2CD5Q86YS7 1000 aa23.42■■□□□ 1.34
SMARCD3-209ENST00000472988 MAP4K4O95819 1239 aaPredicted RBP23.41■■□□□ 1.34
SMARCD3-209ENST00000472988 SLC5A1P13866 664 aa23.41■■□□□ 1.34
SMARCD3-209ENST00000472988 MASTLQ96GX5 879 aa23.41■■□□□ 1.34
SMARCD3-209ENST00000472988 BOLA2Q9H3K6 86 aa23.41■■□□□ 1.34
SMARCD3-209ENST00000472988 WTIPA6NIX2 430 aaPredicted RBP23.41■■□□□ 1.34
SMARCD3-209ENST00000472988 TRIM6-TRIM34B2RNG4 842 aa23.41■■□□□ 1.34
SMARCD3-209ENST00000472988 BBOX1O75936 387 aa23.4■■□□□ 1.34
SMARCD3-209ENST00000472988 ANKRD2Q9GZV1 360 aa23.4■■□□□ 1.34
SMARCD3-209ENST00000472988 BRCA1P38398 1863 aaKnown RBP23.4■■□□□ 1.34
SMARCD3-209ENST00000472988 MYO5AQ9Y4I1 1855 aaKnown RBP23.4■■□□□ 1.34
SMARCD3-209ENST00000472988 MYH7P12883 1935 aa23.39■■□□□ 1.34
SMARCD3-209ENST00000472988 H0YIN7 160 aa23.39■■□□□ 1.34
SMARCD3-209ENST00000472988 PPEF1O14829 653 aaPredicted RBP23.39■■□□□ 1.34
SMARCD3-209ENST00000472988 CHRNA5P30532 468 aa23.39■■□□□ 1.34
SMARCD3-209ENST00000472988 GORABQ5T7V8 394 aa23.39■■□□□ 1.34
SMARCD3-209ENST00000472988 CDC45O75419 566 aa23.38■■□□□ 1.33
SMARCD3-209ENST00000472988 IFIT1P09914 478 aaKnown RBP23.38■■□□□ 1.33
SMARCD3-209ENST00000472988 UBE4AQ14139 1066 aa23.38■■□□□ 1.33
SMARCD3-209ENST00000472988 STYK1Q6J9G0 422 aa23.38■■□□□ 1.33
SMARCD3-209ENST00000472988 RILPL2Q969X0 211 aa23.38■■□□□ 1.33
SMARCD3-209ENST00000472988 TSHZ2Q9NRE2 1034 aa23.38■■□□□ 1.33
SMARCD3-209ENST00000472988 POLD1P28340 1107 aa23.38■■□□□ 1.33
SMARCD3-209ENST00000472988 CCDC158Q5M9N0 1113 aa23.38■■□□□ 1.33
SMARCD3-209ENST00000472988 TBC1D9Q6ZT07 1266 aa23.38■■□□□ 1.33
SMARCD3-209ENST00000472988 HAUS7Q99871 368 aa23.38■■□□□ 1.33
SMARCD3-209ENST00000472988 SGIP1Q9BQI5 828 aa23.38■■□□□ 1.33
SMARCD3-209ENST00000472988 DUOX1Q9NRD9 1551 aa23.37■■□□□ 1.33
SMARCD3-209ENST00000472988 ALDH1B1P30837 517 aa23.37■■□□□ 1.33
SMARCD3-209ENST00000472988 PHKA1P46020 1223 aa23.37■■□□□ 1.33
SMARCD3-209ENST00000472988 TTC39AQ5SRH9 613 aa23.37■■□□□ 1.33
SMARCD3-209ENST00000472988 CNTROBQ8N137 903 aa23.37■■□□□ 1.33
SMARCD3-209ENST00000472988 ZNF622Q969S3 477 aaKnown RBP eCLIP23.37■■□□□ 1.33
SMARCD3-209ENST00000472988 NDUFB9Q9Y6M9 179 aa23.37■■□□□ 1.33
SMARCD3-209ENST00000472988 DOCK2Q92608 1830 aa23.36■■□□□ 1.33
SMARCD3-209ENST00000472988 CCDC102BQ68D86 513 aa23.36■■□□□ 1.33
SMARCD3-209ENST00000472988 TMC4Q7Z404 712 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms