RNA–Protein interactions for RNA: ENST00000460928.1

ATPAF1-203, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 869 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-203ENST00000460928 CLIP1P30622 1438 aa7.44□□□□□ -1.22
ATPAF1-203ENST00000460928 FOXO3O43524 673 aa7.43□□□□□ -1.22
ATPAF1-203ENST00000460928 PPP1R15AO75807 674 aaPredicted RBP7.43□□□□□ -1.22
ATPAF1-203ENST00000460928 WEE1P30291 646 aa7.43□□□□□ -1.22
ATPAF1-203ENST00000460928 TPSG1Q9NRR2 321 aa7.43□□□□□ -1.22
ATPAF1-203ENST00000460928 DNAJB12Q9NXW2 375 aaKnown RBP7.43□□□□□ -1.22
ATPAF1-203ENST00000460928 CEP162Q5TB80 1403 aa7.43□□□□□ -1.22
ATPAF1-203ENST00000460928 A0A0A0MRY4 1105 aa7.42□□□□□ -1.22
ATPAF1-203ENST00000460928 C9orf172C9J069 976 aa7.42□□□□□ -1.22
ATPAF1-203ENST00000460928 MAP3K6O95382 1288 aa7.42□□□□□ -1.22
ATPAF1-203ENST00000460928 ELNP15502 786 aa7.42□□□□□ -1.22
ATPAF1-203ENST00000460928 GRNP28799 593 aaKnown RBP7.42□□□□□ -1.22
ATPAF1-203ENST00000460928 LMOD1P29536 600 aaPredicted RBP7.42□□□□□ -1.22
ATPAF1-203ENST00000460928 INPP5BP32019 993 aa7.42□□□□□ -1.22
ATPAF1-203ENST00000460928 PCSK7Q16549 785 aa7.42□□□□□ -1.22
ATPAF1-203ENST00000460928 TRAPPC3LQ5T215 181 aa7.42□□□□□ -1.22
ATPAF1-203ENST00000460928 RETREG2Q8NC44 543 aa7.42□□□□□ -1.22
ATPAF1-203ENST00000460928 MYO19Q96H55 970 aa7.42□□□□□ -1.22
ATPAF1-203ENST00000460928 PNMA5Q96PV4 448 aa7.42□□□□□ -1.22
ATPAF1-203ENST00000460928 JPH1Q9HDC5 661 aaPredicted RBP7.42□□□□□ -1.22
ATPAF1-203ENST00000460928 NFKB1P19838 968 aa7.41□□□□□ -1.22
ATPAF1-203ENST00000460928 GRIK4Q16099 956 aa7.41□□□□□ -1.22
ATPAF1-203ENST00000460928 NAGPAQ9UK23 515 aa7.41□□□□□ -1.22
ATPAF1-203ENST00000460928 UACAQ9BZF9 1416 aa7.41□□□□□ -1.22
ATPAF1-203ENST00000460928 IDH3AP50213 366 aa7.4□□□□□ -1.22
ATPAF1-203ENST00000460928 AFF1P51825 1210 aaKnown RBP7.4□□□□□ -1.22
ATPAF1-203ENST00000460928 TBC1D8BQ0IIM8 1120 aa7.4□□□□□ -1.22
ATPAF1-203ENST00000460928 ADGRE1Q14246 886 aa7.4□□□□□ -1.22
ATPAF1-203ENST00000460928 PSAPL1Q6NUJ1 521 aa7.4□□□□□ -1.22
ATPAF1-203ENST00000460928 AEBP1Q8IUX7 1158 aa7.4□□□□□ -1.22
ATPAF1-203ENST00000460928 LENG1Q96BZ8 264 aaPredicted RBP7.4□□□□□ -1.22
ATPAF1-203ENST00000460928 QTRT2Q9H974 415 aaKnown RBP7.4□□□□□ -1.22
ATPAF1-203ENST00000460928 ABCA8O94911 1581 aa7.4□□□□□ -1.22
ATPAF1-203ENST00000460928 EFCAB5A4FU69 1503 aa7.39□□□□□ -1.23
ATPAF1-203ENST00000460928 ABCC2Q92887 1545 aa7.39□□□□□ -1.23
ATPAF1-203ENST00000460928 DYRK3O43781 588 aa7.39□□□□□ -1.23
ATPAF1-203ENST00000460928 LGR5O75473 907 aa7.39□□□□□ -1.23
ATPAF1-203ENST00000460928 SELPP16109 830 aa7.39□□□□□ -1.23
ATPAF1-203ENST00000460928 ARSDP51689 593 aa7.39□□□□□ -1.23
ATPAF1-203ENST00000460928 RAC1P63000 192 aa7.39□□□□□ -1.23
ATPAF1-203ENST00000460928 CFAP70Q5T0N1 1121 aa7.39□□□□□ -1.23
ATPAF1-203ENST00000460928 NUDT8Q8WV74 236 aa7.39□□□□□ -1.23
ATPAF1-203ENST00000460928 IGFLR1Q9H665 355 aa7.39□□□□□ -1.23
ATPAF1-203ENST00000460928 KLK14Q9P0G3 267 aa7.39□□□□□ -1.23
ATPAF1-203ENST00000460928 FRRS1LQ9P0K9 344 aa7.39□□□□□ -1.23
ATPAF1-203ENST00000460928 CCDC9Q9Y3X0 531 aaKnown RBP7.39□□□□□ -1.23
ATPAF1-203ENST00000460928 CDK13Q14004 1512 aaKnown RBP7.38□□□□□ -1.23
ATPAF1-203ENST00000460928 NUP153P49790 1475 aaKnown RBP7.38□□□□□ -1.23
ATPAF1-203ENST00000460928 RGS9O75916 674 aaPredicted RBP7.38□□□□□ -1.23
ATPAF1-203ENST00000460928 NRG1Q02297 640 aaPredicted RBP7.38□□□□□ -1.23
ATPAF1-203ENST00000460928 DGKZQ13574 1117 aa7.38□□□□□ -1.23
ATPAF1-203ENST00000460928 MBTPS1Q14703 1052 aa7.38□□□□□ -1.23
ATPAF1-203ENST00000460928 C11orf91Q3C1V1 193 aa7.38□□□□□ -1.23
ATPAF1-203ENST00000460928 ZMYM1Q5SVZ6 1142 aa7.38□□□□□ -1.23
ATPAF1-203ENST00000460928 TRPM4Q8TD43 1214 aa7.38□□□□□ -1.23
ATPAF1-203ENST00000460928 PSMG3-AS1Q96PY0 264 aa7.38□□□□□ -1.23
ATPAF1-203ENST00000460928 LRRIQ1Q96JM4 1722 aa7.38□□□□□ -1.23
ATPAF1-203ENST00000460928 ZCCHC11Q5TAX3 1644 aaKnown RBP7.38□□□□□ -1.23
ATPAF1-203ENST00000460928 RAPGEF6Q8TEU7 1601 aa7.38□□□□□ -1.23
ATPAF1-203ENST00000460928 PCF11O94913 1555 aaKnown RBP7.37□□□□□ -1.23
ATPAF1-203ENST00000460928 MICAL2O94851 1124 aa7.37□□□□□ -1.23
ATPAF1-203ENST00000460928 PDE4CQ08493 712 aa7.37□□□□□ -1.23
ATPAF1-203ENST00000460928 NPM2Q86SE8 214 aaKnown RBP7.37□□□□□ -1.23
ATPAF1-203ENST00000460928 TXNRD3Q86VQ6 643 aa7.37□□□□□ -1.23
ATPAF1-203ENST00000460928 FMR1NBQ8N0W7 255 aaPredicted RBP7.37□□□□□ -1.23
ATPAF1-203ENST00000460928 DTWD1Q8N5C7 304 aa7.37□□□□□ -1.23
ATPAF1-203ENST00000460928 TTC9Q92623 222 aa7.37□□□□□ -1.23
ATPAF1-203ENST00000460928 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.37□□□□□ -1.23
ATPAF1-203ENST00000460928 ZFATQ9P243 1243 aa7.37□□□□□ -1.23
ATPAF1-203ENST00000460928 ATP10BO94823 1461 aa7.36□□□□□ -1.23
ATPAF1-203ENST00000460928 EGFRP00533 1210 aa7.36□□□□□ -1.23
ATPAF1-203ENST00000460928 H2AFB1P0C5Y9 115 aa7.36□□□□□ -1.23
ATPAF1-203ENST00000460928 H2AFB2P0C5Z0 115 aa7.36□□□□□ -1.23
ATPAF1-203ENST00000460928 RFX1P22670 979 aa7.36□□□□□ -1.23
ATPAF1-203ENST00000460928 GPLD1P80108 840 aa7.36□□□□□ -1.23
ATPAF1-203ENST00000460928 DHX32Q7L7V1 743 aaKnown RBP7.36□□□□□ -1.23
ATPAF1-203ENST00000460928 FAM35AQ86V20 835 aa7.36□□□□□ -1.23
ATPAF1-203ENST00000460928 FAM200AQ8TCP9 573 aa7.36□□□□□ -1.23
ATPAF1-203ENST00000460928 VTI1AQ96AJ9 217 aa7.36□□□□□ -1.23
ATPAF1-203ENST00000460928 PBXIP1Q96AQ6 731 aa7.36□□□□□ -1.23
ATPAF1-203ENST00000460928 LPIN3Q9BQK8 851 aa7.36□□□□□ -1.23
ATPAF1-203ENST00000460928 UHRF1BP1LA0JNW5 1464 aa7.36□□□□□ -1.23
ATPAF1-203ENST00000460928 PPRC1Q5VV67 1664 aaKnown RBP7.35□□□□□ -1.23
ATPAF1-203ENST00000460928 GRIK5Q16478 980 aa7.35□□□□□ -1.23
ATPAF1-203ENST00000460928 MSL1Q68DK7 614 aa7.35□□□□□ -1.23
ATPAF1-203ENST00000460928 IFT43Q96FT9 208 aa7.35□□□□□ -1.23
ATPAF1-203ENST00000460928 KDM5BQ9UGL1 1544 aa7.35□□□□□ -1.23
ATPAF1-203ENST00000460928 ASXL2Q76L83 1435 aa7.35□□□□□ -1.23
ATPAF1-203ENST00000460928 ZBTB42B2RXF5 422 aa7.34□□□□□ -1.23
ATPAF1-203ENST00000460928 OPLAHO14841 1288 aa7.34□□□□□ -1.23
ATPAF1-203ENST00000460928 RARAP10276 462 aa7.34□□□□□ -1.23
ATPAF1-203ENST00000460928 TARSP26639 723 aaKnown RBP7.34□□□□□ -1.23
ATPAF1-203ENST00000460928 ARID4AP29374 1257 aaPredicted RBP7.34□□□□□ -1.23
ATPAF1-203ENST00000460928 NRLP54845 237 aa7.34□□□□□ -1.23
ATPAF1-203ENST00000460928 SWI5Q1ZZU3 235 aa7.34□□□□□ -1.23
ATPAF1-203ENST00000460928 PERM1Q5SV97 790 aa7.34□□□□□ -1.23
ATPAF1-203ENST00000460928 DMRTC2Q8IXT2 367 aaPredicted RBP7.34□□□□□ -1.23
ATPAF1-203ENST00000460928 LRFN2Q9ULH4 789 aa7.34□□□□□ -1.23
ATPAF1-203ENST00000460928 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.33□□□□□ -1.24
ATPAF1-203ENST00000460928 CPB1P15086 417 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms