RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 LPIN3Q9BQK8 851 aa10.02□□□□□ -0.81
SYNE1-218ENST00000468937 ELP3Q9H9T3 547 aa10.02□□□□□ -0.81
SYNE1-218ENST00000468937 ANO2Q9NQ90 1003 aa10.02□□□□□ -0.81
SYNE1-218ENST00000468937 ICMTO60725 284 aa10.01□□□□□ -0.81
SYNE1-218ENST00000468937 EHHADHQ08426 723 aa10.01□□□□□ -0.81
SYNE1-218ENST00000468937 SPACA7Q96KW9 195 aa10.01□□□□□ -0.81
SYNE1-218ENST00000468937 KRBA1A5PL33 1030 aa10□□□□□ -0.81
SYNE1-218ENST00000468937 HYAL2Q12891 473 aa10□□□□□ -0.81
SYNE1-218ENST00000468937 PLA2G4EQ3MJ16 856 aa10□□□□□ -0.81
SYNE1-218ENST00000468937 GLYCTKQ8IVS8 523 aa10□□□□□ -0.81
SYNE1-218ENST00000468937 SMG9Q9H0W8 520 aaKnown RBP10□□□□□ -0.81
SYNE1-218ENST00000468937 POLIQ9UNA4 740 aa10□□□□□ -0.81
SYNE1-218ENST00000468937 J3QW42 95 aa9.99□□□□□ -0.81
SYNE1-218ENST00000468937 SERPINB4P48594 390 aa9.99□□□□□ -0.81
SYNE1-218ENST00000468937 GPAT2Q6NUI2 795 aa9.99□□□□□ -0.81
SYNE1-218ENST00000468937 TXNDC2Q86VQ3 553 aa9.99□□□□□ -0.81
SYNE1-218ENST00000468937 PLD4Q96BZ4 506 aa9.99□□□□□ -0.81
SYNE1-218ENST00000468937 H3BRB1 525 aa9.98□□□□□ -0.81
SYNE1-218ENST00000468937 BRD1O95696 1058 aa9.98□□□□□ -0.81
SYNE1-218ENST00000468937 RAC1P63000 192 aa9.98□□□□□ -0.81
SYNE1-218ENST00000468937 MSL1Q68DK7 614 aa9.98□□□□□ -0.81
SYNE1-218ENST00000468937 PMEPA1Q969W9 287 aa9.98□□□□□ -0.81
SYNE1-218ENST00000468937 GGNBP2Q9H3C7 697 aa9.98□□□□□ -0.81
SYNE1-218ENST00000468937 TUT1Q9H6E5 874 aaKnown RBP9.98□□□□□ -0.81
SYNE1-218ENST00000468937 WFDC8Q8IUA0 241 aa9.97□□□□□ -0.81
SYNE1-218ENST00000468937 CACTIN-AS1Q8N1I8 211 aa9.97□□□□□ -0.81
SYNE1-218ENST00000468937 TMEM63CQ9P1W3 806 aa9.97□□□□□ -0.81
SYNE1-218ENST00000468937 MSTNO14793 375 aa9.96□□□□□ -0.82
SYNE1-218ENST00000468937 FZD6O60353 706 aa9.96□□□□□ -0.82
SYNE1-218ENST00000468937 APBA3O96018 575 aa9.96□□□□□ -0.82
SYNE1-218ENST00000468937 DTWD1Q8N5C7 304 aa9.96□□□□□ -0.82
SYNE1-218ENST00000468937 NACC1Q96RE7 527 aa9.96□□□□□ -0.82
SYNE1-218ENST00000468937 GRIK5Q16478 980 aa9.95□□□□□ -0.82
SYNE1-218ENST00000468937 NCAPG2Q86XI2 1143 aa9.95□□□□□ -0.82
SYNE1-218ENST00000468937 DMRTC2Q8IXT2 367 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-218ENST00000468937 BRPF3Q9ULD4 1205 aa9.95□□□□□ -0.82
SYNE1-218ENST00000468937 A0A0A0MRY4 1105 aa9.94□□□□□ -0.82
SYNE1-218ENST00000468937 KIF4AO95239 1232 aa9.94□□□□□ -0.82
SYNE1-218ENST00000468937 CES1P23141 567 aa9.94□□□□□ -0.82
SYNE1-218ENST00000468937 SMNDC1O75940 238 aaKnown RBP eCLIP9.93□□□□□ -0.82
SYNE1-218ENST00000468937 ELNP15502 786 aa9.93□□□□□ -0.82
SYNE1-218ENST00000468937 CCDC87Q9NVE4 849 aa9.93□□□□□ -0.82
SYNE1-218ENST00000468937 CNTN3Q9P232 1028 aa9.93□□□□□ -0.82
SYNE1-218ENST00000468937 A6NHS1 94 aa9.92□□□□□ -0.82
SYNE1-218ENST00000468937 C1QTNF9BB2RNN3 333 aa9.92□□□□□ -0.82
SYNE1-218ENST00000468937 FAM229AH3BQW9 127 aa9.92□□□□□ -0.82
SYNE1-218ENST00000468937 NDUFB5O43674 189 aa9.92□□□□□ -0.82
SYNE1-218ENST00000468937 CYP2E1P05181 493 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-218ENST00000468937 COL13A1Q5TAT6 717 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-218ENST00000468937 GDF6Q6KF10 455 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-218ENST00000468937 CD163Q86VB7 1156 aa9.92□□□□□ -0.82
SYNE1-218ENST00000468937 GJD3Q8N144 294 aa9.92□□□□□ -0.82
SYNE1-218ENST00000468937 C1orf127Q8N9H9 656 aa9.92□□□□□ -0.82
SYNE1-218ENST00000468937 SNX29Q8TEQ0 813 aa9.92□□□□□ -0.82
SYNE1-218ENST00000468937 GNEQ9Y223 722 aaKnown RBP9.92□□□□□ -0.82
SYNE1-218ENST00000468937 TNFRSF21O75509 655 aa9.91□□□□□ -0.82
SYNE1-218ENST00000468937 ILDR2Q71H61 639 aa9.91□□□□□ -0.82
SYNE1-218ENST00000468937 FMR1NBQ8N0W7 255 aaPredicted RBP9.91□□□□□ -0.82
SYNE1-218ENST00000468937 CITED4Q96RK1 184 aa9.91□□□□□ -0.82
SYNE1-218ENST00000468937 SPOCK3Q9BQ16 436 aa9.91□□□□□ -0.82
SYNE1-218ENST00000468937 MUC3BQ9H195 1237 aa9.91□□□□□ -0.82
SYNE1-218ENST00000468937 C9orf172C9J069 976 aa9.9□□□□□ -0.82
SYNE1-218ENST00000468937 PHACTR2O75167 634 aa9.9□□□□□ -0.82
SYNE1-218ENST00000468937 ITGB2P05107 769 aa9.9□□□□□ -0.82
SYNE1-218ENST00000468937 ARHGAP4P98171 946 aa9.9□□□□□ -0.82
SYNE1-218ENST00000468937 PDE3BQ13370 1112 aa9.9□□□□□ -0.82
SYNE1-218ENST00000468937 CEP135Q66GS9 1140 aa9.9□□□□□ -0.82
SYNE1-218ENST00000468937 IL22RA1Q8N6P7 574 aa9.9□□□□□ -0.82
SYNE1-218ENST00000468937 CEP120Q8N960 986 aa9.9□□□□□ -0.82
SYNE1-218ENST00000468937 DCAF11Q8TEB1 546 aa9.9□□□□□ -0.82
SYNE1-218ENST00000468937 KANSL3Q9P2N6 904 aa9.9□□□□□ -0.82
SYNE1-218ENST00000468937 SALL4Q9UJQ4 1053 aa9.9□□□□□ -0.82
SYNE1-218ENST00000468937 FAM177BA6PVY3 158 aa9.89□□□□□ -0.83
SYNE1-218ENST00000468937 NEFLP07196 543 aa9.89□□□□□ -0.83
SYNE1-218ENST00000468937 CHRNA4P43681 627 aa9.89□□□□□ -0.83
SYNE1-218ENST00000468937 ECM1Q16610 540 aa9.89□□□□□ -0.83
SYNE1-218ENST00000468937 PBX4Q9BYU1 374 aa9.89□□□□□ -0.83
SYNE1-218ENST00000468937 SRA1Q9HD15 236 aaKnown RBP9.89□□□□□ -0.83
SYNE1-218ENST00000468937 ATP11AP98196 1134 aa9.88□□□□□ -0.83
SYNE1-218ENST00000468937 GRIK4Q16099 956 aa9.88□□□□□ -0.83
SYNE1-218ENST00000468937 FBXO11Q86XK2 927 aa9.88□□□□□ -0.83
SYNE1-218ENST00000468937 MAP4K3Q8IVH8 894 aa9.88□□□□□ -0.83
SYNE1-218ENST00000468937 RASSF4Q9H2L5 321 aa9.88□□□□□ -0.83
SYNE1-218ENST00000468937 TRIM33Q9UPN9 1127 aa9.88□□□□□ -0.83
SYNE1-218ENST00000468937 SOWAHDA6NJG2 315 aa9.87□□□□□ -0.83
SYNE1-218ENST00000468937 EDN3P14138 238 aa9.87□□□□□ -0.83
SYNE1-218ENST00000468937 NRG1Q02297 640 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-218ENST00000468937 TRAIPQ9BWF2 469 aa9.87□□□□□ -0.83
SYNE1-218ENST00000468937 CHRDQ9H2X0 955 aa9.87□□□□□ -0.83
SYNE1-218ENST00000468937 PPME1Q9Y570 386 aa9.87□□□□□ -0.83
SYNE1-218ENST00000468937 PATL2C9JE40 543 aaKnown RBP9.86□□□□□ -0.83
SYNE1-218ENST00000468937 PROCP04070 461 aa9.86□□□□□ -0.83
SYNE1-218ENST00000468937 PTPRAP18433 802 aa9.86□□□□□ -0.83
SYNE1-218ENST00000468937 GATA4P43694 442 aa9.86□□□□□ -0.83
SYNE1-218ENST00000468937 BAG6P46379 1132 aa9.86□□□□□ -0.83
SYNE1-218ENST00000468937 KCNA1Q09470 495 aa9.86□□□□□ -0.83
SYNE1-218ENST00000468937 LENG1Q96BZ8 264 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-218ENST00000468937 AMOTL2Q9Y2J4 779 aa9.86□□□□□ -0.83
SYNE1-218ENST00000468937 CDC27P30260 824 aa9.85□□□□□ -0.83
SYNE1-218ENST00000468937 BIN2Q9UBW5 565 aaPredicted RBP9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms