RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 C1orf127Q8N9H9 656 aa10.73□□□□□ -0.69
PTCD3-205ENST00000464541 TTC9Q92623 222 aa10.73□□□□□ -0.69
PTCD3-205ENST00000464541 CHRDQ9H2X0 955 aa10.73□□□□□ -0.69
PTCD3-205ENST00000464541 CNTN3Q9P232 1028 aa10.73□□□□□ -0.69
PTCD3-205ENST00000464541 GPR182O15218 404 aa10.72□□□□□ -0.69
PTCD3-205ENST00000464541 C20orf204Q6ZNR8 217 aa10.72□□□□□ -0.69
PTCD3-205ENST00000464541 PODNQ7Z5L7 613 aa10.72□□□□□ -0.69
PTCD3-205ENST00000464541 SPACA7Q96KW9 195 aa10.72□□□□□ -0.69
PTCD3-205ENST00000464541 NSUN5Q96P11 429 aaKnown RBP10.72□□□□□ -0.69
PTCD3-205ENST00000464541 NAGPAQ9UK23 515 aa10.72□□□□□ -0.69
PTCD3-205ENST00000464541 GHRHP01286 108 aa10.71□□□□□ -0.69
PTCD3-205ENST00000464541 CPB1P15086 417 aa10.71□□□□□ -0.69
PTCD3-205ENST00000464541 HOXB4P17483 251 aaPredicted RBP10.71□□□□□ -0.69
PTCD3-205ENST00000464541 ELMSAN1Q6PJG2 1045 aa10.71□□□□□ -0.69
PTCD3-205ENST00000464541 MICALL1Q8N3F8 863 aa10.71□□□□□ -0.69
PTCD3-205ENST00000464541 BEND7Q8N7W2 519 aaPredicted RBP10.71□□□□□ -0.69
PTCD3-205ENST00000464541 SCARF2Q96GP6 870 aaPredicted RBP10.71□□□□□ -0.69
PTCD3-205ENST00000464541 DNAJC25Q9H1X3 360 aa10.71□□□□□ -0.69
PTCD3-205ENST00000464541 RRAGCQ9HB90 399 aa10.71□□□□□ -0.69
PTCD3-205ENST00000464541 ZFYVE28Q9HCC9 887 aa10.71□□□□□ -0.69
PTCD3-205ENST00000464541 MKL2Q9ULH7 1088 aa10.71□□□□□ -0.69
PTCD3-205ENST00000464541 ALBP02768 609 aa10.7□□□□□ -0.7
PTCD3-205ENST00000464541 CYP2E1P05181 493 aaPredicted RBP10.7□□□□□ -0.7
PTCD3-205ENST00000464541 EIF2AK2P19525 551 aaKnown RBP10.7□□□□□ -0.7
PTCD3-205ENST00000464541 MLLT1Q03111 559 aaPredicted RBP10.7□□□□□ -0.7
PTCD3-205ENST00000464541 PERM1Q5SV97 790 aa10.7□□□□□ -0.7
PTCD3-205ENST00000464541 PSAPL1Q6NUJ1 521 aa10.7□□□□□ -0.7
PTCD3-205ENST00000464541 LPIN3Q9BQK8 851 aa10.7□□□□□ -0.7
PTCD3-205ENST00000464541 SALL4Q9UJQ4 1053 aa10.7□□□□□ -0.7
PTCD3-205ENST00000464541 FOXD3Q9UJU5 478 aaPredicted RBP10.7□□□□□ -0.7
PTCD3-205ENST00000464541 AMOTL2Q9Y2J4 779 aa10.7□□□□□ -0.7
PTCD3-205ENST00000464541 M0R082 166 aa10.69□□□□□ -0.7
PTCD3-205ENST00000464541 TREHO43280 583 aa10.69□□□□□ -0.7
PTCD3-205ENST00000464541 LILRB5O75023 590 aa10.69□□□□□ -0.7
PTCD3-205ENST00000464541 RGS9O75916 674 aaPredicted RBP10.69□□□□□ -0.7
PTCD3-205ENST00000464541 EDN3P14138 238 aa10.69□□□□□ -0.7
PTCD3-205ENST00000464541 NCAPG2Q86XI2 1143 aa10.69□□□□□ -0.7
PTCD3-205ENST00000464541 ZNF417Q8TAU3 575 aa10.69□□□□□ -0.7
PTCD3-205ENST00000464541 ZNF587Q96SQ5 575 aaPredicted RBP10.69□□□□□ -0.7
PTCD3-205ENST00000464541 CPNE3O75131 537 aaKnown RBP10.68□□□□□ -0.7
PTCD3-205ENST00000464541 DSC3Q14574 896 aa10.68□□□□□ -0.7
PTCD3-205ENST00000464541 CCDC27Q2M243 656 aa10.68□□□□□ -0.7
PTCD3-205ENST00000464541 COL13A1Q5TAT6 717 aaPredicted RBP10.68□□□□□ -0.7
PTCD3-205ENST00000464541 CACTIN-AS1Q8N1I8 211 aa10.68□□□□□ -0.7
PTCD3-205ENST00000464541 NIF3L1Q9GZT8 377 aa10.68□□□□□ -0.7
PTCD3-205ENST00000464541 J3QW42 95 aa10.67□□□□□ -0.7
PTCD3-205ENST00000464541 RNF225M0QZC1 329 aaPredicted RBP10.67□□□□□ -0.7
PTCD3-205ENST00000464541 GNB5O14775 395 aa10.67□□□□□ -0.7
PTCD3-205ENST00000464541 PLCB3Q01970 1234 aa10.67□□□□□ -0.7
PTCD3-205ENST00000464541 HFE2Q6ZVN8 426 aa10.67□□□□□ -0.7
PTCD3-205ENST00000464541 CEP120Q8N960 986 aa10.67□□□□□ -0.7
PTCD3-205ENST00000464541 PLD4Q96BZ4 506 aa10.67□□□□□ -0.7
PTCD3-205ENST00000464541 JPH1Q9HDC5 661 aaPredicted RBP10.67□□□□□ -0.7
PTCD3-205ENST00000464541 KANSL3Q9P2N6 904 aa10.67□□□□□ -0.7
PTCD3-205ENST00000464541 EREGO14944 169 aa10.66□□□□□ -0.7
PTCD3-205ENST00000464541 SNRPNP63162 240 aaKnown RBP10.66□□□□□ -0.7
PTCD3-205ENST00000464541 COL19A1Q14993 1142 aa10.66□□□□□ -0.7
PTCD3-205ENST00000464541 LINC00114Q6XXX2 140 aa10.66□□□□□ -0.7
PTCD3-205ENST00000464541 SMG9Q9H0W8 520 aaKnown RBP10.66□□□□□ -0.7
PTCD3-205ENST00000464541 EIF1AYO14602 144 aaKnown RBP10.65□□□□□ -0.7
PTCD3-205ENST00000464541 ERCC3P19447 782 aa10.65□□□□□ -0.7
PTCD3-205ENST00000464541 CSRNP1Q96S65 589 aa10.65□□□□□ -0.7
PTCD3-205ENST00000464541 SMNDC1O75940 238 aaKnown RBP eCLIP10.64□□□□□ -0.71
PTCD3-205ENST00000464541 FMR1Q06787 632 aaKnown RBP eCLIP10.64□□□□□ -0.71
PTCD3-205ENST00000464541 ORC1Q13415 861 aa10.64□□□□□ -0.71
PTCD3-205ENST00000464541 GALNT12Q8IXK2 581 aa10.64□□□□□ -0.71
PTCD3-205ENST00000464541 NUDT8Q8WV74 236 aa10.64□□□□□ -0.71
PTCD3-205ENST00000464541 PBX4Q9BYU1 374 aa10.64□□□□□ -0.71
PTCD3-205ENST00000464541 NOP53Q9NZM5 478 aaKnown RBP10.64□□□□□ -0.71
PTCD3-205ENST00000464541 SPDYE3A6NKU9 549 aa10.63□□□□□ -0.71
PTCD3-205ENST00000464541 AFF1P51825 1210 aaKnown RBP10.63□□□□□ -0.71
PTCD3-205ENST00000464541 NID1P14543 1247 aa10.62□□□□□ -0.71
PTCD3-205ENST00000464541 COL9A3Q14050 684 aaPredicted RBP10.62□□□□□ -0.71
PTCD3-205ENST00000464541 TMCO4Q5TGY1 634 aa10.62□□□□□ -0.71
PTCD3-205ENST00000464541 DNAJC14Q6Y2X3 702 aaPredicted RBP10.62□□□□□ -0.71
PTCD3-205ENST00000464541 ALYREFQ86V81 257 aaKnown RBP10.62□□□□□ -0.71
PTCD3-205ENST00000464541 DZANK1Q9NVP4 752 aa10.62□□□□□ -0.71
PTCD3-205ENST00000464541 CNTNAP5Q8WYK1 1306 aa10.61□□□□□ -0.71
PTCD3-205ENST00000464541 ENOX2Q16206 610 aaKnown RBP10.61□□□□□ -0.71
PTCD3-205ENST00000464541 GRIK5Q16478 980 aa10.61□□□□□ -0.71
PTCD3-205ENST00000464541 RASSF4Q9H2L5 321 aa10.61□□□□□ -0.71
PTCD3-205ENST00000464541 ATP11AP98196 1134 aa10.6□□□□□ -0.71
PTCD3-205ENST00000464541 TRIM26Q12899 539 aaPredicted RBP10.6□□□□□ -0.71
PTCD3-205ENST00000464541 C8orf86Q6ZUL3 223 aa10.6□□□□□ -0.71
PTCD3-205ENST00000464541 TMEM102Q8N9M5 508 aaPredicted RBP10.6□□□□□ -0.71
PTCD3-205ENST00000464541 ANKRD33BA6NCL7 494 aa10.59□□□□□ -0.71
PTCD3-205ENST00000464541 FGD1P98174 961 aa10.59□□□□□ -0.71
PTCD3-205ENST00000464541 KIAA0319Q5VV43 1072 aa10.59□□□□□ -0.71
PTCD3-205ENST00000464541 USPL1Q5W0Q7 1092 aa10.59□□□□□ -0.71
PTCD3-205ENST00000464541 CEP135Q66GS9 1140 aa10.59□□□□□ -0.71
PTCD3-205ENST00000464541 FBF1Q8TES7 1133 aa10.59□□□□□ -0.71
PTCD3-205ENST00000464541 CCDC74AQ96AQ1 378 aa10.59□□□□□ -0.71
PTCD3-205ENST00000464541 TRIM11Q96F44 468 aa10.59□□□□□ -0.71
PTCD3-205ENST00000464541 OSMRQ99650 979 aa10.59□□□□□ -0.71
PTCD3-205ENST00000464541 MUC3BQ9H195 1237 aa10.59□□□□□ -0.71
PTCD3-205ENST00000464541 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.59□□□□□ -0.71
PTCD3-205ENST00000464541 NFKBIEO00221 500 aa10.58□□□□□ -0.72
PTCD3-205ENST00000464541 PEAR1Q5VY43 1037 aaPredicted RBP10.58□□□□□ -0.72
PTCD3-205ENST00000464541 MSL1Q68DK7 614 aa10.58□□□□□ -0.72
PTCD3-205ENST00000464541 ILDR2Q71H61 639 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 132.5 ms