RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 TBC1D2BQ9UPU7 963 aa12.18□□□□□ -0.46
PTPRE-205ENST00000463727 ITSN1Q15811 1721 aa12.18□□□□□ -0.46
PTPRE-205ENST00000463727 FER1L4A9Z1Z3 1794 aa12.18□□□□□ -0.46
PTPRE-205ENST00000463727 TAF5LO75529 589 aa12.18□□□□□ -0.46
PTPRE-205ENST00000463727 IL15P40933 162 aaPredicted RBP12.18□□□□□ -0.46
PTPRE-205ENST00000463727 TIMM10P62072 90 aa12.18□□□□□ -0.46
PTPRE-205ENST00000463727 KIF6Q6ZMV9 814 aa12.18□□□□□ -0.46
PTPRE-205ENST00000463727 ARHGEF25Q86VW2 580 aa12.18□□□□□ -0.46
PTPRE-205ENST00000463727 PRDM11Q9NQV5 511 aa12.18□□□□□ -0.46
PTPRE-205ENST00000463727 CNNM1Q9NRU3 951 aa12.18□□□□□ -0.46
PTPRE-205ENST00000463727 NPHP1O15259 732 aa12.18□□□□□ -0.46
PTPRE-205ENST00000463727 POLR3DP05423 398 aaPredicted RBP12.18□□□□□ -0.46
PTPRE-205ENST00000463727 CHST3Q7LGC8 479 aa12.18□□□□□ -0.46
PTPRE-205ENST00000463727 GTF3C6Q969F1 213 aa12.18□□□□□ -0.46
PTPRE-205ENST00000463727 ANKARQ7Z5J8 1434 aa12.17□□□□□ -0.46
PTPRE-205ENST00000463727 TSC1Q92574 1164 aa12.17□□□□□ -0.46
PTPRE-205ENST00000463727 TRMT1Q9NXH9 659 aaKnown RBP12.17□□□□□ -0.46
PTPRE-205ENST00000463727 ADCY9O60503 1353 aa12.17□□□□□ -0.46
PTPRE-205ENST00000463727 RPAP1Q9BWH6 1393 aaPredicted RBP12.17□□□□□ -0.46
PTPRE-205ENST00000463727 GOLGA8BA8MQT2 603 aa12.17□□□□□ -0.46
PTPRE-205ENST00000463727 AKAP17AQ02040 695 aaKnown RBP12.17□□□□□ -0.46
PTPRE-205ENST00000463727 ZNF589Q86UQ0 364 aaPredicted RBP12.17□□□□□ -0.46
PTPRE-205ENST00000463727 KBTBD3Q8NAB2 608 aa12.17□□□□□ -0.46
PTPRE-205ENST00000463727 DCAF5Q96JK2 942 aa12.17□□□□□ -0.46
PTPRE-205ENST00000463727 ORC3Q9UBD5 711 aaPredicted RBP12.17□□□□□ -0.46
PTPRE-205ENST00000463727 USP16Q9Y5T5 823 aa12.17□□□□□ -0.46
PTPRE-205ENST00000463727 CEP170BQ9Y4F5 1589 aaPredicted RBP12.17□□□□□ -0.46
PTPRE-205ENST00000463727 ELP1O95163 1332 aa12.17□□□□□ -0.46
PTPRE-205ENST00000463727 ZNF213O14771 459 aa12.17□□□□□ -0.46
PTPRE-205ENST00000463727 SERPINC1P01008 464 aa12.17□□□□□ -0.46
PTPRE-205ENST00000463727 SEC62Q99442 399 aaKnown RBP12.17□□□□□ -0.46
PTPRE-205ENST00000463727 NR1I2O75469 434 aa12.16□□□□□ -0.46
PTPRE-205ENST00000463727 ZSCAN25Q6NSZ9 544 aa12.16□□□□□ -0.46
PTPRE-205ENST00000463727 LLPHQ9BRT6 129 aaKnown RBP12.16□□□□□ -0.46
PTPRE-205ENST00000463727 CCDC94Q9BW85 323 aaPredicted RBP12.16□□□□□ -0.46
PTPRE-205ENST00000463727 PAXBP1Q9Y5B6 917 aa12.16□□□□□ -0.46
PTPRE-205ENST00000463727 PXDNLA1KZ92 1463 aa12.16□□□□□ -0.46
PTPRE-205ENST00000463727 COPRSQ9NQ92 184 aa12.16□□□□□ -0.46
PTPRE-205ENST00000463727 DBNLQ9UJU6 430 aaKnown RBP12.16□□□□□ -0.46
PTPRE-205ENST00000463727 SMTNL1A8MU46 457 aa12.16□□□□□ -0.46
PTPRE-205ENST00000463727 CDKL5O76039 1030 aa12.16□□□□□ -0.46
PTPRE-205ENST00000463727 SKILP12757 684 aa12.16□□□□□ -0.46
PTPRE-205ENST00000463727 SFPQP23246 707 aaKnown RBP eCLIP12.16□□□□□ -0.46
PTPRE-205ENST00000463727 DHX8Q14562 1220 aaKnown RBP12.16□□□□□ -0.46
PTPRE-205ENST00000463727 MRPS27Q92552 414 aaKnown RBP12.16□□□□□ -0.46
PTPRE-205ENST00000463727 USP42Q9H9J4 1324 aaKnown RBP12.15□□□□□ -0.46
PTPRE-205ENST00000463727 ERICH2A1L162 156 aa12.15□□□□□ -0.46
PTPRE-205ENST00000463727 BIN1O00499 593 aa12.15□□□□□ -0.46
PTPRE-205ENST00000463727 RIOK3O14730 519 aaKnown RBP12.15□□□□□ -0.46
PTPRE-205ENST00000463727 IDH1O75874 414 aaKnown RBP12.15□□□□□ -0.46
PTPRE-205ENST00000463727 SLC3A2P08195 630 aaKnown RBP12.15□□□□□ -0.46
PTPRE-205ENST00000463727 ZNF75DP51815 510 aa12.15□□□□□ -0.46
PTPRE-205ENST00000463727 METTL24Q5JXM2 366 aa12.15□□□□□ -0.46
PTPRE-205ENST00000463727 MNS1Q8NEH6 495 aa12.15□□□□□ -0.46
PTPRE-205ENST00000463727 KIF18AQ8NI77 898 aa12.15□□□□□ -0.46
PTPRE-205ENST00000463727 STRN4Q9NRL3 753 aa12.15□□□□□ -0.46
PTPRE-205ENST00000463727 KNDC1Q76NI1 1749 aa12.15□□□□□ -0.46
PTPRE-205ENST00000463727 SPDYE4A6NLX3 237 aa12.15□□□□□ -0.46
PTPRE-205ENST00000463727 CEP135Q66GS9 1140 aa12.15□□□□□ -0.46
PTPRE-205ENST00000463727 RAB11FIP4Q86YS3 637 aa12.15□□□□□ -0.46
PTPRE-205ENST00000463727 KLHL34Q8N239 644 aa12.15□□□□□ -0.46
PTPRE-205ENST00000463727 HELLSQ9NRZ9 838 aa12.15□□□□□ -0.46
PTPRE-205ENST00000463727 KLF18A0A0U1RQI7 1052 aa12.15□□□□□ -0.47
PTPRE-205ENST00000463727 IFIT5Q13325 482 aaKnown RBP12.15□□□□□ -0.47
PTPRE-205ENST00000463727 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.15□□□□□ -0.47
PTPRE-205ENST00000463727 SYTL4Q96C24 671 aaPredicted RBP12.15□□□□□ -0.47
PTPRE-205ENST00000463727 NCOA5Q9HCD5 579 aaKnown RBP12.15□□□□□ -0.47
PTPRE-205ENST00000463727 MRVI1Q9Y6F6 885 aa12.15□□□□□ -0.47
PTPRE-205ENST00000463727 ATP2B1P20020 1258 aa12.14□□□□□ -0.47
PTPRE-205ENST00000463727 GSDMDP57764 484 aa12.14□□□□□ -0.47
PTPRE-205ENST00000463727 PLBD2Q8NHP8 589 aa12.14□□□□□ -0.47
PTPRE-205ENST00000463727 CABLES1Q8TDN4 633 aa12.14□□□□□ -0.47
PTPRE-205ENST00000463727 PYCARDQ9ULZ3 195 aa12.14□□□□□ -0.47
PTPRE-205ENST00000463727 KIF2AO00139 706 aaPredicted RBP12.14□□□□□ -0.47
PTPRE-205ENST00000463727 RNF113AO15541 343 aaKnown RBP12.14□□□□□ -0.47
PTPRE-205ENST00000463727 AOPEPQ8N6M6 819 aa12.14□□□□□ -0.47
PTPRE-205ENST00000463727 KIAA1524Q8TCG1 905 aa12.14□□□□□ -0.47
PTPRE-205ENST00000463727 RRP12Q5JTH9 1297 aaKnown RBP12.14□□□□□ -0.47
PTPRE-205ENST00000463727 ATL3Q6DD88 541 aa12.14□□□□□ -0.47
PTPRE-205ENST00000463727 PDILTQ8N807 584 aa12.14□□□□□ -0.47
PTPRE-205ENST00000463727 NCOA7Q8NI08 942 aa12.14□□□□□ -0.47
PTPRE-205ENST00000463727 IGKV5-2P06315 115 aa12.13□□□□□ -0.47
PTPRE-205ENST00000463727 CYP21A2P08686 494 aa12.13□□□□□ -0.47
PTPRE-205ENST00000463727 FAM160A1Q05DH4 1040 aa12.13□□□□□ -0.47
PTPRE-205ENST00000463727 NAA16Q6N069 864 aaPredicted RBP12.13□□□□□ -0.47
PTPRE-205ENST00000463727 CREBRFQ8IUR6 639 aa12.13□□□□□ -0.47
PTPRE-205ENST00000463727 KCNG4Q8TDN1 519 aa12.13□□□□□ -0.47
PTPRE-205ENST00000463727 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.13□□□□□ -0.47
PTPRE-205ENST00000463727 SETD1BQ9UPS6 1966 aaKnown RBP12.13□□□□□ -0.47
PTPRE-205ENST00000463727 CEMIPQ8WUJ3 1361 aa12.13□□□□□ -0.47
PTPRE-205ENST00000463727 CCP110O43303 1012 aa12.13□□□□□ -0.47
PTPRE-205ENST00000463727 ZFYP08048 801 aaPredicted RBP12.13□□□□□ -0.47
PTPRE-205ENST00000463727 SART3Q15020 963 aaKnown RBP12.13□□□□□ -0.47
PTPRE-205ENST00000463727 LRMPQ12912 555 aa12.13□□□□□ -0.47
PTPRE-205ENST00000463727 CCAR2Q8N163 923 aaKnown RBP12.13□□□□□ -0.47
PTPRE-205ENST00000463727 HAUS7Q99871 368 aa12.13□□□□□ -0.47
PTPRE-205ENST00000463727 CFAP100Q494V2 611 aa12.12□□□□□ -0.47
PTPRE-205ENST00000463727 ARGLU1Q9NWB6 273 aaPredicted RBP12.12□□□□□ -0.47
PTPRE-205ENST00000463727 A0A1B0GUL7 405 aa12.12□□□□□ -0.47
PTPRE-205ENST00000463727 PHKG2P15735 406 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms