RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 TPTE2Q6XPS3 522 aa11.42□□□□□ -0.58
VPS52-216ENST00000471309 AKT1S1Q96B36 256 aa11.42□□□□□ -0.58
VPS52-216ENST00000471309 ESYT1Q9BSJ8 1104 aa11.42□□□□□ -0.58
VPS52-216ENST00000471309 CNNM1Q9NRU3 951 aa11.42□□□□□ -0.58
VPS52-216ENST00000471309 NRXN2Q9P2S2 1712 aa11.41□□□□□ -0.58
VPS52-216ENST00000471309 HIP1O00291 1037 aa11.41□□□□□ -0.58
VPS52-216ENST00000471309 EPB41L2O43491 1005 aaKnown RBP11.41□□□□□ -0.58
VPS52-216ENST00000471309 GTF2E1P29083 439 aaPredicted RBP11.41□□□□□ -0.58
VPS52-216ENST00000471309 NFIXQ14938 502 aa11.41□□□□□ -0.58
VPS52-216ENST00000471309 ATP2B3Q16720 1220 aa11.41□□□□□ -0.58
VPS52-216ENST00000471309 ZNF827Q17R98 1081 aa11.41□□□□□ -0.58
VPS52-216ENST00000471309 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.41□□□□□ -0.58
VPS52-216ENST00000471309 UPF1Q92900 1129 aaKnown RBP eCLIP11.41□□□□□ -0.58
VPS52-216ENST00000471309 CDC5LQ99459 802 aaKnown RBP11.41□□□□□ -0.58
VPS52-216ENST00000471309 PDE8BO95263 885 aa11.4□□□□□ -0.58
VPS52-216ENST00000471309 IGHMBP2P38935 993 aaKnown RBP11.4□□□□□ -0.58
VPS52-216ENST00000471309 C3orf67Q6ZVT6 689 aa11.4□□□□□ -0.58
VPS52-216ENST00000471309 TICAM2Q86XR7 235 aa11.4□□□□□ -0.58
VPS52-216ENST00000471309 FLAD1Q8NFF5 587 aa11.4□□□□□ -0.58
VPS52-216ENST00000471309 NEUROD6Q96NK8 337 aa11.4□□□□□ -0.58
VPS52-216ENST00000471309 MPHOSPH8Q99549 860 aa11.4□□□□□ -0.58
VPS52-216ENST00000471309 HAUS7Q99871 368 aa11.4□□□□□ -0.58
VPS52-216ENST00000471309 BOLA2Q9H3K6 86 aa11.4□□□□□ -0.58
VPS52-216ENST00000471309 SEC31BQ9NQW1 1179 aa11.4□□□□□ -0.58
VPS52-216ENST00000471309 RAD50Q92878 1312 aa11.39□□□□□ -0.59
VPS52-216ENST00000471309 SGSM2O43147 1006 aa11.39□□□□□ -0.59
VPS52-216ENST00000471309 TIMM10P62072 90 aa11.39□□□□□ -0.59
VPS52-216ENST00000471309 PUM3Q15397 648 aaKnown RBP11.39□□□□□ -0.59
VPS52-216ENST00000471309 CNBD1Q8NA66 436 aa11.39□□□□□ -0.59
VPS52-216ENST00000471309 RUFY2Q8WXA3 655 aa11.39□□□□□ -0.59
VPS52-216ENST00000471309 XAGE2Q96GT9 111 aa11.39□□□□□ -0.59
VPS52-216ENST00000471309 NLRP3Q96P20 1036 aa11.39□□□□□ -0.59
VPS52-216ENST00000471309 USP26Q9BXU7 913 aa11.39□□□□□ -0.59
VPS52-216ENST00000471309 DIAPH3Q9NSV4 1193 aa11.39□□□□□ -0.59
VPS52-216ENST00000471309 FGFR2P21802 821 aa11.38□□□□□ -0.59
VPS52-216ENST00000471309 TM4SF1P30408 202 aa11.38□□□□□ -0.59
VPS52-216ENST00000471309 CCDC158Q5M9N0 1113 aa11.38□□□□□ -0.59
VPS52-216ENST00000471309 PRR5LQ6MZQ0 368 aa11.38□□□□□ -0.59
VPS52-216ENST00000471309 ANKRD18AQ8IVF6 992 aa11.38□□□□□ -0.59
VPS52-216ENST00000471309 LPIN2Q92539 896 aa11.38□□□□□ -0.59
VPS52-216ENST00000471309 ZNF512BQ96KM6 892 aaPredicted RBP11.38□□□□□ -0.59
VPS52-216ENST00000471309 FSD1Q9BTV5 496 aa11.38□□□□□ -0.59
VPS52-216ENST00000471309 SNRKQ9NRH2 765 aa11.38□□□□□ -0.59
VPS52-216ENST00000471309 TFCP2L1Q9NZI6 479 aa11.38□□□□□ -0.59
VPS52-216ENST00000471309 ADORA1P30542 326 aa11.37□□□□□ -0.59
VPS52-216ENST00000471309 TTC39AQ5SRH9 613 aa11.37□□□□□ -0.59
VPS52-216ENST00000471309 GORABQ5T7V8 394 aa11.37□□□□□ -0.59
VPS52-216ENST00000471309 TAF1P21675 1872 aa11.37□□□□□ -0.59
VPS52-216ENST00000471309 MED23Q9ULK4 1368 aa11.37□□□□□ -0.59
VPS52-216ENST00000471309 AKAP11Q9UKA4 1901 aa11.37□□□□□ -0.59
VPS52-216ENST00000471309 PNPLA7Q6ZV29 1317 aa11.36□□□□□ -0.59
VPS52-216ENST00000471309 LRRC37AA6NMS7 1700 aa11.36□□□□□ -0.59
VPS52-216ENST00000471309 POLRMTO00411 1230 aaKnown RBP11.36□□□□□ -0.59
VPS52-216ENST00000471309 NPHP1O15259 732 aa11.36□□□□□ -0.59
VPS52-216ENST00000471309 IFIT1P09914 478 aaKnown RBP11.36□□□□□ -0.59
VPS52-216ENST00000471309 SLC5A1P13866 664 aa11.36□□□□□ -0.59
VPS52-216ENST00000471309 ST5P78524 1137 aa11.36□□□□□ -0.59
VPS52-216ENST00000471309 BECN1Q14457 450 aa11.36□□□□□ -0.59
VPS52-216ENST00000471309 CWC27Q6UX04 472 aaKnown RBP11.36□□□□□ -0.59
VPS52-216ENST00000471309 KBTBD3Q8NAB2 608 aa11.36□□□□□ -0.59
VPS52-216ENST00000471309 CAMKK2Q96RR4 588 aa11.36□□□□□ -0.59
VPS52-216ENST00000471309 DNAJC2Q99543 621 aaKnown RBP11.36□□□□□ -0.59
VPS52-216ENST00000471309 KIF2CQ99661 725 aa11.36□□□□□ -0.59
VPS52-216ENST00000471309 IL25Q9H293 177 aa11.36□□□□□ -0.59
VPS52-216ENST00000471309 ANO2Q9NQ90 1003 aa11.36□□□□□ -0.59
VPS52-216ENST00000471309 BSDC1Q9NW68 430 aaPredicted RBP11.36□□□□□ -0.59
VPS52-216ENST00000471309 PAG1Q9NWQ8 432 aa11.36□□□□□ -0.59
VPS52-216ENST00000471309 ANKRD31Q8N7Z5 1873 aa11.36□□□□□ -0.59
VPS52-216ENST00000471309 DOCK2Q92608 1830 aa11.35□□□□□ -0.59
VPS52-216ENST00000471309 MYH7P12883 1935 aa11.35□□□□□ -0.59
VPS52-216ENST00000471309 SERPINB2P05120 415 aa11.35□□□□□ -0.59
VPS52-216ENST00000471309 UQCRFS1P1P0C7P4 283 aa11.35□□□□□ -0.59
VPS52-216ENST00000471309 MCCP23508 829 aa11.35□□□□□ -0.59
VPS52-216ENST00000471309 ARID4AP29374 1257 aaPredicted RBP11.35□□□□□ -0.59
VPS52-216ENST00000471309 CHRNDQ07001 517 aa11.35□□□□□ -0.59
VPS52-216ENST00000471309 DDR1Q08345 913 aa11.35□□□□□ -0.59
VPS52-216ENST00000471309 NMIQ13287 307 aaPredicted RBP11.35□□□□□ -0.59
VPS52-216ENST00000471309 COL23A1Q86Y22 540 aaPredicted RBP11.35□□□□□ -0.59
VPS52-216ENST00000471309 NLGN1Q8N2Q7 840 aa11.35□□□□□ -0.59
VPS52-216ENST00000471309 CELF1Q92879 486 aaKnown RBP11.35□□□□□ -0.59
VPS52-216ENST00000471309 IL17RAQ96F46 866 aa11.35□□□□□ -0.59
VPS52-216ENST00000471309 EDC3Q96F86 508 aaKnown RBP11.35□□□□□ -0.59
VPS52-216ENST00000471309 RNF216Q9NWF9 866 aaPredicted RBP11.35□□□□□ -0.59
VPS52-216ENST00000471309 GOLIM4O00461 696 aa11.34□□□□□ -0.59
VPS52-216ENST00000471309 ANAPC15P60006 121 aa11.34□□□□□ -0.59
VPS52-216ENST00000471309 RPS8P62241 208 aaKnown RBP11.34□□□□□ -0.59
VPS52-216ENST00000471309 RABEP1Q15276 862 aa11.34□□□□□ -0.59
VPS52-216ENST00000471309 CRY2Q49AN0 593 aa11.34□□□□□ -0.59
VPS52-216ENST00000471309 DDX46Q7L014 1031 aaKnown RBP11.34□□□□□ -0.59
VPS52-216ENST00000471309 HELBQ8NG08 1087 aaPredicted RBP11.34□□□□□ -0.59
VPS52-216ENST00000471309 LSG1Q9H089 658 aaKnown RBP11.34□□□□□ -0.59
VPS52-216ENST00000471309 COL11A2P13942 1736 aaPredicted RBP11.33□□□□□ -0.6
VPS52-216ENST00000471309 A0A0D9SFI3 127 aa11.33□□□□□ -0.6
VPS52-216ENST00000471309 TAF5LO75529 589 aa11.33□□□□□ -0.6
VPS52-216ENST00000471309 HSPA4P34932 840 aa11.33□□□□□ -0.6
VPS52-216ENST00000471309 GRAPQ13588 217 aa11.33□□□□□ -0.6
VPS52-216ENST00000471309 SCARF1Q14162 830 aa11.33□□□□□ -0.6
VPS52-216ENST00000471309 EZH2Q15910 746 aaKnown RBP11.33□□□□□ -0.6
VPS52-216ENST00000471309 LRRFIP1Q32MZ4 808 aaKnown RBP11.33□□□□□ -0.6
VPS52-216ENST00000471309 CCDC102BQ68D86 513 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms