RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 DCAF8Q5TAQ9 597 aa9.29□□□□□ -0.92
PTPRF-210ENST00000463041 ZC3H15Q8WU90 426 aaKnown RBP9.29□□□□□ -0.92
PTPRF-210ENST00000463041 PLA2G12BQ9BX93 195 aa9.29□□□□□ -0.92
PTPRF-210ENST00000463041 SPINK5Q9NQ38 1064 aaPredicted RBP9.29□□□□□ -0.92
PTPRF-210ENST00000463041 BSDC1Q9NW68 430 aaPredicted RBP9.29□□□□□ -0.92
PTPRF-210ENST00000463041 GGA1Q9UJY5 639 aa9.29□□□□□ -0.92
PTPRF-210ENST00000463041 ADAMTSL1Q8N6G6 1762 aa9.29□□□□□ -0.92
PTPRF-210ENST00000463041 TRPM7Q96QT4 1865 aa9.28□□□□□ -0.92
PTPRF-210ENST00000463041 CSF1RP07333 972 aa9.28□□□□□ -0.92
PTPRF-210ENST00000463041 RPS12P25398 132 aaKnown RBP9.28□□□□□ -0.92
PTPRF-210ENST00000463041 DOK7Q18PE1 504 aa9.28□□□□□ -0.92
PTPRF-210ENST00000463041 DEFB115Q30KQ5 88 aa9.28□□□□□ -0.92
PTPRF-210ENST00000463041 UBE3BQ7Z3V4 1068 aa9.28□□□□□ -0.92
PTPRF-210ENST00000463041 CCDC85AQ96PX6 553 aaPredicted RBP9.28□□□□□ -0.92
PTPRF-210ENST00000463041 DBNDD1Q9H9R9 158 aa9.28□□□□□ -0.92
PTPRF-210ENST00000463041 MKRN1Q9UHC7 482 aaKnown RBP9.28□□□□□ -0.92
PTPRF-210ENST00000463041 XDHP47989 1333 aa9.28□□□□□ -0.92
PTPRF-210ENST00000463041 LTBP1Q14766 1721 aa9.28□□□□□ -0.92
PTPRF-210ENST00000463041 RTL9Q8NET4 1388 aa9.27□□□□□ -0.93
PTPRF-210ENST00000463041 PSMD14O00487 310 aa9.27□□□□□ -0.93
PTPRF-210ENST00000463041 ECE2O60344 883 aa9.27□□□□□ -0.93
PTPRF-210ENST00000463041 UFL1O94874 794 aa9.27□□□□□ -0.93
PTPRF-210ENST00000463041 VIL1P09327 827 aaKnown RBP9.27□□□□□ -0.93
PTPRF-210ENST00000463041 CASP7P55210 303 aa9.27□□□□□ -0.93
PTPRF-210ENST00000463041 IFFO2Q5TF58 517 aa9.27□□□□□ -0.93
PTPRF-210ENST00000463041 GREM2Q9H772 168 aa9.27□□□□□ -0.93
PTPRF-210ENST00000463041 MINPP1Q9UNW1 487 aa9.27□□□□□ -0.93
PTPRF-210ENST00000463041 ZNF521Q96K83 1311 aa9.27□□□□□ -0.93
PTPRF-210ENST00000463041 CNTNAP1P78357 1384 aa9.26□□□□□ -0.93
PTPRF-210ENST00000463041 DUOX1Q9NRD9 1551 aa9.26□□□□□ -0.93
PTPRF-210ENST00000463041 RASSF10A6NK89 507 aa9.26□□□□□ -0.93
PTPRF-210ENST00000463041 IGHMBP2P38935 993 aaKnown RBP9.26□□□□□ -0.93
PTPRF-210ENST00000463041 HIRAP54198 1017 aaPredicted RBP9.26□□□□□ -0.93
PTPRF-210ENST00000463041 BEND3Q5T5X7 828 aa9.26□□□□□ -0.93
PTPRF-210ENST00000463041 CDC37L1Q7L3B6 337 aa9.26□□□□□ -0.93
PTPRF-210ENST00000463041 PODNQ7Z5L7 613 aa9.26□□□□□ -0.93
PTPRF-210ENST00000463041 KCNQ5Q9NR82 932 aa9.26□□□□□ -0.93
PTPRF-210ENST00000463041 LEMD3Q9Y2U8 911 aa9.26□□□□□ -0.93
PTPRF-210ENST00000463041 ZBTB12Q9Y330 459 aaPredicted RBP9.26□□□□□ -0.93
PTPRF-210ENST00000463041 E9PSI1 815 aa9.25□□□□□ -0.93
PTPRF-210ENST00000463041 F6X3S4 739 aa9.25□□□□□ -0.93
PTPRF-210ENST00000463041 HSPA1AP0DMV8 641 aaKnown RBP9.25□□□□□ -0.93
PTPRF-210ENST00000463041 HSPA1BP0DMV9 641 aaKnown RBP9.25□□□□□ -0.93
PTPRF-210ENST00000463041 ITGA6P23229 1130 aa9.25□□□□□ -0.93
PTPRF-210ENST00000463041 VEGFBP49765 207 aa9.25□□□□□ -0.93
PTPRF-210ENST00000463041 CCT4P50991 539 aaKnown RBP9.25□□□□□ -0.93
PTPRF-210ENST00000463041 CST9Q5W186 159 aa9.25□□□□□ -0.93
PTPRF-210ENST00000463041 MICALL2Q8IY33 904 aa9.25□□□□□ -0.93
PTPRF-210ENST00000463041 AGBL3Q8NEM8 1001 aa9.25□□□□□ -0.93
PTPRF-210ENST00000463041 GPR101Q96P66 508 aaPredicted RBP9.25□□□□□ -0.93
PTPRF-210ENST00000463041 MPHOSPH8Q99549 860 aa9.25□□□□□ -0.93
PTPRF-210ENST00000463041 ANKRD2Q9GZV1 360 aa9.25□□□□□ -0.93
PTPRF-210ENST00000463041 COL4A1P02462 1669 aa9.25□□□□□ -0.93
PTPRF-210ENST00000463041 SCN9AQ15858 1988 aa9.24□□□□□ -0.93
PTPRF-210ENST00000463041 ANKRD18BA2A2Z9 1011 aa9.24□□□□□ -0.93
PTPRF-210ENST00000463041 USP17L3A6NCW0 530 aa9.24□□□□□ -0.93
PTPRF-210ENST00000463041 USP17L4A6NCW7 530 aa9.24□□□□□ -0.93
PTPRF-210ENST00000463041 CCER2I3L3R5 266 aa9.24□□□□□ -0.93
PTPRF-210ENST00000463041 ALDH1L1O75891 902 aa9.24□□□□□ -0.93
PTPRF-210ENST00000463041 FOXO4P98177 505 aa9.24□□□□□ -0.93
PTPRF-210ENST00000463041 IFIT5Q13325 482 aaKnown RBP9.24□□□□□ -0.93
PTPRF-210ENST00000463041 RSBN1LQ6PCB5 846 aaPredicted RBP9.24□□□□□ -0.93
PTPRF-210ENST00000463041 USP17L1Q7RTZ2 530 aa9.24□□□□□ -0.93
PTPRF-210ENST00000463041 SAMD7Q7Z3H4 446 aa9.24□□□□□ -0.93
PTPRF-210ENST00000463041 TRPM4Q8TD43 1214 aa9.24□□□□□ -0.93
PTPRF-210ENST00000463041 C9orf78Q9NZ63 289 aaPredicted RBP9.24□□□□□ -0.93
PTPRF-210ENST00000463041 ABT1Q9ULW3 272 aaKnown RBP9.24□□□□□ -0.93
PTPRF-210ENST00000463041 GRM8O00222 908 aa9.23□□□□□ -0.93
PTPRF-210ENST00000463041 TRAF5O00463 557 aa9.23□□□□□ -0.93
PTPRF-210ENST00000463041 ECE1P42892 770 aa9.23□□□□□ -0.93
PTPRF-210ENST00000463041 MMP14P50281 582 aa9.23□□□□□ -0.93
PTPRF-210ENST00000463041 FMR1Q06787 632 aaKnown RBP eCLIP9.23□□□□□ -0.93
PTPRF-210ENST00000463041 SLFN5Q08AF3 891 aa9.23□□□□□ -0.93
PTPRF-210ENST00000463041 TBC1D10BQ4KMP7 808 aaPredicted RBP9.23□□□□□ -0.93
PTPRF-210ENST00000463041 SLC4A10Q6U841 1118 aa9.23□□□□□ -0.93
PTPRF-210ENST00000463041 DCPSQ96C86 337 aaKnown RBP9.23□□□□□ -0.93
PTPRF-210ENST00000463041 GLIS2Q9BZE0 524 aaPredicted RBP9.23□□□□□ -0.93
PTPRF-210ENST00000463041 SRCIN1Q9C0H9 1055 aa9.23□□□□□ -0.93
PTPRF-210ENST00000463041 COA1Q9GZY4 146 aa9.23□□□□□ -0.93
PTPRF-210ENST00000463041 WDR33Q9C0J8 1336 aaKnown RBP9.23□□□□□ -0.93
PTPRF-210ENST00000463041 PSME4Q14997 1843 aa9.22□□□□□ -0.93
PTPRF-210ENST00000463041 SHTN1A0MZ66 631 aa9.22□□□□□ -0.93
PTPRF-210ENST00000463041 WTIPA6NIX2 430 aaPredicted RBP9.22□□□□□ -0.93
PTPRF-210ENST00000463041 CELF2O95319 508 aaKnown RBP9.22□□□□□ -0.93
PTPRF-210ENST00000463041 USP17L8P0C7I0 530 aa9.22□□□□□ -0.93
PTPRF-210ENST00000463041 ZNF280AP59817 542 aaPredicted RBP9.22□□□□□ -0.93
PTPRF-210ENST00000463041 MAP2K1Q02750 393 aaPredicted RBP9.22□□□□□ -0.93
PTPRF-210ENST00000463041 CCDC57Q2TAC2 916 aa9.22□□□□□ -0.93
PTPRF-210ENST00000463041 FAM161AQ3B820 660 aa9.22□□□□□ -0.93
PTPRF-210ENST00000463041 RBM26Q5T8P6 1007 aaKnown RBP9.22□□□□□ -0.93
PTPRF-210ENST00000463041 COL13A1Q5TAT6 717 aaPredicted RBP9.22□□□□□ -0.93
PTPRF-210ENST00000463041 LMBR1LQ6UX01 489 aa9.22□□□□□ -0.93
PTPRF-210ENST00000463041 USP48Q86UV5 1035 aa9.22□□□□□ -0.93
PTPRF-210ENST00000463041 MRPL50Q8N5N7 158 aaKnown RBP9.22□□□□□ -0.93
PTPRF-210ENST00000463041 HHIPL1Q96JK4 782 aa9.22□□□□□ -0.93
PTPRF-210ENST00000463041 GMLQ99445 158 aa9.22□□□□□ -0.93
PTPRF-210ENST00000463041 WBP1LQ9NX94 342 aa9.22□□□□□ -0.93
PTPRF-210ENST00000463041 TLL2Q9Y6L7 1015 aa9.22□□□□□ -0.93
PTPRF-210ENST00000463041 ZNF804BA4D1E1 1349 aa9.22□□□□□ -0.93
PTPRF-210ENST00000463041 MED23Q9ULK4 1368 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms