RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 R3HDMLQ9H3Y0 253 aa12.89□□□□□ -0.35
USP39-212ENST00000465514 RTL9Q8NET4 1388 aa12.89□□□□□ -0.35
USP39-212ENST00000465514 DLG5Q8TDM6 1919 aa12.89□□□□□ -0.35
USP39-212ENST00000465514 BBOX1O75936 387 aa12.88□□□□□ -0.35
USP39-212ENST00000465514 EN2P19622 333 aaPredicted RBP12.88□□□□□ -0.35
USP39-212ENST00000465514 TM4SF4P48230 202 aa12.88□□□□□ -0.35
USP39-212ENST00000465514 MKRN3Q13064 507 aaKnown RBP12.88□□□□□ -0.35
USP39-212ENST00000465514 TAF7Q15545 349 aaPredicted RBP12.88□□□□□ -0.35
USP39-212ENST00000465514 PPP1R42Q7Z4L9 355 aa12.88□□□□□ -0.35
USP39-212ENST00000465514 TRIM17Q9Y577 477 aa12.88□□□□□ -0.35
USP39-212ENST00000465514 LAMB1P07942 1786 aa12.88□□□□□ -0.35
USP39-212ENST00000465514 UBE2Q2LH0YL09 131 aa12.87□□□□□ -0.35
USP39-212ENST00000465514 ANGEL2Q5VTE6 544 aaKnown RBP12.87□□□□□ -0.35
USP39-212ENST00000465514 KCNQ5Q9NR82 932 aa12.87□□□□□ -0.35
USP39-212ENST00000465514 MIS18AQ9NYP9 233 aa12.87□□□□□ -0.35
USP39-212ENST00000465514 LAMA3Q16787 3333 aa12.87□□□□□ -0.35
USP39-212ENST00000465514 ECE2O60344 883 aa12.86□□□□□ -0.35
USP39-212ENST00000465514 MYL6BP14649 208 aa12.86□□□□□ -0.35
USP39-212ENST00000465514 WASHC4Q2M389 1173 aa12.86□□□□□ -0.35
USP39-212ENST00000465514 OTOP1Q7RTM1 612 aa12.86□□□□□ -0.35
USP39-212ENST00000465514 CFHR5Q9BXR6 569 aa12.86□□□□□ -0.35
USP39-212ENST00000465514 RRP7AQ9Y3A4 280 aaKnown RBP12.86□□□□□ -0.35
USP39-212ENST00000465514 H0YGN5 161 aa12.85□□□□□ -0.35
USP39-212ENST00000465514 RIMBP2O15034 1052 aa12.85□□□□□ -0.35
USP39-212ENST00000465514 DSG3P32926 999 aa12.85□□□□□ -0.35
USP39-212ENST00000465514 SREBF2Q12772 1141 aa12.85□□□□□ -0.35
USP39-212ENST00000465514 GRAPQ13588 217 aa12.85□□□□□ -0.35
USP39-212ENST00000465514 PARP10Q53GL7 1025 aa12.85□□□□□ -0.35
USP39-212ENST00000465514 SLC10A5Q5PT55 438 aa12.85□□□□□ -0.35
USP39-212ENST00000465514 GIGYF2Q6Y7W6 1299 aaKnown RBP12.85□□□□□ -0.35
USP39-212ENST00000465514 GRAPLQ8TC17 118 aaPredicted RBP12.85□□□□□ -0.35
USP39-212ENST00000465514 OTUD5Q96G74 571 aa12.85□□□□□ -0.35
USP39-212ENST00000465514 UTP14AQ9BVJ6 771 aaKnown RBP12.85□□□□□ -0.35
USP39-212ENST00000465514 SCAF8Q9UPN6 1271 aaKnown RBP12.85□□□□□ -0.35
USP39-212ENST00000465514 COL4A1P02462 1669 aa12.85□□□□□ -0.35
USP39-212ENST00000465514 UNC80Q8N2C7 3258 aa12.84□□□□□ -0.35
USP39-212ENST00000465514 NEFMP07197 916 aa12.84□□□□□ -0.35
USP39-212ENST00000465514 SCARF1Q14162 830 aa12.84□□□□□ -0.35
USP39-212ENST00000465514 DOK7Q18PE1 504 aa12.84□□□□□ -0.35
USP39-212ENST00000465514 DDX46Q7L014 1031 aaKnown RBP12.84□□□□□ -0.35
USP39-212ENST00000465514 ZNF609O15014 1411 aa12.84□□□□□ -0.35
USP39-212ENST00000465514 HCLS1P14317 486 aaPredicted RBP12.83□□□□□ -0.36
USP39-212ENST00000465514 TTLL12Q14166 644 aaPredicted RBP12.83□□□□□ -0.36
USP39-212ENST00000465514 CHRDL2Q6WN34 429 aa12.83□□□□□ -0.36
USP39-212ENST00000465514 ARMC5Q96C12 935 aa12.83□□□□□ -0.36
USP39-212ENST00000465514 PRAMEF18Q5VWM3 479 aa12.82□□□□□ -0.36
USP39-212ENST00000465514 PNISRQ8TF01 805 aaKnown RBP12.82□□□□□ -0.36
USP39-212ENST00000465514 PLEKHF1Q96S99 279 aa12.82□□□□□ -0.36
USP39-212ENST00000465514 PTPN22Q9Y2R2 807 aa12.82□□□□□ -0.36
USP39-212ENST00000465514 PITPNM2Q9BZ72 1349 aa12.82□□□□□ -0.36
USP39-212ENST00000465514 C6orf229H3BNL8 230 aa12.81□□□□□ -0.36
USP39-212ENST00000465514 VIL1P09327 827 aaKnown RBP12.81□□□□□ -0.36
USP39-212ENST00000465514 ZNF280AP59817 542 aaPredicted RBP12.81□□□□□ -0.36
USP39-212ENST00000465514 NFE2L2Q16236 605 aa12.81□□□□□ -0.36
USP39-212ENST00000465514 TMC4Q7Z404 712 aa12.81□□□□□ -0.36
USP39-212ENST00000465514 THUMPD2Q9BTF0 503 aaKnown RBP12.81□□□□□ -0.36
USP39-212ENST00000465514 POLLQ9UGP5 575 aa12.81□□□□□ -0.36
USP39-212ENST00000465514 NSFL1CQ9UNZ2 370 aaKnown RBP12.81□□□□□ -0.36
USP39-212ENST00000465514 EIF4A1P60842 406 aaKnown RBP12.8□□□□□ -0.36
USP39-212ENST00000465514 RBM27Q9P2N5 1060 aaKnown RBP12.8□□□□□ -0.36
USP39-212ENST00000465514 ZNF646O15015 1829 aaPredicted RBP12.8□□□□□ -0.36
USP39-212ENST00000465514 ALDH1A1P00352 501 aa12.79□□□□□ -0.36
USP39-212ENST00000465514 GPSM2P81274 684 aa12.79□□□□□ -0.36
USP39-212ENST00000465514 TCIRG1Q13488 830 aa12.79□□□□□ -0.36
USP39-212ENST00000465514 CD99L2Q8TCZ2 262 aa12.79□□□□□ -0.36
USP39-212ENST00000465514 TMEM106CQ9BVX2 250 aa12.79□□□□□ -0.36
USP39-212ENST00000465514 MYOZ2Q9NPC6 264 aa12.79□□□□□ -0.36
USP39-212ENST00000465514 PTPN12Q05209 780 aaKnown RBP12.78□□□□□ -0.36
USP39-212ENST00000465514 SPRYD7Q5W111 196 aa12.78□□□□□ -0.36
USP39-212ENST00000465514 ERO1AQ96HE7 468 aa12.78□□□□□ -0.36
USP39-212ENST00000465514 ZNF333Q96JL9 665 aa12.78□□□□□ -0.36
USP39-212ENST00000465514 EYA3Q99504 573 aa12.78□□□□□ -0.36
USP39-212ENST00000465514 PNNQ9H307 717 aaKnown RBP12.78□□□□□ -0.36
USP39-212ENST00000465514 MAPK8IP3Q9UPT6 1336 aa12.78□□□□□ -0.36
USP39-212ENST00000465514 NF2P35240 595 aa12.77□□□□□ -0.37
USP39-212ENST00000465514 MNX1P50219 401 aaPredicted RBP12.77□□□□□ -0.37
USP39-212ENST00000465514 RSBN1LQ6PCB5 846 aaPredicted RBP12.77□□□□□ -0.37
USP39-212ENST00000465514 NLRP10Q86W26 655 aa12.77□□□□□ -0.37
USP39-212ENST00000465514 IFNL1Q8IU54 200 aa12.77□□□□□ -0.37
USP39-212ENST00000465514 AGBL3Q8NEM8 1001 aa12.77□□□□□ -0.37
USP39-212ENST00000465514 TBC1D16Q8TBP0 767 aa12.77□□□□□ -0.37
USP39-212ENST00000465514 CELF1Q92879 486 aaKnown RBP12.77□□□□□ -0.37
USP39-212ENST00000465514 IGF2BP3O00425 579 aaKnown RBP eCLIP12.76□□□□□ -0.37
USP39-212ENST00000465514 USP17L8P0C7I0 530 aa12.76□□□□□ -0.37
USP39-212ENST00000465514 CAP1Q01518 475 aa12.76□□□□□ -0.37
USP39-212ENST00000465514 PRKG1Q13976 671 aa12.76□□□□□ -0.37
USP39-212ENST00000465514 SAMD1Q6SPF0 538 aaPredicted RBP12.76□□□□□ -0.37
USP39-212ENST00000465514 ZNF428Q96B54 188 aa12.76□□□□□ -0.37
USP39-212ENST00000465514 EFCC1Q9HA90 598 aa12.76□□□□□ -0.37
USP39-212ENST00000465514 TRMT112Q9UI30 125 aaKnown RBP12.76□□□□□ -0.37
USP39-212ENST00000465514 SH3TC1Q8TE82 1336 aa12.76□□□□□ -0.37
USP39-212ENST00000465514 ZSWIM8A7E2V4 1837 aa12.76□□□□□ -0.37
USP39-212ENST00000465514 G3V3G9 751 aa12.75□□□□□ -0.37
USP39-212ENST00000465514 ERBB4Q15303 1308 aa12.75□□□□□ -0.37
USP39-212ENST00000465514 SLC4A8Q2Y0W8 1093 aa12.75□□□□□ -0.37
USP39-212ENST00000465514 NBPF9Q3BBW0 867 aa12.75□□□□□ -0.37
USP39-212ENST00000465514 DCAF8Q5TAQ9 597 aa12.75□□□□□ -0.37
USP39-212ENST00000465514 LRP10Q7Z4F1 713 aa12.75□□□□□ -0.37
USP39-212ENST00000465514 GMLQ99445 158 aa12.75□□□□□ -0.37
USP39-212ENST00000465514 ZC3H12CQ9C0D7 883 aaKnown RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms