RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 POLR3DP05423 398 aaPredicted RBP7.08□□□□□ -1.28
VPS41-210ENST00000462429 ITGAEP38570 1179 aa7.08□□□□□ -1.28
VPS41-210ENST00000462429 KRT76Q01546 638 aa7.08□□□□□ -1.28
VPS41-210ENST00000462429 SLCO4C1Q6ZQN7 724 aa7.08□□□□□ -1.28
VPS41-210ENST00000462429 NSUN5Q96P11 429 aaKnown RBP7.08□□□□□ -1.28
VPS41-210ENST00000462429 RBSNQ9H1K0 784 aa7.08□□□□□ -1.28
VPS41-210ENST00000462429 NLRP2Q9NX02 1062 aa7.08□□□□□ -1.28
VPS41-210ENST00000462429 SALL4Q9UJQ4 1053 aa7.08□□□□□ -1.28
VPS41-210ENST00000462429 WWC3Q9ULE0 1092 aa7.08□□□□□ -1.28
VPS41-210ENST00000462429 LOC102724428A0A0B4J2F2 783 aa7.07□□□□□ -1.28
VPS41-210ENST00000462429 KIF4AO95239 1232 aa7.07□□□□□ -1.28
VPS41-210ENST00000462429 GHRHP01286 108 aa7.07□□□□□ -1.28
VPS41-210ENST00000462429 ALAS2P22557 587 aa7.07□□□□□ -1.28
VPS41-210ENST00000462429 GMPRP36959 345 aa7.07□□□□□ -1.28
VPS41-210ENST00000462429 ADH7P40394 386 aa7.07□□□□□ -1.28
VPS41-210ENST00000462429 SIK1P57059 783 aa7.07□□□□□ -1.28
VPS41-210ENST00000462429 XPCQ01831 940 aaPredicted RBP7.07□□□□□ -1.28
VPS41-210ENST00000462429 FCHSD1Q86WN1 690 aa7.07□□□□□ -1.28
VPS41-210ENST00000462429 FRMD6Q96NE9 622 aa7.07□□□□□ -1.28
VPS41-210ENST00000462429 KLF15Q9UIH9 416 aa7.07□□□□□ -1.28
VPS41-210ENST00000462429 ELOA3CA0A087WX78 387 aaPredicted RBP7.06□□□□□ -1.28
VPS41-210ENST00000462429 ELOA3DA6NLF2 546 aaPredicted RBP7.06□□□□□ -1.28
VPS41-210ENST00000462429 ZBTB42B2RXF5 422 aa7.06□□□□□ -1.28
VPS41-210ENST00000462429 RBM25P49756 843 aaKnown RBP7.06□□□□□ -1.28
VPS41-210ENST00000462429 TAGLNQ01995 201 aaKnown RBP7.06□□□□□ -1.28
VPS41-210ENST00000462429 MLLT1Q03111 559 aaPredicted RBP7.06□□□□□ -1.28
VPS41-210ENST00000462429 ELOA3BQ3SY89 546 aa7.06□□□□□ -1.28
VPS41-210ENST00000462429 TREML4Q6UXN2 200 aa7.06□□□□□ -1.28
VPS41-210ENST00000462429 ELOA3Q8NG57 546 aa7.06□□□□□ -1.28
VPS41-210ENST00000462429 ACDQ96AP0 544 aa7.06□□□□□ -1.28
VPS41-210ENST00000462429 SETDB2Q96T68 719 aa7.06□□□□□ -1.28
VPS41-210ENST00000462429 DUSP9Q99956 384 aaKnown RBP7.06□□□□□ -1.28
VPS41-210ENST00000462429 NPHS2Q9NP85 383 aa7.06□□□□□ -1.28
VPS41-210ENST00000462429 SLC6A14Q9UN76 642 aa7.06□□□□□ -1.28
VPS41-210ENST00000462429 SPG7Q9UQ90 795 aa7.06□□□□□ -1.28
VPS41-210ENST00000462429 GADD45BO75293 160 aaPredicted RBP7.05□□□□□ -1.28
VPS41-210ENST00000462429 SLURP2P0DP57 97 aa7.05□□□□□ -1.28
VPS41-210ENST00000462429 EIF2AK2P19525 551 aaKnown RBP7.05□□□□□ -1.28
VPS41-210ENST00000462429 GNA15P30679 374 aa7.05□□□□□ -1.28
VPS41-210ENST00000462429 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.05□□□□□ -1.28
VPS41-210ENST00000462429 COL13A1Q5TAT6 717 aaPredicted RBP7.05□□□□□ -1.28
VPS41-210ENST00000462429 HFE2Q6ZVN8 426 aa7.05□□□□□ -1.28
VPS41-210ENST00000462429 FAM35AQ86V20 835 aa7.05□□□□□ -1.28
VPS41-210ENST00000462429 PARP2Q9UGN5 583 aa7.05□□□□□ -1.28
VPS41-210ENST00000462429 J3QW42 95 aa7.04□□□□□ -1.28
VPS41-210ENST00000462429 GIPC1O14908 333 aa7.04□□□□□ -1.28
VPS41-210ENST00000462429 CPB1P15086 417 aa7.04□□□□□ -1.28
VPS41-210ENST00000462429 PSMD2Q13200 908 aa7.04□□□□□ -1.28
VPS41-210ENST00000462429 KIAA0319Q5VV43 1072 aa7.04□□□□□ -1.28
VPS41-210ENST00000462429 CEP120Q8N960 986 aa7.04□□□□□ -1.28
VPS41-210ENST00000462429 EPS8L3Q8TE67 593 aaKnown RBP7.04□□□□□ -1.28
VPS41-210ENST00000462429 MDFIQ99750 246 aa7.04□□□□□ -1.28
VPS41-210ENST00000462429 MRS2Q9HD23 443 aa7.04□□□□□ -1.28
VPS41-210ENST00000462429 LRRC4BQ9NT99 713 aa7.04□□□□□ -1.28
VPS41-210ENST00000462429 EPXP11678 715 aa7.03□□□□□ -1.28
VPS41-210ENST00000462429 IRS1P35568 1242 aa7.03□□□□□ -1.28
VPS41-210ENST00000462429 DAB2P98082 770 aa7.03□□□□□ -1.28
VPS41-210ENST00000462429 LCE2CQ5TA81 110 aa7.03□□□□□ -1.28
VPS41-210ENST00000462429 PEAR1Q5VY43 1037 aaPredicted RBP7.03□□□□□ -1.28
VPS41-210ENST00000462429 ELMSAN1Q6PJG2 1045 aa7.03□□□□□ -1.28
VPS41-210ENST00000462429 MICALL1Q8N3F8 863 aa7.03□□□□□ -1.28
VPS41-210ENST00000462429 EDARADDQ8WWZ3 215 aa7.03□□□□□ -1.28
VPS41-210ENST00000462429 OSMRQ99650 979 aa7.03□□□□□ -1.28
VPS41-210ENST00000462429 EHD4Q9H223 541 aa7.03□□□□□ -1.28
VPS41-210ENST00000462429 SUV39H2Q9H5I1 410 aa7.03□□□□□ -1.28
VPS41-210ENST00000462429 LATS2Q9NRM7 1088 aa7.03□□□□□ -1.28
VPS41-210ENST00000462429 PPP4R2Q9NY27 417 aa7.03□□□□□ -1.28
VPS41-210ENST00000462429 TRAK1Q9UPV9 953 aa7.03□□□□□ -1.28
VPS41-210ENST00000462429 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.03□□□□□ -1.28
VPS41-210ENST00000462429 A0A1W2PP55 124 aa7.02□□□□□ -1.29
VPS41-210ENST00000462429 OIP5O43482 229 aa7.02□□□□□ -1.29
VPS41-210ENST00000462429 SMNDC1O75940 238 aaKnown RBP eCLIP7.02□□□□□ -1.29
VPS41-210ENST00000462429 BCRP11274 1271 aa7.02□□□□□ -1.29
VPS41-210ENST00000462429 KANK3Q6NY19 840 aa7.02□□□□□ -1.29
VPS41-210ENST00000462429 PI16Q6UXB8 463 aa7.02□□□□□ -1.29
VPS41-210ENST00000462429 TMC4Q7Z404 712 aa7.02□□□□□ -1.29
VPS41-210ENST00000462429 GALNT6Q8NCL4 622 aa7.02□□□□□ -1.29
VPS41-210ENST00000462429 PBX4Q9BYU1 374 aa7.02□□□□□ -1.29
VPS41-210ENST00000462429 SRCIN1Q9C0H9 1055 aa7.02□□□□□ -1.29
VPS41-210ENST00000462429 DZANK1Q9NVP4 752 aa7.02□□□□□ -1.29
VPS41-210ENST00000462429 FRRS1LQ9P0K9 344 aa7.02□□□□□ -1.29
VPS41-210ENST00000462429 SORBS3O60504 671 aa7.01□□□□□ -1.29
VPS41-210ENST00000462429 EIF4BP23588 611 aaKnown RBP7.01□□□□□ -1.29
VPS41-210ENST00000462429 MAP3K10Q02779 954 aa7.01□□□□□ -1.29
VPS41-210ENST00000462429 PERM1Q5SV97 790 aa7.01□□□□□ -1.29
VPS41-210ENST00000462429 PSAPL1Q6NUJ1 521 aa7.01□□□□□ -1.29
VPS41-210ENST00000462429 NPM2Q86SE8 214 aaKnown RBP7.01□□□□□ -1.29
VPS41-210ENST00000462429 TMEM102Q8N9M5 508 aaPredicted RBP7.01□□□□□ -1.29
VPS41-210ENST00000462429 ZNF428Q96B54 188 aa7.01□□□□□ -1.29
VPS41-210ENST00000462429 PLD4Q96BZ4 506 aa7.01□□□□□ -1.29
VPS41-210ENST00000462429 MRRFQ96E11 262 aaKnown RBP7.01□□□□□ -1.29
VPS41-210ENST00000462429 ZKSCAN3Q9BRR0 538 aa7.01□□□□□ -1.29
VPS41-210ENST00000462429 RASSF4Q9H2L5 321 aa7.01□□□□□ -1.29
VPS41-210ENST00000462429 LIN7BQ9HAP6 207 aa7.01□□□□□ -1.29
VPS41-210ENST00000462429 NAGPAQ9UK23 515 aa7.01□□□□□ -1.29
VPS41-210ENST00000462429 AK5Q9Y6K8 562 aa7.01□□□□□ -1.29
VPS41-210ENST00000462429 RGS9O75916 674 aaPredicted RBP7□□□□□ -1.29
VPS41-210ENST00000462429 CELA2BP08218 269 aaPredicted RBP7□□□□□ -1.29
VPS41-210ENST00000462429 ACPPP15309 386 aa7□□□□□ -1.29
VPS41-210ENST00000462429 ATP11AP98196 1134 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms