RNA–Protein interactions for RNA: ENST00000462668.5

SMC4-203, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 4,235 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-203ENST00000462668 C8orf48Q96LL4 319 aa4.3□□□□□ -1.72
SMC4-203ENST00000462668 AGERQ15109 404 aa4.3□□□□□ -1.72
SMC4-203ENST00000462668 RC3H1Q5TC82 1133 aaKnown RBP4.3□□□□□ -1.72
SMC4-203ENST00000462668 NXPE4Q6UWF7 544 aa4.3□□□□□ -1.72
SMC4-203ENST00000462668 ZNF296Q8WUU4 475 aaPredicted RBP4.3□□□□□ -1.72
SMC4-203ENST00000462668 HNRNPLLQ8WVV9 542 aaKnown RBP4.3□□□□□ -1.72
SMC4-203ENST00000462668 NPHS2Q9NP85 383 aa4.3□□□□□ -1.72
SMC4-203ENST00000462668 THRAP3Q9Y2W1 955 aaKnown RBP4.3□□□□□ -1.72
SMC4-203ENST00000462668 RNF223E7ERA6 249 aa4.3□□□□□ -1.72
SMC4-203ENST00000462668 ITPKAP23677 461 aa4.3□□□□□ -1.72
SMC4-203ENST00000462668 DDR2Q16832 855 aa4.3□□□□□ -1.72
SMC4-203ENST00000462668 SCARA3Q6AZY7 606 aa4.3□□□□□ -1.72
SMC4-203ENST00000462668 AGMOQ6ZNB7 445 aa4.3□□□□□ -1.72
SMC4-203ENST00000462668 TRIM56Q9BRZ2 755 aaKnown RBP4.3□□□□□ -1.72
SMC4-203ENST00000462668 KRTAP3-3Q9BYR6 98 aa4.3□□□□□ -1.72
SMC4-203ENST00000462668 KRTAP3-2Q9BYR7 98 aa4.3□□□□□ -1.72
SMC4-203ENST00000462668 PGPEP1Q9NXJ5 209 aa4.3□□□□□ -1.72
SMC4-203ENST00000462668 FAM221AA4D161 298 aa4.29□□□□□ -1.72
SMC4-203ENST00000462668 RFPL3O75679 317 aa4.29□□□□□ -1.72
SMC4-203ENST00000462668 HCN4Q9Y3Q4 1203 aa4.29□□□□□ -1.72
SMC4-203ENST00000462668 A0A1W2PP55 124 aa4.29□□□□□ -1.72
SMC4-203ENST00000462668 ARSDP51689 593 aa4.29□□□□□ -1.72
SMC4-203ENST00000462668 FAM196AQ6ZSG2 479 aa4.29□□□□□ -1.72
SMC4-203ENST00000462668 TAB3Q8N5C8 712 aaPredicted RBP4.29□□□□□ -1.72
SMC4-203ENST00000462668 CELF2-AS1Q8N7Q2 184 aa4.29□□□□□ -1.72
SMC4-203ENST00000462668 C19orf47Q8N9M1 422 aaKnown RBP4.29□□□□□ -1.72
SMC4-203ENST00000462668 APPBP2Q92624 585 aa4.29□□□□□ -1.72
SMC4-203ENST00000462668 RAB6BQ9NRW1 208 aa4.29□□□□□ -1.72
SMC4-203ENST00000462668 EIF3JO75822 258 aaKnown RBP4.29□□□□□ -1.72
SMC4-203ENST00000462668 NLRP8Q86W28 1048 aa4.29□□□□□ -1.72
SMC4-203ENST00000462668 PCGF6Q9BYE7 350 aa4.29□□□□□ -1.72
SMC4-203ENST00000462668 EHMT1Q9H9B1 1298 aa4.29□□□□□ -1.72
SMC4-203ENST00000462668 ATE1O95260 518 aa4.29□□□□□ -1.72
SMC4-203ENST00000462668 DALRD3Q5D0E6 543 aaKnown RBP4.29□□□□□ -1.72
SMC4-203ENST00000462668 REXO1Q8N1G1 1221 aaKnown RBP4.29□□□□□ -1.72
SMC4-203ENST00000462668 NIFKQ9BYG3 293 aaKnown RBP4.29□□□□□ -1.72
SMC4-203ENST00000462668 TRAK1Q9UPV9 953 aa4.29□□□□□ -1.72
SMC4-203ENST00000462668 FAM205CA6NFA0 338 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 CDC45O75419 566 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 IBSPP21815 317 aaPredicted RBP4.28□□□□□ -1.72
SMC4-203ENST00000462668 TM4SF20Q53R12 229 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 RPS26P11Q5JNZ5 115 aaPredicted RBP4.28□□□□□ -1.72
SMC4-203ENST00000462668 SAMD5Q5TGI4 173 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 ZNF280CQ8ND82 737 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 ELP3Q9H9T3 547 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 TLL2Q9Y6L7 1015 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 ESYT3A0FGR9 886 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 CLSTN1O94985 981 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 GYS2P54840 703 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 LONRF2Q1L5Z9 754 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 NBPF10Q6P3W6 841 aaKnown RBP4.28□□□□□ -1.72
SMC4-203ENST00000462668 HOMER1Q86YM7 354 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 SMC5Q8IY18 1101 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 FAM169BQ8N8A8 192 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 CNTNAP3BQ96NU0 1288 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 FEZ1Q99689 392 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 CNTNAP3Q9BZ76 1288 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 EFR3BQ9Y2G0 817 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 EREGO14944 169 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 C16orf86Q6ZW13 317 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 BTLAQ7Z6A9 289 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 THNSL2Q86YJ6 484 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 C1orf127Q8N9H9 656 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 NGLY1Q96IV0 654 aa4.28□□□□□ -1.72
SMC4-203ENST00000462668 SUPT16HQ9Y5B9 1047 aaKnown RBP4.28□□□□□ -1.72
SMC4-203ENST00000462668 TMEM238LA0A1B0GVL6 79 aa4.27□□□□□ -1.73
SMC4-203ENST00000462668 TPD52L2O43399 206 aaKnown RBP4.27□□□□□ -1.73
SMC4-203ENST00000462668 CRKP46108 304 aa4.27□□□□□ -1.73
SMC4-203ENST00000462668 ZIC5Q96T25 663 aa4.27□□□□□ -1.73
SMC4-203ENST00000462668 TTF2Q9UNY4 1162 aaKnown RBP4.27□□□□□ -1.73
SMC4-203ENST00000462668 PPEF1O14829 653 aaPredicted RBP4.27□□□□□ -1.73
SMC4-203ENST00000462668 TFE3P19532 575 aaPredicted RBP4.27□□□□□ -1.73
SMC4-203ENST00000462668 LIG3P49916 1009 aa4.27□□□□□ -1.73
SMC4-203ENST00000462668 IDH3AP50213 366 aa4.27□□□□□ -1.73
SMC4-203ENST00000462668 EXOSC10Q01780 885 aaKnown RBP4.27□□□□□ -1.73
SMC4-203ENST00000462668 C4orf17Q53FE4 359 aa4.27□□□□□ -1.73
SMC4-203ENST00000462668 THAP3Q8WTV1 239 aaPredicted RBP4.27□□□□□ -1.73
SMC4-203ENST00000462668 SRPK1Q96SB4 655 aaKnown RBP4.27□□□□□ -1.73
SMC4-203ENST00000462668 ZNRF3Q9ULT6 936 aa4.27□□□□□ -1.73
SMC4-203ENST00000462668 FNDC3AQ9Y2H6 1198 aaKnown RBP4.27□□□□□ -1.73
SMC4-203ENST00000462668 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.27□□□□□ -1.73
SMC4-203ENST00000462668 PRR36Q9H6K5 1346 aa4.27□□□□□ -1.73
SMC4-203ENST00000462668 MEIS3P2A8K0S8 358 aa4.27□□□□□ -1.73
SMC4-203ENST00000462668 UPK3BL1B0FP48 263 aa4.27□□□□□ -1.73
SMC4-203ENST00000462668 UPK3BL2E5RIL1 263 aa4.27□□□□□ -1.73
SMC4-203ENST00000462668 BHLHE41Q9C0J9 482 aaPredicted RBP4.27□□□□□ -1.73
SMC4-203ENST00000462668 ZFYVE1Q9HBF4 777 aa4.27□□□□□ -1.73
SMC4-203ENST00000462668 ANKIB1Q9P2G1 1089 aa4.27□□□□□ -1.73
SMC4-203ENST00000462668 GOLGA8CPA6NN73 597 aa4.26□□□□□ -1.73
SMC4-203ENST00000462668 PMLP29590 882 aa4.26□□□□□ -1.73
SMC4-203ENST00000462668 AAMPQ13685 434 aa4.26□□□□□ -1.73
SMC4-203ENST00000462668 DNAJC7Q99615 494 aa4.26□□□□□ -1.73
SMC4-203ENST00000462668 FANCLQ9NW38 375 aa4.26□□□□□ -1.73
SMC4-203ENST00000462668 RTCBQ9Y3I0 505 aaKnown RBP4.26□□□□□ -1.73
SMC4-203ENST00000462668 ENC1O14682 589 aa4.26□□□□□ -1.73
SMC4-203ENST00000462668 MAP4K4O95819 1239 aaPredicted RBP4.26□□□□□ -1.73
SMC4-203ENST00000462668 ANAPC15P60006 121 aa4.26□□□□□ -1.73
SMC4-203ENST00000462668 ZNF438Q7Z4V0 828 aa4.26□□□□□ -1.73
SMC4-203ENST00000462668 ST13P5Q8NFI4 369 aaPredicted RBP4.26□□□□□ -1.73
SMC4-203ENST00000462668 CRISPLD1Q9H336 500 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms