RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	NOL7	Q9UMY1	257 aa	Known RBP	10.57	□□□□□ -0.72
SYNE1-215	ENST00000460912	NASP	P49321	788 aa	Predicted RBP	10.56	□□□□□ -0.72
SYNE1-215	ENST00000460912	CREB3L3	Q68CJ9	461 aa		10.56	□□□□□ -0.72
SYNE1-215	ENST00000460912	AMIGO3	Q86WK7	504 aa		10.56	□□□□□ -0.72
SYNE1-215	ENST00000460912	SH3TC1	Q8TE82	1336 aa		10.56	□□□□□ -0.72
SYNE1-215	ENST00000460912	NMI	Q13287	307 aa	Predicted RBP	10.56	□□□□□ -0.72
SYNE1-215	ENST00000460912	USP48	Q86UV5	1035 aa		10.56	□□□□□ -0.72
SYNE1-215	ENST00000460912	TRIM6-TRIM34	B2RNG4	842 aa		10.56	□□□□□ -0.72
SYNE1-215	ENST00000460912	MBD3	O95983	291 aa		10.56	□□□□□ -0.72
SYNE1-215	ENST00000460912	MCC	P23508	829 aa		10.56	□□□□□ -0.72
SYNE1-215	ENST00000460912	XAGE3	Q8WTP9	111 aa		10.56	□□□□□ -0.72
SYNE1-215	ENST00000460912	GPR108	Q9NPR9	543 aa		10.56	□□□□□ -0.72
SYNE1-215	ENST00000460912	WDR33	Q9C0J8	1336 aa	Known RBP	10.56	□□□□□ -0.72
SYNE1-215	ENST00000460912	RC3H1	Q5TC82	1133 aa	Known RBP	10.55	□□□□□ -0.72
SYNE1-215	ENST00000460912	NAP1L5	Q96NT1	182 aa	Predicted RBP	10.55	□□□□□ -0.72
SYNE1-215	ENST00000460912	HAUS7	Q99871	368 aa		10.55	□□□□□ -0.72
SYNE1-215	ENST00000460912	ELP1	O95163	1332 aa		10.55	□□□□□ -0.72
SYNE1-215	ENST00000460912	CWC27	Q6UX04	472 aa	Known RBP	10.55	□□□□□ -0.72
SYNE1-215	ENST00000460912	LINC00116	Q8NCU8	138 aa		10.55	□□□□□ -0.72
SYNE1-215	ENST00000460912	F13A1	P00488	732 aa		10.55	□□□□□ -0.72
SYNE1-215	ENST00000460912	CPA1	P15085	419 aa		10.55	□□□□□ -0.72
SYNE1-215	ENST00000460912	EIF5	P55010	431 aa	Known RBP	10.55	□□□□□ -0.72
SYNE1-215	ENST00000460912	PLBD2	Q8NHP8	589 aa		10.55	□□□□□ -0.72
SYNE1-215	ENST00000460912	TNNI3K	Q59H18	835 aa		10.54	□□□□□ -0.72
SYNE1-215	ENST00000460912	COPS6	Q7L5N1	327 aa		10.54	□□□□□ -0.72
SYNE1-215	ENST00000460912	CLASRP	Q8N2M8	674 aa	Known RBP	10.54	□□□□□ -0.72
SYNE1-215	ENST00000460912	FPGT-TNNI3K	V9GXZ4	949 aa		10.54	□□□□□ -0.72
SYNE1-215	ENST00000460912	EVC	P57679	992 aa		10.54	□□□□□ -0.72
SYNE1-215	ENST00000460912	TMOD3	Q9NYL9	352 aa		10.54	□□□□□ -0.72
SYNE1-215	ENST00000460912	RBM8A	Q9Y5S9	174 aa	Known RBP	10.54	□□□□□ -0.72
SYNE1-215	ENST00000460912	KLHDC4	Q8TBB5	520 aa		10.54	□□□□□ -0.72
SYNE1-215	ENST00000460912	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	10.54	□□□□□ -0.72
SYNE1-215	ENST00000460912	SH2B1	Q9NRF2	756 aa	Predicted RBP	10.54	□□□□□ -0.72
SYNE1-215	ENST00000460912	ADD1	P35611	737 aa	Known RBP	10.53	□□□□□ -0.72
SYNE1-215	ENST00000460912	TRIM28	Q13263	835 aa	Known RBP	10.53	□□□□□ -0.72
SYNE1-215	ENST00000460912	DDX54	Q8TDD1	881 aa	Known RBP	10.53	□□□□□ -0.72
SYNE1-215	ENST00000460912	ISCA1	Q9BUE6	129 aa		10.53	□□□□□ -0.72
SYNE1-215	ENST00000460912	LRRC4B	Q9NT99	713 aa		10.53	□□□□□ -0.72
SYNE1-215	ENST00000460912	GOLGA6L22	H0YM25	854 aa		10.53	□□□□□ -0.72
SYNE1-215	ENST00000460912	AP5Z1	O43299	807 aa		10.53	□□□□□ -0.72
SYNE1-215	ENST00000460912	STX6	O43752	255 aa		10.53	□□□□□ -0.72
SYNE1-215	ENST00000460912	RPS6KB1	P23443	525 aa		10.53	□□□□□ -0.72
SYNE1-215	ENST00000460912	TERF1	P54274	439 aa		10.53	□□□□□ -0.72
SYNE1-215	ENST00000460912	CHGB	P05060	677 aa		10.53	□□□□□ -0.72
SYNE1-215	ENST00000460912	ANKRD13D	Q6ZTN6	518 aa		10.53	□□□□□ -0.72
SYNE1-215	ENST00000460912	AACS	Q86V21	672 aa		10.53	□□□□□ -0.72
SYNE1-215	ENST00000460912	SMARCC2	Q8TAQ2	1214 aa		10.53	□□□□□ -0.72
SYNE1-215	ENST00000460912	PLA2G12B	Q9BX93	195 aa		10.53	□□□□□ -0.72
SYNE1-215	ENST00000460912	HIP1	O00291	1037 aa		10.52	□□□□□ -0.72
SYNE1-215	ENST00000460912	PLSCR1	O15162	318 aa		10.52	□□□□□ -0.72
SYNE1-215	ENST00000460912	EXOSC10	Q01780	885 aa	Known RBP	10.52	□□□□□ -0.72
SYNE1-215	ENST00000460912	STOX1	Q6ZVD7	989 aa		10.52	□□□□□ -0.72
SYNE1-215	ENST00000460912	ZSCAN30	Q86W11	494 aa		10.52	□□□□□ -0.72
SYNE1-215	ENST00000460912	AKT1S1	Q96B36	256 aa		10.52	□□□□□ -0.72
SYNE1-215	ENST00000460912	ZSCAN31	Q96LW9	406 aa	Predicted RBP	10.52	□□□□□ -0.72
SYNE1-215	ENST00000460912	HDAC5	Q9UQL6	1122 aa		10.52	□□□□□ -0.72
SYNE1-215	ENST00000460912	CAST	P20810	708 aa	Known RBP	10.52	□□□□□ -0.73
SYNE1-215	ENST00000460912	SYCE3	A1L190	88 aa		10.52	□□□□□ -0.73
SYNE1-215	ENST00000460912	CIAO1	O76071	339 aa		10.52	□□□□□ -0.73
SYNE1-215	ENST00000460912	DDX58	O95786	925 aa	Known RBP	10.52	□□□□□ -0.73
SYNE1-215	ENST00000460912	BCL2L12	Q9HB09	334 aa		10.52	□□□□□ -0.73
SYNE1-215	ENST00000460912	CNPY2	Q9Y2B0	182 aa		10.52	□□□□□ -0.73
SYNE1-215	ENST00000460912	LAMB1	P07942	1786 aa		10.51	□□□□□ -0.73
SYNE1-215	ENST00000460912	MAST2	Q6P0Q8	1798 aa		10.51	□□□□□ -0.73
SYNE1-215	ENST00000460912	ABCC12	Q96J65	1359 aa		10.51	□□□□□ -0.73
SYNE1-215	ENST00000460912	NEDD4	P46934	1319 aa		10.51	□□□□□ -0.73
SYNE1-215	ENST00000460912	OFD1	O75665	1012 aa		10.51	□□□□□ -0.73
SYNE1-215	ENST00000460912	HSP90AA1	P07900	732 aa	Known RBP	10.51	□□□□□ -0.73
SYNE1-215	ENST00000460912	TEX13A	Q9BXU3	409 aa	Predicted RBP	10.51	□□□□□ -0.73
SYNE1-215	ENST00000460912	SNED1	Q8TER0	1413 aa		10.51	□□□□□ -0.73
SYNE1-215	ENST00000460912	CACNA1S	Q13698	1873 aa		10.51	□□□□□ -0.73
SYNE1-215	ENST00000460912	PRPF40B	Q6NWY9	871 aa	Known RBP	10.51	□□□□□ -0.73
SYNE1-215	ENST00000460912	C9orf78	Q9NZ63	289 aa	Predicted RBP	10.51	□□□□□ -0.73
SYNE1-215	ENST00000460912	HMG20B	Q9P0W2	317 aa		10.51	□□□□□ -0.73
SYNE1-215	ENST00000460912	LOC102724428	A0A0B4J2F2	783 aa		10.51	□□□□□ -0.73
SYNE1-215	ENST00000460912	IL6ST	P40189	918 aa	Predicted RBP	10.51	□□□□□ -0.73
SYNE1-215	ENST00000460912	SIK1	P57059	783 aa		10.51	□□□□□ -0.73
SYNE1-215	ENST00000460912	UBE2H	P62256	183 aa		10.51	□□□□□ -0.73
SYNE1-215	ENST00000460912	TFCP2	Q12800	502 aa		10.51	□□□□□ -0.73
SYNE1-215	ENST00000460912	FOCAD	Q5VW36	1801 aa		10.5	□□□□□ -0.73
SYNE1-215	ENST00000460912	CAMTA2	O94983	1202 aa		10.5	□□□□□ -0.73
SYNE1-215	ENST00000460912	CTDNEP1	O95476	244 aa		10.5	□□□□□ -0.73
SYNE1-215	ENST00000460912	DNAJC10	Q8IXB1	793 aa		10.5	□□□□□ -0.73
SYNE1-215	ENST00000460912	ZNF34	Q8IZ26	560 aa		10.5	□□□□□ -0.73
SYNE1-215	ENST00000460912	RUFY2	Q8WXA3	655 aa		10.5	□□□□□ -0.73
SYNE1-215	ENST00000460912	MYD88	Q99836	296 aa		10.5	□□□□□ -0.73
SYNE1-215	ENST00000460912	PDRG1	Q9NUG6	133 aa		10.5	□□□□□ -0.73
SYNE1-215	ENST00000460912	MYH13	Q9UKX3	1938 aa		10.5	□□□□□ -0.73
SYNE1-215	ENST00000460912	ERVV-1	B6SEH8	477 aa		10.5	□□□□□ -0.73
SYNE1-215	ENST00000460912	CSF1R	P07333	972 aa		10.5	□□□□□ -0.73
SYNE1-215	ENST00000460912	MCM5	P33992	734 aa		10.5	□□□□□ -0.73
SYNE1-215	ENST00000460912	UVSSA	Q2YD98	709 aa		10.5	□□□□□ -0.73
SYNE1-215	ENST00000460912	KRT27	Q7Z3Y8	459 aa		10.5	□□□□□ -0.73
SYNE1-215	ENST00000460912	CARMIL3	Q8ND23	1372 aa		10.5	□□□□□ -0.73
SYNE1-215	ENST00000460912	DUOX1	Q9NRD9	1551 aa		10.5	□□□□□ -0.73
SYNE1-215	ENST00000460912	GJB2	P29033	226 aa		10.49	□□□□□ -0.73
SYNE1-215	ENST00000460912	CCDC8	Q9H0W5	538 aa	Predicted RBP	10.49	□□□□□ -0.73
SYNE1-215	ENST00000460912	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	10.49	□□□□□ -0.73
SYNE1-215	ENST00000460912	ARFGEF1	Q9Y6D6	1849 aa		10.49	□□□□□ -0.73
SYNE1-215	ENST00000460912	PDIA4	P13667	645 aa	Known RBP	10.49	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms