RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 EFCAB6Q5THR3 1501 aa9.98□□□□□ -0.81
HPS4-209ENST00000466781 TSPY3P0CV98 308 aa9.98□□□□□ -0.81
HPS4-209ENST00000466781 TSPY8P0CW00 308 aa9.98□□□□□ -0.81
HPS4-209ENST00000466781 TRAPPC3LQ5T215 181 aa9.98□□□□□ -0.81
HPS4-209ENST00000466781 EVI5LQ96CN4 794 aa9.98□□□□□ -0.81
HPS4-209ENST00000466781 ORAI2Q96SN7 254 aa9.98□□□□□ -0.81
HPS4-209ENST00000466781 ZFYVE9O95405 1425 aa9.98□□□□□ -0.81
HPS4-209ENST00000466781 EIF4A2Q14240 407 aaKnown RBP9.98□□□□□ -0.81
HPS4-209ENST00000466781 IFI16Q16666 785 aaKnown RBP9.98□□□□□ -0.81
HPS4-209ENST00000466781 DDX12PQ92771 950 aa9.98□□□□□ -0.81
HPS4-209ENST00000466781 GOLIM4O00461 696 aa9.98□□□□□ -0.81
HPS4-209ENST00000466781 PHACTR2O75167 634 aa9.98□□□□□ -0.81
HPS4-209ENST00000466781 LDHAL6AQ6ZMR3 332 aa9.98□□□□□ -0.81
HPS4-209ENST00000466781 OTUD6BQ8N6M0 293 aa9.98□□□□□ -0.81
HPS4-209ENST00000466781 PPP1R14CQ8TAE6 165 aa9.98□□□□□ -0.81
HPS4-209ENST00000466781 TTC12Q9H892 705 aaPredicted RBP9.98□□□□□ -0.81
HPS4-209ENST00000466781 B4DLN1 442 aa9.98□□□□□ -0.81
HPS4-209ENST00000466781 METAP2P50579 478 aaKnown RBP eCLIP9.98□□□□□ -0.81
HPS4-209ENST00000466781 MRPL12P52815 198 aaKnown RBP9.98□□□□□ -0.81
HPS4-209ENST00000466781 NCBP1Q09161 790 aaKnown RBP9.98□□□□□ -0.81
HPS4-209ENST00000466781 HLTFQ14527 1009 aaKnown RBP eCLIP9.98□□□□□ -0.81
HPS4-209ENST00000466781 MICALCLQ6ZW33 695 aa9.98□□□□□ -0.81
HPS4-209ENST00000466781 DZIP3Q86Y13 1208 aaKnown RBP9.98□□□□□ -0.81
HPS4-209ENST00000466781 NIP7Q9Y221 180 aaKnown RBP eCLIP9.98□□□□□ -0.81
HPS4-209ENST00000466781 IARSP41252 1262 aaKnown RBP9.97□□□□□ -0.81
HPS4-209ENST00000466781 BAG6P46379 1132 aa9.97□□□□□ -0.81
HPS4-209ENST00000466781 DDX17Q92841 729 aaKnown RBP9.97□□□□□ -0.81
HPS4-209ENST00000466781 TMX1Q9H3N1 280 aa9.97□□□□□ -0.81
HPS4-209ENST00000466781 CLIP2Q9UDT6 1046 aa9.97□□□□□ -0.81
HPS4-209ENST00000466781 CFAP65Q6ZU64 1925 aaKnown RBP9.97□□□□□ -0.81
HPS4-209ENST00000466781 URI1O94763 535 aaPredicted RBP9.97□□□□□ -0.81
HPS4-209ENST00000466781 UQCRFS1P1P0C7P4 283 aa9.97□□□□□ -0.81
HPS4-209ENST00000466781 ARL1P40616 181 aaPredicted RBP9.97□□□□□ -0.81
HPS4-209ENST00000466781 RGS22Q8NE09 1264 aa9.97□□□□□ -0.81
HPS4-209ENST00000466781 CCNL1Q9UK58 526 aaPredicted RBP9.97□□□□□ -0.81
HPS4-209ENST00000466781 NKTRP30414 1462 aaKnown RBP9.97□□□□□ -0.81
HPS4-209ENST00000466781 KDM5CP41229 1560 aa9.97□□□□□ -0.81
HPS4-209ENST00000466781 RARSP54136 660 aaKnown RBP9.97□□□□□ -0.81
HPS4-209ENST00000466781 SPECC1Q5M775 1068 aa9.97□□□□□ -0.81
HPS4-209ENST00000466781 FSIP1Q8NA03 581 aa9.97□□□□□ -0.81
HPS4-209ENST00000466781 PUS7Q96PZ0 661 aaKnown RBP9.97□□□□□ -0.81
HPS4-209ENST00000466781 ERICH4A6NGS2 130 aa9.97□□□□□ -0.81
HPS4-209ENST00000466781 KANK3Q6NY19 840 aa9.97□□□□□ -0.81
HPS4-209ENST00000466781 OGFOD1Q8N543 542 aa9.96□□□□□ -0.81
HPS4-209ENST00000466781 RAB3IL1Q8TBN0 382 aa9.96□□□□□ -0.81
HPS4-209ENST00000466781 RBM17Q96I25 401 aaKnown RBP9.96□□□□□ -0.81
HPS4-209ENST00000466781 SLC26A6Q9BXS9 759 aa9.96□□□□□ -0.81
HPS4-209ENST00000466781 CCDC175P0C221 793 aa9.96□□□□□ -0.81
HPS4-209ENST00000466781 UBA7P41226 1012 aa9.96□□□□□ -0.81
HPS4-209ENST00000466781 PLS1Q14651 629 aa9.96□□□□□ -0.81
HPS4-209ENST00000466781 NCOA7Q8NI08 942 aa9.96□□□□□ -0.81
HPS4-209ENST00000466781 DCAF5Q96JK2 942 aa9.96□□□□□ -0.81
HPS4-209ENST00000466781 MAP3K5Q99683 1374 aa9.96□□□□□ -0.81
HPS4-209ENST00000466781 GNPATO15228 680 aa9.96□□□□□ -0.81
HPS4-209ENST00000466781 KRT13P13646 458 aa9.96□□□□□ -0.81
HPS4-209ENST00000466781 FLIIQ13045 1269 aa9.96□□□□□ -0.81
HPS4-209ENST00000466781 NLRP3Q96P20 1036 aa9.96□□□□□ -0.81
HPS4-209ENST00000466781 RMND1Q9NWS8 449 aa9.96□□□□□ -0.81
HPS4-209ENST00000466781 POTEB2H3BUK9 544 aa9.96□□□□□ -0.82
HPS4-209ENST00000466781 APBA3O96018 575 aa9.96□□□□□ -0.82
HPS4-209ENST00000466781 ZNF772Q68DY9 489 aaPredicted RBP9.96□□□□□ -0.82
HPS4-209ENST00000466781 USP16Q9Y5T5 823 aa9.96□□□□□ -0.82
HPS4-209ENST00000466781 SHROOM2Q13796 1616 aa9.96□□□□□ -0.82
HPS4-209ENST00000466781 RNF187Q5TA31 235 aaPredicted RBP9.95□□□□□ -0.82
HPS4-209ENST00000466781 C6orf163Q5TEZ5 329 aa9.95□□□□□ -0.82
HPS4-209ENST00000466781 ANKRD13DQ6ZTN6 518 aa9.95□□□□□ -0.82
HPS4-209ENST00000466781 KIF18AQ8NI77 898 aa9.95□□□□□ -0.82
HPS4-209ENST00000466781 F8W031 263 aaPredicted RBP9.95□□□□□ -0.82
HPS4-209ENST00000466781 TAF12Q16514 161 aa9.95□□□□□ -0.82
HPS4-209ENST00000466781 TSHZ3Q63HK5 1081 aa9.95□□□□□ -0.82
HPS4-209ENST00000466781 ZNF804AQ7Z570 1209 aa9.95□□□□□ -0.82
HPS4-209ENST00000466781 BBXQ8WY36 941 aaPredicted RBP9.95□□□□□ -0.82
HPS4-209ENST00000466781 CHPF2Q9P2E5 772 aa9.95□□□□□ -0.82
HPS4-209ENST00000466781 STX1AQ16623 288 aa9.95□□□□□ -0.82
HPS4-209ENST00000466781 ARHGEF12Q9NZN5 1544 aa9.95□□□□□ -0.82
HPS4-209ENST00000466781 PICALMQ13492 652 aa9.95□□□□□ -0.82
HPS4-209ENST00000466781 PLVAPQ9BX97 442 aa9.95□□□□□ -0.82
HPS4-209ENST00000466781 LIMCH1Q9UPQ0 1083 aa9.95□□□□□ -0.82
HPS4-209ENST00000466781 A0A1W2PP64 1363 aa9.95□□□□□ -0.82
HPS4-209ENST00000466781 PLEKHG1Q9ULL1 1385 aa9.95□□□□□ -0.82
HPS4-209ENST00000466781 KIF4AO95239 1232 aa9.95□□□□□ -0.82
HPS4-209ENST00000466781 MAATS1Q7Z4T9 603 aa9.95□□□□□ -0.82
HPS4-209ENST00000466781 MICU3Q86XE3 530 aa9.95□□□□□ -0.82
HPS4-209ENST00000466781 PIK3C2GO75747 1445 aa9.95□□□□□ -0.82
HPS4-209ENST00000466781 LMOD1P29536 600 aaPredicted RBP9.94□□□□□ -0.82
HPS4-209ENST00000466781 TPTE2Q6XPS3 522 aa9.94□□□□□ -0.82
HPS4-209ENST00000466781 PDCL2Q8N4E4 241 aa9.94□□□□□ -0.82
HPS4-209ENST00000466781 KRT23Q9C075 422 aa9.94□□□□□ -0.82
HPS4-209ENST00000466781 EDC4Q6P2E9 1401 aaKnown RBP9.94□□□□□ -0.82
HPS4-209ENST00000466781 IFIT1BQ5T764 474 aaKnown RBP9.94□□□□□ -0.82
HPS4-209ENST00000466781 SPATA24Q86W54 205 aa9.94□□□□□ -0.82
HPS4-209ENST00000466781 NFATC2IPQ8NCF5 419 aa9.94□□□□□ -0.82
HPS4-209ENST00000466781 SMARCC2Q8TAQ2 1214 aa9.94□□□□□ -0.82
HPS4-209ENST00000466781 TRIM47Q96LD4 638 aa9.94□□□□□ -0.82
HPS4-209ENST00000466781 IMPG2Q9BZV3 1241 aa9.94□□□□□ -0.82
HPS4-209ENST00000466781 LARP6Q9BRS8 491 aaKnown RBP9.94□□□□□ -0.82
HPS4-209ENST00000466781 WTAPQ15007 396 aa9.94□□□□□ -0.82
HPS4-209ENST00000466781 XAGE3Q8WTP9 111 aa9.94□□□□□ -0.82
HPS4-209ENST00000466781 PZPP20742 1482 aa9.94□□□□□ -0.82
HPS4-209ENST00000466781 NLRP1Q9C000 1473 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms