RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 DNAI1Q9UI46 699 aa15.08■□□□□ 0
COL6A3-209ENST00000472056 MACROD2A1Z1Q3 448 aa15.08■□□□□ 0
COL6A3-209ENST00000472056 SSFA2P28290 1259 aa15.08■□□□□ 0
COL6A3-209ENST00000472056 ANO6Q4KMQ2 910 aa15.08■□□□□ 0
COL6A3-209ENST00000472056 VWA3BQ502W6 1294 aa15.08■□□□□ 0
COL6A3-209ENST00000472056 AFAP1L2Q8N4X5 818 aa15.08■□□□□ 0
COL6A3-209ENST00000472056 TSR2Q969E8 191 aaKnown RBP15.08■□□□□ 0
COL6A3-209ENST00000472056 IFIT1P09914 478 aaKnown RBP15.08■□□□□ 0
COL6A3-209ENST00000472056 CABP4P57796 275 aa15.08■□□□□ 0
COL6A3-209ENST00000472056 INTS8Q75QN2 995 aaKnown RBP15.08■□□□□ 0
COL6A3-209ENST00000472056 SLC8A1P32418 973 aa15.08■□□□□ 0
COL6A3-209ENST00000472056 IARSP41252 1262 aaKnown RBP15.08■□□□□ 0
COL6A3-209ENST00000472056 TRIM47Q96LD4 638 aa15.08■□□□□ 0
COL6A3-209ENST00000472056 NESP48681 1621 aa15.07■□□□□ 0
COL6A3-209ENST00000472056 PRPF40BQ6NWY9 871 aaKnown RBP15.07■□□□□ 0
COL6A3-209ENST00000472056 WHAMMP3Q1A5X7 153 aa15.07■□□□□ 0
COL6A3-209ENST00000472056 KRT23Q9C075 422 aa15.07■□□□□ 0
COL6A3-209ENST00000472056 CALML3P27482 149 aa15.07■□□□□ 0
COL6A3-209ENST00000472056 INPP5BP32019 993 aa15.07■□□□□ 0
COL6A3-209ENST00000472056 CABP2Q9NPB3 220 aa15.07■□□□□ 0
COL6A3-209ENST00000472056 SULT6B1Q6IMI4 303 aa15.07■□□□□ 0
COL6A3-209ENST00000472056 NUTM2AQ8IVF1 878 aaPredicted RBP15.07■□□□□ 0
COL6A3-209ENST00000472056 KCNH5Q8NCM2 988 aa15.07■□□□□ 0
COL6A3-209ENST00000472056 RAB3IPQ96QF0 476 aaPredicted RBP15.07■□□□□ 0
COL6A3-209ENST00000472056 VPS18Q9P253 973 aa15.07■□□□□ 0
COL6A3-209ENST00000472056 XRCC6P12956 609 aaKnown RBP eCLIP15.07■□□□□ 0
COL6A3-209ENST00000472056 SUDS3Q9H7L9 328 aaPredicted RBP15.07■□□□□ 0
COL6A3-209ENST00000472056 RAB3GAP1Q15042 981 aa15.07■□□□□ 0
COL6A3-209ENST00000472056 NCOA7Q8NI08 942 aa15.07■□□□□ 0
COL6A3-209ENST00000472056 SPAG5Q96R06 1193 aa15.07■□□□□ 0
COL6A3-209ENST00000472056 IGF1RP08069 1367 aa15.06■□□□□ 0
COL6A3-209ENST00000472056 SMC5Q8IY18 1101 aa15.06■□□□□ 0
COL6A3-209ENST00000472056 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.06■□□□□ 0
COL6A3-209ENST00000472056 TTC22Q5TAA0 569 aa15.06■□□□□ 0
COL6A3-209ENST00000472056 ZNF365Q70YC5 407 aa15.06■□□□□ 0
COL6A3-209ENST00000472056 IFT20Q8IY31 132 aa15.06■□□□□ 0
COL6A3-209ENST00000472056 NUCB1Q02818 461 aa15.06■□□□□ 0
COL6A3-209ENST00000472056 MYRIPQ8NFW9 859 aa15.06■□□□□ 0
COL6A3-209ENST00000472056 THEGQ9P2T0 379 aa15.06■□□□□ 0
COL6A3-209ENST00000472056 SOS1Q07889 1333 aaPredicted RBP15.06■□□□□ 0
COL6A3-209ENST00000472056 RPRD2Q5VT52 1461 aaKnown RBP15.06■□□□□ 0
COL6A3-209ENST00000472056 TTF2Q9UNY4 1162 aaKnown RBP15.06■□□□□ 0
COL6A3-209ENST00000472056 KIF1BO60333 1816 aa15.06■□□□□ 0
COL6A3-209ENST00000472056 MSH5O43196 834 aa15.06■□□□□ 0
COL6A3-209ENST00000472056 PRC1O43663 620 aa15.06■□□□□ 0
COL6A3-209ENST00000472056 CEP120Q8N960 986 aa15.06■□□□□ 0
COL6A3-209ENST00000472056 VCX3AQ9NNX9 186 aa15.06■□□□□ 0
COL6A3-209ENST00000472056 MKNK2Q9HBH9 465 aa15.05■□□□□ 0
COL6A3-209ENST00000472056 ECHDC1Q9NTX5 307 aa15.05■□□□□ 0
COL6A3-209ENST00000472056 TXNDC16Q9P2K2 825 aa15.05■□□□□ 0
COL6A3-209ENST00000472056 MTMR3Q13615 1198 aa15.05■□□□□ 0
COL6A3-209ENST00000472056 DNMBPQ6XZF7 1577 aa15.05■□□□□ 0
COL6A3-209ENST00000472056 RABGAP1Q9Y3P9 1069 aa15.05■□□□□ 0
COL6A3-209ENST00000472056 CCDC42Q96M95 316 aa15.05■□□□□ 0
COL6A3-209ENST00000472056 COMMD10Q9Y6G5 202 aa15.05■□□□□ 0
COL6A3-209ENST00000472056 MYCBPQ99417 103 aaPredicted RBP15.05■□□□□ -0
COL6A3-209ENST00000472056 STAT6P42226 847 aa15.05■□□□□ -0
COL6A3-209ENST00000472056 CCDC62Q6P9F0 684 aa15.05■□□□□ -0
COL6A3-209ENST00000472056 PIK3R4Q99570 1358 aa15.05■□□□□ -0
COL6A3-209ENST00000472056 TYRO3Q06418 890 aa15.05■□□□□ -0
COL6A3-209ENST00000472056 MPNDQ8N594 471 aa15.05■□□□□ -0
COL6A3-209ENST00000472056 SIL1Q9H173 461 aa15.05■□□□□ -0
COL6A3-209ENST00000472056 SLC5A1P13866 664 aa15.04■□□□□ -0
COL6A3-209ENST00000472056 PCK1P35558 622 aa15.04■□□□□ -0
COL6A3-209ENST00000472056 CALCOCO2Q13137 446 aa15.04■□□□□ -0
COL6A3-209ENST00000472056 METAP2P50579 478 aaKnown RBP eCLIP15.04■□□□□ -0
COL6A3-209ENST00000472056 SPTY2D1Q68D10 685 aaPredicted RBP15.04■□□□□ -0
COL6A3-209ENST00000472056 ZNF530Q6P9A1 599 aaPredicted RBP15.04■□□□□ -0
COL6A3-209ENST00000472056 STK24Q9Y6E0 443 aa15.04■□□□□ -0
COL6A3-209ENST00000472056 TBCAO75347 108 aaKnown RBP15.04■□□□□ -0
COL6A3-209ENST00000472056 LARSQ9P2J5 1176 aaKnown RBP15.04■□□□□ -0
COL6A3-209ENST00000472056 RTL1A6NKG5 1358 aa15.04■□□□□ -0
COL6A3-209ENST00000472056 SEPT14Q6ZU15 432 aa15.04■□□□□ -0
COL6A3-209ENST00000472056 FERMT3Q86UX7 667 aa15.04■□□□□ -0
COL6A3-209ENST00000472056 HOXA7P31268 230 aaPredicted RBP15.04■□□□□ -0
COL6A3-209ENST00000472056 MAP2K2P36507 400 aa15.04■□□□□ -0
COL6A3-209ENST00000472056 CFAP157Q5JU67 520 aa15.04■□□□□ -0
COL6A3-209ENST00000472056 ODF2LQ9ULJ1 636 aa15.04■□□□□ -0
COL6A3-209ENST00000472056 MTMR7Q9Y216 660 aa15.04■□□□□ -0
COL6A3-209ENST00000472056 KDM4AO75164 1064 aa15.03■□□□□ -0
COL6A3-209ENST00000472056 NLRP5P59047 1200 aa15.03■□□□□ -0
COL6A3-209ENST00000472056 GAS8O95995 478 aa15.03■□□□□ -0
COL6A3-209ENST00000472056 NEDD9Q14511 834 aa15.03■□□□□ -0
COL6A3-209ENST00000472056 NEK1Q96PY6 1258 aa15.03■□□□□ -0
COL6A3-209ENST00000472056 SCAF11Q99590 1463 aaKnown RBP15.03■□□□□ -0
COL6A3-209ENST00000472056 IDH1O75874 414 aaKnown RBP15.03■□□□□ -0
COL6A3-209ENST00000472056 SYCP3Q8IZU3 236 aa15.03■□□□□ -0
COL6A3-209ENST00000472056 SMC1BQ8NDV3 1235 aa15.03■□□□□ -0
COL6A3-209ENST00000472056 FAN1Q9Y2M0 1017 aa15.03■□□□□ -0
COL6A3-209ENST00000472056 HMGXB3Q12766 1538 aa15.03■□□□□ -0
COL6A3-209ENST00000472056 SAMD1Q6SPF0 538 aaPredicted RBP15.03■□□□□ -0
COL6A3-209ENST00000472056 UTP11Q9Y3A2 253 aaKnown RBP15.03■□□□□ -0
COL6A3-209ENST00000472056 NUF2Q9BZD4 464 aa15.03■□□□□ -0
COL6A3-209ENST00000472056 MED4Q9NPJ6 270 aa15.03■□□□□ -0
COL6A3-209ENST00000472056 GOLGA6CA6NDK9 693 aa15.02■□□□□ -0
COL6A3-209ENST00000472056 NDUFAB1O14561 156 aa15.02■□□□□ -0
COL6A3-209ENST00000472056 GOLGA6DP0CG33 693 aa15.02■□□□□ -0
COL6A3-209ENST00000472056 PUS7Q96PZ0 661 aaKnown RBP15.02■□□□□ -0
COL6A3-209ENST00000472056 GOLGA6AQ9NYA3 693 aa15.02■□□□□ -0
COL6A3-209ENST00000472056 Q9H521 79 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms