RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 YDJCA8MPS7 323 aa24.3■■□□□ 1.48
COL7A1-207ENST00000467985 RIMBP2O15034 1052 aa24.3■■□□□ 1.48
COL7A1-207ENST00000467985 PLA2G12BQ9BX93 195 aa24.3■■□□□ 1.48
COL7A1-207ENST00000467985 XDHP47989 1333 aa24.3■■□□□ 1.48
COL7A1-207ENST00000467985 TMEM88BA6NKF7 163 aa24.29■■□□□ 1.48
COL7A1-207ENST00000467985 UFL1O94874 794 aa24.29■■□□□ 1.48
COL7A1-207ENST00000467985 GREM2Q9H772 168 aa24.29■■□□□ 1.48
COL7A1-207ENST00000467985 DBNDD1Q9H9R9 158 aa24.29■■□□□ 1.48
COL7A1-207ENST00000467985 BSDC1Q9NW68 430 aaPredicted RBP24.29■■□□□ 1.48
COL7A1-207ENST00000467985 ECE2O60344 883 aa24.28■■□□□ 1.48
COL7A1-207ENST00000467985 G3V3G9 751 aa24.27■■□□□ 1.48
COL7A1-207ENST00000467985 DCAF8Q5TAQ9 597 aa24.27■■□□□ 1.48
COL7A1-207ENST00000467985 DPF2Q92785 391 aa24.27■■□□□ 1.48
COL7A1-207ENST00000467985 E9PSI1 815 aa24.26■■□□□ 1.47
COL7A1-207ENST00000467985 H7C1D1 291 aa24.26■■□□□ 1.47
COL7A1-207ENST00000467985 ATP2B4P23634 1241 aa24.26■■□□□ 1.47
COL7A1-207ENST00000467985 RPS12P25398 132 aaKnown RBP24.26■■□□□ 1.47
COL7A1-207ENST00000467985 CASP7P55210 303 aa24.26■■□□□ 1.47
COL7A1-207ENST00000467985 DOK7Q18PE1 504 aa24.26■■□□□ 1.47
COL7A1-207ENST00000467985 CNOT7Q9UIV1 285 aaKnown RBP24.26■■□□□ 1.47
COL7A1-207ENST00000467985 PSMD14O00487 310 aa24.25■■□□□ 1.47
COL7A1-207ENST00000467985 IGHMBP2P38935 993 aaKnown RBP24.25■■□□□ 1.47
COL7A1-207ENST00000467985 BEND3Q5T5X7 828 aa24.25■■□□□ 1.47
COL7A1-207ENST00000467985 ZC3H15Q8WU90 426 aaKnown RBP24.25■■□□□ 1.47
COL7A1-207ENST00000467985 F6X3S4 739 aa24.24■■□□□ 1.47
COL7A1-207ENST00000467985 CCER2I3L3R5 266 aa24.24■■□□□ 1.47
COL7A1-207ENST00000467985 CSF1RP07333 972 aa24.24■■□□□ 1.47
COL7A1-207ENST00000467985 GPR101Q96P66 508 aaPredicted RBP24.24■■□□□ 1.47
COL7A1-207ENST00000467985 MINPP1Q9UNW1 487 aa24.24■■□□□ 1.47
COL7A1-207ENST00000467985 DIEXFQ68CQ4 756 aaKnown RBP24.23■■□□□ 1.47
COL7A1-207ENST00000467985 MKRN1Q9UHC7 482 aaKnown RBP24.23■■□□□ 1.47
COL7A1-207ENST00000467985 CNTNAP1P78357 1384 aa24.23■■□□□ 1.47
COL7A1-207ENST00000467985 ITGA6P23229 1130 aa24.22■■□□□ 1.47
COL7A1-207ENST00000467985 MICALL2Q8IY33 904 aa24.22■■□□□ 1.47
COL7A1-207ENST00000467985 PGAP2Q9UHJ9 254 aa24.22■■□□□ 1.47
COL7A1-207ENST00000467985 SPEF2Q9C093 1822 aa24.21■■□□□ 1.47
COL7A1-207ENST00000467985 ZBTB12Q9Y330 459 aaPredicted RBP24.21■■□□□ 1.47
COL7A1-207ENST00000467985 ALDH1L1O75891 902 aa24.2■■□□□ 1.46
COL7A1-207ENST00000467985 VIL1P09327 827 aaKnown RBP24.2■■□□□ 1.46
COL7A1-207ENST00000467985 FAM161AQ3B820 660 aa24.2■■□□□ 1.46
COL7A1-207ENST00000467985 MPHOSPH8Q99549 860 aa24.2■■□□□ 1.46
COL7A1-207ENST00000467985 ANKRD2Q9GZV1 360 aa24.2■■□□□ 1.46
COL7A1-207ENST00000467985 KCNQ5Q9NR82 932 aa24.2■■□□□ 1.46
COL7A1-207ENST00000467985 MED23Q9ULK4 1368 aa24.19■■□□□ 1.46
COL7A1-207ENST00000467985 CCT4P50991 539 aaKnown RBP24.19■■□□□ 1.46
COL7A1-207ENST00000467985 PODNQ7Z5L7 613 aa24.19■■□□□ 1.46
COL7A1-207ENST00000467985 LEMD3Q9Y2U8 911 aa24.19■■□□□ 1.46
COL7A1-207ENST00000467985 ANKRD18BA2A2Z9 1011 aa24.18■■□□□ 1.46
COL7A1-207ENST00000467985 GRM8O00222 908 aa24.18■■□□□ 1.46
COL7A1-207ENST00000467985 HIRAP54198 1017 aaPredicted RBP24.18■■□□□ 1.46
COL7A1-207ENST00000467985 SLFN5Q08AF3 891 aa24.18■■□□□ 1.46
COL7A1-207ENST00000467985 TRPM4Q8TD43 1214 aa24.18■■□□□ 1.46
COL7A1-207ENST00000467985 SRCIN1Q9C0H9 1055 aa24.18■■□□□ 1.46
COL7A1-207ENST00000467985 C9orf78Q9NZ63 289 aaPredicted RBP24.18■■□□□ 1.46
COL7A1-207ENST00000467985 SCN9AQ15858 1988 aa24.18■■□□□ 1.46
COL7A1-207ENST00000467985 ZNF609O15014 1411 aa24.18■■□□□ 1.46
COL7A1-207ENST00000467985 TRPM7Q96QT4 1865 aa24.17■■□□□ 1.46
COL7A1-207ENST00000467985 RASSF10A6NK89 507 aa24.17■■□□□ 1.46
COL7A1-207ENST00000467985 IFIT5Q13325 482 aaKnown RBP24.17■■□□□ 1.46
COL7A1-207ENST00000467985 SLC4A10Q6U841 1118 aa24.17■■□□□ 1.46
COL7A1-207ENST00000467985 ABT1Q9ULW3 272 aaKnown RBP24.17■■□□□ 1.46
COL7A1-207ENST00000467985 PTPRCP08575 1304 aa24.16■■□□□ 1.46
COL7A1-207ENST00000467985 FOXO4P98177 505 aa24.16■■□□□ 1.46
COL7A1-207ENST00000467985 DEFB115Q30KQ5 88 aa24.16■■□□□ 1.46
COL7A1-207ENST00000467985 AGBL3Q8NEM8 1001 aa24.16■■□□□ 1.46
COL7A1-207ENST00000467985 PSME4Q14997 1843 aa24.15■■□□□ 1.46
COL7A1-207ENST00000467985 SHTN1A0MZ66 631 aa24.15■■□□□ 1.46
COL7A1-207ENST00000467985 TRAF5O00463 557 aa24.15■■□□□ 1.46
COL7A1-207ENST00000467985 RSBN1LQ6PCB5 846 aaPredicted RBP24.15■■□□□ 1.46
COL7A1-207ENST00000467985 CDC37L1Q7L3B6 337 aa24.15■■□□□ 1.46
COL7A1-207ENST00000467985 MRPL50Q8N5N7 158 aaKnown RBP24.15■■□□□ 1.46
COL7A1-207ENST00000467985 USP17L3A6NCW0 530 aa24.14■■□□□ 1.45
COL7A1-207ENST00000467985 USP17L4A6NCW7 530 aa24.14■■□□□ 1.45
COL7A1-207ENST00000467985 VEGFBP49765 207 aa24.14■■□□□ 1.45
COL7A1-207ENST00000467985 TBC1D10BQ4KMP7 808 aaPredicted RBP24.14■■□□□ 1.45
COL7A1-207ENST00000467985 USP17L1Q7RTZ2 530 aa24.14■■□□□ 1.45
COL7A1-207ENST00000467985 SAMD7Q7Z3H4 446 aa24.14■■□□□ 1.45
COL7A1-207ENST00000467985 CHMP3Q9Y3E7 222 aa24.14■■□□□ 1.45
COL7A1-207ENST00000467985 ZNF804BA4D1E1 1349 aa24.13■■□□□ 1.45
COL7A1-207ENST00000467985 HSPA1AP0DMV8 641 aaKnown RBP24.13■■□□□ 1.45
COL7A1-207ENST00000467985 HSPA1BP0DMV9 641 aaKnown RBP24.13■■□□□ 1.45
COL7A1-207ENST00000467985 CST9Q5W186 159 aa24.13■■□□□ 1.45
COL7A1-207ENST00000467985 LMBR1LQ6UX01 489 aa24.13■■□□□ 1.45
COL7A1-207ENST00000467985 GLIS2Q9BZE0 524 aaPredicted RBP24.13■■□□□ 1.45
COL7A1-207ENST00000467985 COA1Q9GZY4 146 aa24.13■■□□□ 1.45
COL7A1-207ENST00000467985 WTIPA6NIX2 430 aaPredicted RBP24.12■■□□□ 1.45
COL7A1-207ENST00000467985 KCNJ4P48050 445 aa24.12■■□□□ 1.45
COL7A1-207ENST00000467985 FMR1Q06787 632 aaKnown RBP eCLIP24.12■■□□□ 1.45
COL7A1-207ENST00000467985 CCDC57Q2TAC2 916 aa24.12■■□□□ 1.45
COL7A1-207ENST00000467985 ALDH1L2Q3SY69 923 aa24.12■■□□□ 1.45
COL7A1-207ENST00000467985 CHRNDQ07001 517 aa24.11■■□□□ 1.45
COL7A1-207ENST00000467985 KIF4BQ2VIQ3 1234 aa24.11■■□□□ 1.45
COL7A1-207ENST00000467985 SSH1Q8WYL5 1049 aa24.11■■□□□ 1.45
COL7A1-207ENST00000467985 CELF2O95319 508 aaKnown RBP24.1■■□□□ 1.45
COL7A1-207ENST00000467985 CT47B1P0C2W7 299 aaPredicted RBP24.1■■□□□ 1.45
COL7A1-207ENST00000467985 ZNF280AP59817 542 aaPredicted RBP24.1■■□□□ 1.45
COL7A1-207ENST00000467985 TRMT2AQ8IZ69 625 aaKnown RBP24.1■■□□□ 1.45
COL7A1-207ENST00000467985 CDCA7LQ96GN5 454 aa24.1■■□□□ 1.45
COL7A1-207ENST00000467985 TLL2Q9Y6L7 1015 aa24.1■■□□□ 1.45
COL7A1-207ENST00000467985 EGFRP00533 1210 aa24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms