RNA–Protein interactions for RNA: ENST00000466732.2

VPS13D-203, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 377 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-203ENST00000466732 CCDC87Q9NVE4 849 aa7.48□□□□□ -1.21
VPS13D-203ENST00000466732 ABI2Q9NYB9 513 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-203ENST00000466732 FRRS1LQ9P0K9 344 aa7.48□□□□□ -1.21
VPS13D-203ENST00000466732 EIF2AK2P19525 551 aaKnown RBP7.47□□□□□ -1.21
VPS13D-203ENST00000466732 AFF1P51825 1210 aaKnown RBP7.47□□□□□ -1.21
VPS13D-203ENST00000466732 ALYREFQ86V81 257 aaKnown RBP7.47□□□□□ -1.21
VPS13D-203ENST00000466732 KCTD17Q8N5Z5 321 aa7.47□□□□□ -1.21
VPS13D-203ENST00000466732 TTC16Q8NEE8 873 aa7.47□□□□□ -1.21
VPS13D-203ENST00000466732 COL13A1Q5TAT6 717 aaPredicted RBP7.46□□□□□ -1.22
VPS13D-203ENST00000466732 SMG9Q9H0W8 520 aaKnown RBP7.46□□□□□ -1.22
VPS13D-203ENST00000466732 KRBA1A5PL33 1030 aa7.45□□□□□ -1.22
VPS13D-203ENST00000466732 SPDYE3A6NKU9 549 aa7.45□□□□□ -1.22
VPS13D-203ENST00000466732 GHRHP01286 108 aa7.45□□□□□ -1.22
VPS13D-203ENST00000466732 CYP2E1P05181 493 aaPredicted RBP7.45□□□□□ -1.22
VPS13D-203ENST00000466732 USP5P45974 858 aa7.45□□□□□ -1.22
VPS13D-203ENST00000466732 ARHGAP4P98171 946 aa7.45□□□□□ -1.22
VPS13D-203ENST00000466732 HYAL2Q12891 473 aa7.45□□□□□ -1.22
VPS13D-203ENST00000466732 GRIK5Q16478 980 aa7.45□□□□□ -1.22
VPS13D-203ENST00000466732 TTC9Q92623 222 aa7.45□□□□□ -1.22
VPS13D-203ENST00000466732 CNTN3Q9P232 1028 aa7.45□□□□□ -1.22
VPS13D-203ENST00000466732 PLA2G4EQ3MJ16 856 aa7.44□□□□□ -1.22
VPS13D-203ENST00000466732 TRAPPC3LQ5T215 181 aa7.44□□□□□ -1.22
VPS13D-203ENST00000466732 GJD3Q8N144 294 aa7.44□□□□□ -1.22
VPS13D-203ENST00000466732 PLD4Q96BZ4 506 aa7.44□□□□□ -1.22
VPS13D-203ENST00000466732 RBSNQ9H1K0 784 aa7.44□□□□□ -1.22
VPS13D-203ENST00000466732 GNEQ9Y223 722 aaKnown RBP7.44□□□□□ -1.22
VPS13D-203ENST00000466732 FAM229AH3BQW9 127 aa7.43□□□□□ -1.22
VPS13D-203ENST00000466732 KIF4AO95239 1232 aa7.43□□□□□ -1.22
VPS13D-203ENST00000466732 EHHADHQ08426 723 aa7.43□□□□□ -1.22
VPS13D-203ENST00000466732 C1orf127Q8N9H9 656 aa7.43□□□□□ -1.22
VPS13D-203ENST00000466732 TRAIPQ9BWF2 469 aa7.43□□□□□ -1.22
VPS13D-203ENST00000466732 KANSL3Q9P2N6 904 aa7.43□□□□□ -1.22
VPS13D-203ENST00000466732 BRPF3Q9ULD4 1205 aa7.43□□□□□ -1.22
VPS13D-203ENST00000466732 SOWAHDA6NJG2 315 aa7.42□□□□□ -1.22
VPS13D-203ENST00000466732 ITGB2P05107 769 aa7.42□□□□□ -1.22
VPS13D-203ENST00000466732 SPATA31C1P0DKV0 1188 aa7.42□□□□□ -1.22
VPS13D-203ENST00000466732 TRIM28Q13263 835 aaKnown RBP7.42□□□□□ -1.22
VPS13D-203ENST00000466732 PRRT3Q5FWE3 981 aa7.42□□□□□ -1.22
VPS13D-203ENST00000466732 MSL1Q68DK7 614 aa7.42□□□□□ -1.22
VPS13D-203ENST00000466732 ILDR2Q71H61 639 aa7.42□□□□□ -1.22
VPS13D-203ENST00000466732 DMRTC2Q8IXT2 367 aaPredicted RBP7.42□□□□□ -1.22
VPS13D-203ENST00000466732 SPACA7Q96KW9 195 aa7.42□□□□□ -1.22
VPS13D-203ENST00000466732 CHRDQ9H2X0 955 aa7.42□□□□□ -1.22
VPS13D-203ENST00000466732 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.42□□□□□ -1.22
VPS13D-203ENST00000466732 A0A0A0MRY4 1105 aa7.41□□□□□ -1.22
VPS13D-203ENST00000466732 TNFRSF21O75509 655 aa7.41□□□□□ -1.22
VPS13D-203ENST00000466732 CES1P23141 567 aa7.41□□□□□ -1.22
VPS13D-203ENST00000466732 NCAPG2Q86XI2 1143 aa7.41□□□□□ -1.22
VPS13D-203ENST00000466732 SALL4Q9UJQ4 1053 aa7.41□□□□□ -1.22
VPS13D-203ENST00000466732 ATP11AP98196 1134 aa7.4□□□□□ -1.22
VPS13D-203ENST00000466732 GDF6Q6KF10 455 aaPredicted RBP7.4□□□□□ -1.22
VPS13D-203ENST00000466732 GPAT2Q6NUI2 795 aa7.4□□□□□ -1.22
VPS13D-203ENST00000466732 WFDC8Q8IUA0 241 aa7.4□□□□□ -1.22
VPS13D-203ENST00000466732 CEP120Q8N960 986 aa7.4□□□□□ -1.22
VPS13D-203ENST00000466732 SNX29Q8TEQ0 813 aa7.4□□□□□ -1.22
VPS13D-203ENST00000466732 PMEPA1Q969W9 287 aa7.4□□□□□ -1.22
VPS13D-203ENST00000466732 FOXD3Q9UJU5 478 aaPredicted RBP7.4□□□□□ -1.22
VPS13D-203ENST00000466732 TRIM33Q9UPN9 1127 aa7.4□□□□□ -1.22
VPS13D-203ENST00000466732 NDUFB5O43674 189 aa7.39□□□□□ -1.23
VPS13D-203ENST00000466732 PHACTR2O75167 634 aa7.39□□□□□ -1.23
VPS13D-203ENST00000466732 BAG6P46379 1132 aa7.39□□□□□ -1.23
VPS13D-203ENST00000466732 KCNA1Q09470 495 aa7.39□□□□□ -1.23
VPS13D-203ENST00000466732 RASSF4Q9H2L5 321 aa7.39□□□□□ -1.23
VPS13D-203ENST00000466732 IVNS1ABPQ9Y6Y0 642 aa7.39□□□□□ -1.23
VPS13D-203ENST00000466732 C1QTNF9BB2RNN3 333 aa7.38□□□□□ -1.23
VPS13D-203ENST00000466732 EREGO14944 169 aa7.38□□□□□ -1.23
VPS13D-203ENST00000466732 CHRNA4P43681 627 aa7.38□□□□□ -1.23
VPS13D-203ENST00000466732 RAC1P63000 192 aa7.38□□□□□ -1.23
VPS13D-203ENST00000466732 GRIK4Q16099 956 aa7.38□□□□□ -1.23
VPS13D-203ENST00000466732 CEP135Q66GS9 1140 aa7.38□□□□□ -1.23
VPS13D-203ENST00000466732 CD163Q86VB7 1156 aa7.38□□□□□ -1.23
VPS13D-203ENST00000466732 IL22RA1Q8N6P7 574 aa7.38□□□□□ -1.23
VPS13D-203ENST00000466732 PBX4Q9BYU1 374 aa7.38□□□□□ -1.23
VPS13D-203ENST00000466732 SMNDC1O75940 238 aaKnown RBP eCLIP7.37□□□□□ -1.23
VPS13D-203ENST00000466732 IGHA1P01876 353 aa7.37□□□□□ -1.23
VPS13D-203ENST00000466732 ACPPP15309 386 aa7.37□□□□□ -1.23
VPS13D-203ENST00000466732 FMR1NBQ8N0W7 255 aaPredicted RBP7.37□□□□□ -1.23
VPS13D-203ENST00000466732 CITED4Q96RK1 184 aa7.37□□□□□ -1.23
VPS13D-203ENST00000466732 FAM129BQ96TA1 746 aa7.37□□□□□ -1.23
VPS13D-203ENST00000466732 ZFYVE28Q9HCC9 887 aa7.37□□□□□ -1.23
VPS13D-203ENST00000466732 BIN2Q9UBW5 565 aaPredicted RBP7.37□□□□□ -1.23
VPS13D-203ENST00000466732 APBA3O96018 575 aa7.36□□□□□ -1.23
VPS13D-203ENST00000466732 ELNP15502 786 aa7.36□□□□□ -1.23
VPS13D-203ENST00000466732 PDE3BQ13370 1112 aa7.36□□□□□ -1.23
VPS13D-203ENST00000466732 ADAMTSL4Q6UY14 1074 aa7.36□□□□□ -1.23
VPS13D-203ENST00000466732 CACTIN-AS1Q8N1I8 211 aa7.36□□□□□ -1.23
VPS13D-203ENST00000466732 DTWD1Q8N5C7 304 aa7.36□□□□□ -1.23
VPS13D-203ENST00000466732 SPOCK3Q9BQ16 436 aa7.36□□□□□ -1.23
VPS13D-203ENST00000466732 LACRTQ9GZZ8 138 aa7.36□□□□□ -1.23
VPS13D-203ENST00000466732 AMOTL2Q9Y2J4 779 aa7.36□□□□□ -1.23
VPS13D-203ENST00000466732 NFKBIEO00221 500 aa7.35□□□□□ -1.23
VPS13D-203ENST00000466732 MSTNO14793 375 aa7.35□□□□□ -1.23
VPS13D-203ENST00000466732 TRPA1O75762 1119 aa7.35□□□□□ -1.23
VPS13D-203ENST00000466732 PROCP04070 461 aa7.35□□□□□ -1.23
VPS13D-203ENST00000466732 FBXO11Q86XK2 927 aa7.35□□□□□ -1.23
VPS13D-203ENST00000466732 POP1Q99575 1024 aaKnown RBP7.35□□□□□ -1.23
VPS13D-203ENST00000466732 DZANK1Q9NVP4 752 aa7.35□□□□□ -1.23
VPS13D-203ENST00000466732 DEAF1O75398 565 aaPredicted RBP7.34□□□□□ -1.23
VPS13D-203ENST00000466732 IGHA2P01877 340 aa7.34□□□□□ -1.23
VPS13D-203ENST00000466732 PDIA4P13667 645 aaKnown RBP7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms