RNA–Protein interactions for RNA: ENST00000471260.1

HMGN1-211, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-211ENST00000471260 DPF2Q92785 391 aa17.21■□□□□ 0.35
HMGN1-211ENST00000471260 GGA1Q9UJY5 639 aa17.21■□□□□ 0.35
HMGN1-211ENST00000471260 ZC3H15Q8WU90 426 aaKnown RBP17.2■□□□□ 0.34
HMGN1-211ENST00000471260 BSDC1Q9NW68 430 aaPredicted RBP17.2■□□□□ 0.34
HMGN1-211ENST00000471260 XDHP47989 1333 aa17.2■□□□□ 0.34
HMGN1-211ENST00000471260 ZNF521Q96K83 1311 aa17.2■□□□□ 0.34
HMGN1-211ENST00000471260 COL4A1P02462 1669 aa17.2■□□□□ 0.34
HMGN1-211ENST00000471260 CNTNAP1P78357 1384 aa17.19■□□□□ 0.34
HMGN1-211ENST00000471260 H7C1D1 291 aa17.19■□□□□ 0.34
HMGN1-211ENST00000471260 RIMBP2O15034 1052 aa17.19■□□□□ 0.34
HMGN1-211ENST00000471260 RPS12P25398 132 aaKnown RBP17.19■□□□□ 0.34
HMGN1-211ENST00000471260 UBE3BQ7Z3V4 1068 aa17.19■□□□□ 0.34
HMGN1-211ENST00000471260 CCDC85AQ96PX6 553 aaPredicted RBP17.19■□□□□ 0.34
HMGN1-211ENST00000471260 DBNDD1Q9H9R9 158 aa17.19■□□□□ 0.34
HMGN1-211ENST00000471260 PGAP2Q9UHJ9 254 aa17.19■□□□□ 0.34
HMGN1-211ENST00000471260 CNOT7Q9UIV1 285 aaKnown RBP17.19■□□□□ 0.34
HMGN1-211ENST00000471260 ECE2O60344 883 aa17.18■□□□□ 0.34
HMGN1-211ENST00000471260 UFL1O94874 794 aa17.18■□□□□ 0.34
HMGN1-211ENST00000471260 ATP2B4P23634 1241 aa17.18■□□□□ 0.34
HMGN1-211ENST00000471260 MYH3P11055 1940 aa17.17■□□□□ 0.34
HMGN1-211ENST00000471260 G3V3G9 751 aa17.17■□□□□ 0.34
HMGN1-211ENST00000471260 PSMD14O00487 310 aa17.17■□□□□ 0.34
HMGN1-211ENST00000471260 CSF1RP07333 972 aa17.17■□□□□ 0.34
HMGN1-211ENST00000471260 CASP7P55210 303 aa17.17■□□□□ 0.34
HMGN1-211ENST00000471260 DCAF8Q5TAQ9 597 aa17.17■□□□□ 0.34
HMGN1-211ENST00000471260 GREM2Q9H772 168 aa17.17■□□□□ 0.34
HMGN1-211ENST00000471260 MKRN1Q9UHC7 482 aaKnown RBP17.17■□□□□ 0.34
HMGN1-211ENST00000471260 IGHMBP2P38935 993 aaKnown RBP17.16■□□□□ 0.34
HMGN1-211ENST00000471260 DOK7Q18PE1 504 aa17.16■□□□□ 0.34
HMGN1-211ENST00000471260 YTHDC1Q96MU7 727 aaKnown RBP17.16■□□□□ 0.34
HMGN1-211ENST00000471260 MINPP1Q9UNW1 487 aa17.16■□□□□ 0.34
HMGN1-211ENST00000471260 RASSF10A6NK89 507 aa17.15■□□□□ 0.34
HMGN1-211ENST00000471260 VIL1P09327 827 aaKnown RBP17.15■□□□□ 0.34
HMGN1-211ENST00000471260 BEND3Q5T5X7 828 aa17.15■□□□□ 0.34
HMGN1-211ENST00000471260 MICALL2Q8IY33 904 aa17.15■□□□□ 0.34
HMGN1-211ENST00000471260 E9PSI1 815 aa17.14■□□□□ 0.33
HMGN1-211ENST00000471260 ITGA6P23229 1130 aa17.14■□□□□ 0.33
HMGN1-211ENST00000471260 DEFB115Q30KQ5 88 aa17.14■□□□□ 0.33
HMGN1-211ENST00000471260 IFFO2Q5TF58 517 aa17.14■□□□□ 0.33
HMGN1-211ENST00000471260 PODNQ7Z5L7 613 aa17.14■□□□□ 0.33
HMGN1-211ENST00000471260 LEMD3Q9Y2U8 911 aa17.14■□□□□ 0.33
HMGN1-211ENST00000471260 ZBTB12Q9Y330 459 aaPredicted RBP17.14■□□□□ 0.33
HMGN1-211ENST00000471260 PCNTO95613 3336 aa17.14■□□□□ 0.33
HMGN1-211ENST00000471260 F6X3S4 739 aa17.13■□□□□ 0.33
HMGN1-211ENST00000471260 HSPA1AP0DMV8 641 aaKnown RBP17.13■□□□□ 0.33
HMGN1-211ENST00000471260 HSPA1BP0DMV9 641 aaKnown RBP17.13■□□□□ 0.33
HMGN1-211ENST00000471260 HIRAP54198 1017 aaPredicted RBP17.13■□□□□ 0.33
HMGN1-211ENST00000471260 CDC37L1Q7L3B6 337 aa17.13■□□□□ 0.33
HMGN1-211ENST00000471260 GPR101Q96P66 508 aaPredicted RBP17.13■□□□□ 0.33
HMGN1-211ENST00000471260 MPHOSPH8Q99549 860 aa17.13■□□□□ 0.33
HMGN1-211ENST00000471260 MED23Q9ULK4 1368 aa17.13■□□□□ 0.33
HMGN1-211ENST00000471260 ZNF609O15014 1411 aa17.13■□□□□ 0.33
HMGN1-211ENST00000471260 CCER2I3L3R5 266 aa17.12■□□□□ 0.33
HMGN1-211ENST00000471260 CCT4P50991 539 aaKnown RBP17.12■□□□□ 0.33
HMGN1-211ENST00000471260 AGBL3Q8NEM8 1001 aa17.12■□□□□ 0.33
HMGN1-211ENST00000471260 TRPM4Q8TD43 1214 aa17.12■□□□□ 0.33
HMGN1-211ENST00000471260 ANKRD2Q9GZV1 360 aa17.12■□□□□ 0.33
HMGN1-211ENST00000471260 KCNQ5Q9NR82 932 aa17.12■□□□□ 0.33
HMGN1-211ENST00000471260 ABT1Q9ULW3 272 aaKnown RBP17.12■□□□□ 0.33
HMGN1-211ENST00000471260 ANKRD18BA2A2Z9 1011 aa17.11■□□□□ 0.33
HMGN1-211ENST00000471260 ALDH1L1O75891 902 aa17.11■□□□□ 0.33
HMGN1-211ENST00000471260 VEGFBP49765 207 aa17.11■□□□□ 0.33
HMGN1-211ENST00000471260 FAM161AQ3B820 660 aa17.11■□□□□ 0.33
HMGN1-211ENST00000471260 CST9Q5W186 159 aa17.11■□□□□ 0.33
HMGN1-211ENST00000471260 TRPM7Q96QT4 1865 aa17.1■□□□□ 0.33
HMGN1-211ENST00000471260 GRM8O00222 908 aa17.1■□□□□ 0.33
HMGN1-211ENST00000471260 TRAF5O00463 557 aa17.1■□□□□ 0.33
HMGN1-211ENST00000471260 IFIT5Q13325 482 aaKnown RBP17.1■□□□□ 0.33
HMGN1-211ENST00000471260 RSBN1LQ6PCB5 846 aaPredicted RBP17.1■□□□□ 0.33
HMGN1-211ENST00000471260 SRCIN1Q9C0H9 1055 aa17.1■□□□□ 0.33
HMGN1-211ENST00000471260 COA1Q9GZY4 146 aa17.1■□□□□ 0.33
HMGN1-211ENST00000471260 SHTN1A0MZ66 631 aa17.09■□□□□ 0.33
HMGN1-211ENST00000471260 USP17L3A6NCW0 530 aa17.09■□□□□ 0.33
HMGN1-211ENST00000471260 USP17L4A6NCW7 530 aa17.09■□□□□ 0.33
HMGN1-211ENST00000471260 ECE1P42892 770 aa17.09■□□□□ 0.33
HMGN1-211ENST00000471260 FOXO4P98177 505 aa17.09■□□□□ 0.33
HMGN1-211ENST00000471260 SLFN5Q08AF3 891 aa17.09■□□□□ 0.33
HMGN1-211ENST00000471260 USP17L1Q7RTZ2 530 aa17.09■□□□□ 0.33
HMGN1-211ENST00000471260 SAMD7Q7Z3H4 446 aa17.09■□□□□ 0.33
HMGN1-211ENST00000471260 GLIS2Q9BZE0 524 aaPredicted RBP17.09■□□□□ 0.33
HMGN1-211ENST00000471260 C9orf78Q9NZ63 289 aaPredicted RBP17.09■□□□□ 0.33
HMGN1-211ENST00000471260 TLL2Q9Y6L7 1015 aa17.09■□□□□ 0.33
HMGN1-211ENST00000471260 SCN9AQ15858 1988 aa17.09■□□□□ 0.33
HMGN1-211ENST00000471260 ZNF804BA4D1E1 1349 aa17.08■□□□□ 0.32
HMGN1-211ENST00000471260 PTPRCP08575 1304 aa17.08■□□□□ 0.32
HMGN1-211ENST00000471260 WDR33Q9C0J8 1336 aaKnown RBP17.08■□□□□ 0.32
HMGN1-211ENST00000471260 MMP14P50281 582 aa17.08■□□□□ 0.32
HMGN1-211ENST00000471260 FMR1Q06787 632 aaKnown RBP eCLIP17.08■□□□□ 0.32
HMGN1-211ENST00000471260 TBC1D10BQ4KMP7 808 aaPredicted RBP17.08■□□□□ 0.32
HMGN1-211ENST00000471260 HHIPL1Q96JK4 782 aa17.08■□□□□ 0.32
HMGN1-211ENST00000471260 CELF2O95319 508 aaKnown RBP17.07■□□□□ 0.32
HMGN1-211ENST00000471260 ZNF280AP59817 542 aaPredicted RBP17.07■□□□□ 0.32
HMGN1-211ENST00000471260 CCDC57Q2TAC2 916 aa17.07■□□□□ 0.32
HMGN1-211ENST00000471260 KIF4BQ2VIQ3 1234 aa17.07■□□□□ 0.32
HMGN1-211ENST00000471260 SLC4A10Q6U841 1118 aa17.07■□□□□ 0.32
HMGN1-211ENST00000471260 SAPCD2Q86UD0 394 aa17.07■□□□□ 0.32
HMGN1-211ENST00000471260 MRPL50Q8N5N7 158 aaKnown RBP17.07■□□□□ 0.32
HMGN1-211ENST00000471260 DCPSQ96C86 337 aaKnown RBP17.07■□□□□ 0.32
HMGN1-211ENST00000471260 GMLQ99445 158 aa17.07■□□□□ 0.32
HMGN1-211ENST00000471260 PSME4Q14997 1843 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms