RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 SAPCD2Q86UD0 394 aa26.66■■□□□ 1.86
COL6A1-203ENST00000466285 TSKSQ9UJT2 592 aa26.66■■□□□ 1.86
COL6A1-203ENST00000466285 WTIPA6NIX2 430 aaPredicted RBP26.65■■□□□ 1.86
COL6A1-203ENST00000466285 RPS8P62241 208 aaKnown RBP26.65■■□□□ 1.86
COL6A1-203ENST00000466285 TBC1D10BQ4KMP7 808 aaPredicted RBP26.65■■□□□ 1.86
COL6A1-203ENST00000466285 PCCAP05165 728 aaPredicted RBP26.64■■□□□ 1.86
COL6A1-203ENST00000466285 METTL22Q9BUU2 404 aaPredicted RBP26.64■■□□□ 1.86
COL6A1-203ENST00000466285 MAP3K2Q9Y2U5 619 aa26.64■■□□□ 1.86
COL6A1-203ENST00000466285 ASTN2O75129 1339 aaPredicted RBP26.64■■□□□ 1.85
COL6A1-203ENST00000466285 IGKV5-2P06315 115 aa26.63■■□□□ 1.85
COL6A1-203ENST00000466285 G2E3Q7L622 706 aa26.63■■□□□ 1.85
COL6A1-203ENST00000466285 UFL1O94874 794 aa26.62■■□□□ 1.85
COL6A1-203ENST00000466285 USP48Q86UV5 1035 aa26.62■■□□□ 1.85
COL6A1-203ENST00000466285 CCDC191Q8NCU4 936 aa26.62■■□□□ 1.85
COL6A1-203ENST00000466285 CWC25Q9NXE8 425 aaPredicted RBP26.62■■□□□ 1.85
COL6A1-203ENST00000466285 ADM5C9JUS6 153 aa26.61■■□□□ 1.85
COL6A1-203ENST00000466285 MAP2K1Q02750 393 aaPredicted RBP26.61■■□□□ 1.85
COL6A1-203ENST00000466285 CALD1Q05682 793 aaKnown RBP26.61■■□□□ 1.85
COL6A1-203ENST00000466285 ZIC5Q96T25 663 aa26.61■■□□□ 1.85
COL6A1-203ENST00000466285 PODXL2Q9NZ53 605 aa26.61■■□□□ 1.85
COL6A1-203ENST00000466285 ZC3H15Q8WU90 426 aaKnown RBP26.6■■□□□ 1.85
COL6A1-203ENST00000466285 DPF2Q92785 391 aa26.6■■□□□ 1.85
COL6A1-203ENST00000466285 A0A1B0GUL6 1792 aa26.59■■□□□ 1.85
COL6A1-203ENST00000466285 H7C1D1 291 aa26.59■■□□□ 1.85
COL6A1-203ENST00000466285 PDE8AO60658 829 aa26.59■■□□□ 1.85
COL6A1-203ENST00000466285 ECE1P42892 770 aa26.59■■□□□ 1.85
COL6A1-203ENST00000466285 CWF19L2Q2TBE0 894 aaKnown RBP26.59■■□□□ 1.85
COL6A1-203ENST00000466285 RBM26Q5T8P6 1007 aaKnown RBP26.59■■□□□ 1.85
COL6A1-203ENST00000466285 PI4KAP2A4QPH2 592 aa26.58■■□□□ 1.85
COL6A1-203ENST00000466285 CCDC30Q5VVM6 783 aa26.58■■□□□ 1.85
COL6A1-203ENST00000466285 CDC37L1Q7L3B6 337 aa26.58■■□□□ 1.85
COL6A1-203ENST00000466285 PI4KAP1Q8N8J0 262 aa26.58■■□□□ 1.85
COL6A1-203ENST00000466285 CASP8AP2Q9UKL3 1982 aa26.57■■□□□ 1.84
COL6A1-203ENST00000466285 CCDC152Q4G0S7 254 aa26.57■■□□□ 1.84
COL6A1-203ENST00000466285 EYA3Q99504 573 aa26.57■■□□□ 1.84
COL6A1-203ENST00000466285 ANKIB1Q9P2G1 1089 aa26.57■■□□□ 1.84
COL6A1-203ENST00000466285 CTSWP56202 376 aa26.56■■□□□ 1.84
COL6A1-203ENST00000466285 WWC1Q8IX03 1113 aa26.56■■□□□ 1.84
COL6A1-203ENST00000466285 GGA1Q9UJY5 639 aa26.56■■□□□ 1.84
COL6A1-203ENST00000466285 KIF4BQ2VIQ3 1234 aa26.55■■□□□ 1.84
COL6A1-203ENST00000466285 KSR2Q6VAB6 950 aa26.55■■□□□ 1.84
COL6A1-203ENST00000466285 GREM2Q9H772 168 aa26.55■■□□□ 1.84
COL6A1-203ENST00000466285 VIL1P09327 827 aaKnown RBP26.54■■□□□ 1.84
COL6A1-203ENST00000466285 RPS12P25398 132 aaKnown RBP26.54■■□□□ 1.84
COL6A1-203ENST00000466285 KRT26Q7Z3Y9 468 aa26.54■■□□□ 1.84
COL6A1-203ENST00000466285 GGA3Q9NZ52 723 aa26.54■■□□□ 1.84
COL6A1-203ENST00000466285 ZNF609O15014 1411 aa26.54■■□□□ 1.84
COL6A1-203ENST00000466285 DDX58O95786 925 aaKnown RBP26.53■■□□□ 1.84
COL6A1-203ENST00000466285 TTLL11Q8NHH1 800 aa26.53■■□□□ 1.84
COL6A1-203ENST00000466285 ZC3H12CQ9C0D7 883 aaKnown RBP26.53■■□□□ 1.84
COL6A1-203ENST00000466285 NEURL1BA8MQ27 555 aa26.52■■□□□ 1.84
COL6A1-203ENST00000466285 XDHP47989 1333 aa26.52■■□□□ 1.84
COL6A1-203ENST00000466285 TWISTNBQ3B726 338 aaPredicted RBP26.52■■□□□ 1.84
COL6A1-203ENST00000466285 ANKRD18AQ8IVF6 992 aa26.52■■□□□ 1.84
COL6A1-203ENST00000466285 SCAF8Q9UPN6 1271 aaKnown RBP26.52■■□□□ 1.84
COL6A1-203ENST00000466285 FANCIQ9NVI1 1328 aa26.51■■□□□ 1.83
COL6A1-203ENST00000466285 HUNKP57058 714 aa26.51■■□□□ 1.83
COL6A1-203ENST00000466285 CCDC27Q2M243 656 aa26.51■■□□□ 1.83
COL6A1-203ENST00000466285 ABHD8Q96I13 439 aa26.51■■□□□ 1.83
COL6A1-203ENST00000466285 HHIPL1Q96JK4 782 aa26.51■■□□□ 1.83
COL6A1-203ENST00000466285 MXD3Q9BW11 206 aa26.51■■□□□ 1.83
COL6A1-203ENST00000466285 MAP2K2P36507 400 aa26.5■■□□□ 1.83
COL6A1-203ENST00000466285 UBE3BQ7Z3V4 1068 aa26.5■■□□□ 1.83
COL6A1-203ENST00000466285 GMLQ99445 158 aa26.5■■□□□ 1.83
COL6A1-203ENST00000466285 FAM155AB1AL88 458 aaPredicted RBP26.49■■□□□ 1.83
COL6A1-203ENST00000466285 KLRK1P26718 216 aa26.49■■□□□ 1.83
COL6A1-203ENST00000466285 RSBN1LQ6PCB5 846 aaPredicted RBP26.49■■□□□ 1.83
COL6A1-203ENST00000466285 CACNA1FO60840 1977 aa26.48■■□□□ 1.83
COL6A1-203ENST00000466285 ZNF280AP59817 542 aaPredicted RBP26.48■■□□□ 1.83
COL6A1-203ENST00000466285 CASP7P55210 303 aa26.47■■□□□ 1.83
COL6A1-203ENST00000466285 TXNRD3Q86VQ6 643 aa26.47■■□□□ 1.83
COL6A1-203ENST00000466285 STK31Q9BXU1 1019 aa26.47■■□□□ 1.83
COL6A1-203ENST00000466285 GBA2Q9HCG7 927 aaPredicted RBP26.47■■□□□ 1.83
COL6A1-203ENST00000466285 MINPP1Q9UNW1 487 aa26.47■■□□□ 1.83
COL6A1-203ENST00000466285 SALL2Q9Y467 1007 aaPredicted RBP26.47■■□□□ 1.83
COL6A1-203ENST00000466285 MED23Q9ULK4 1368 aa26.46■■□□□ 1.83
COL6A1-203ENST00000466285 SLC4A2P04920 1241 aa26.46■■□□□ 1.83
COL6A1-203ENST00000466285 BRPF1P55201 1214 aaPredicted RBP26.46■■□□□ 1.83
COL6A1-203ENST00000466285 FAM161AQ3B820 660 aa26.46■■□□□ 1.83
COL6A1-203ENST00000466285 ANGEL2Q5VTE6 544 aaKnown RBP26.46■■□□□ 1.83
COL6A1-203ENST00000466285 DCPSQ96C86 337 aaKnown RBP26.46■■□□□ 1.83
COL6A1-203ENST00000466285 BEGAINQ9BUH8 593 aa26.46■■□□□ 1.83
COL6A1-203ENST00000466285 H7C1W4 665 aa26.45■■□□□ 1.82
COL6A1-203ENST00000466285 HSP90B1P14625 803 aaKnown RBP26.45■■□□□ 1.82
COL6A1-203ENST00000466285 ATP2B4P23634 1241 aa26.45■■□□□ 1.82
COL6A1-203ENST00000466285 FLIIQ13045 1269 aa26.45■■□□□ 1.82
COL6A1-203ENST00000466285 CDCA5Q96FF9 252 aa26.45■■□□□ 1.82
COL6A1-203ENST00000466285 CDC5LQ99459 802 aaKnown RBP26.45■■□□□ 1.82
COL6A1-203ENST00000466285 SPINK5Q9NQ38 1064 aaPredicted RBP26.45■■□□□ 1.82
COL6A1-203ENST00000466285 PAPPA2Q9BXP8 1791 aa26.44■■□□□ 1.82
COL6A1-203ENST00000466285 G3V3G9 751 aa26.44■■□□□ 1.82
COL6A1-203ENST00000466285 SCARF1Q14162 830 aa26.44■■□□□ 1.82
COL6A1-203ENST00000466285 DCAF8Q5TAQ9 597 aa26.44■■□□□ 1.82
COL6A1-203ENST00000466285 MRS2Q9HD23 443 aa26.44■■□□□ 1.82
COL6A1-203ENST00000466285 IL16Q14005 1332 aa26.43■■□□□ 1.82
COL6A1-203ENST00000466285 GCKRQ14397 625 aa26.43■■□□□ 1.82
COL6A1-203ENST00000466285 BSDC1Q9NW68 430 aaPredicted RBP26.43■■□□□ 1.82
COL6A1-203ENST00000466285 CCT4P50991 539 aaKnown RBP26.42■■□□□ 1.82
COL6A1-203ENST00000466285 NEXNQ0ZGT2 675 aa26.42■■□□□ 1.82
COL6A1-203ENST00000466285 RGMBQ6NW40 437 aa26.42■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms