RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 RASSF4Q9H2L5 321 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 ZBTB3Q9H5J0 574 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 USP54Q70EL1 1684 aa7.21□□□□□ -1.25
VPS13D-202ENST00000460333 ZRSR2Q15696 482 aaKnown RBP7.21□□□□□ -1.25
VPS13D-202ENST00000460333 CCDC158Q5M9N0 1113 aa7.21□□□□□ -1.25
VPS13D-202ENST00000460333 CFAP45Q9UL16 551 aa7.21□□□□□ -1.25
VPS13D-202ENST00000460333 NEURL1BA8MQ27 555 aa7.21□□□□□ -1.26
VPS13D-202ENST00000460333 ATP5J2-PTCD1G3V325 749 aa7.21□□□□□ -1.26
VPS13D-202ENST00000460333 USP16Q9Y5T5 823 aa7.21□□□□□ -1.26
VPS13D-202ENST00000460333 EPB41L2O43491 1005 aaKnown RBP7.21□□□□□ -1.26
VPS13D-202ENST00000460333 SEC24BO95487 1268 aa7.21□□□□□ -1.26
VPS13D-202ENST00000460333 MAPK8IP2Q13387 824 aaPredicted RBP7.21□□□□□ -1.26
VPS13D-202ENST00000460333 VPS37DQ86XT2 251 aa7.21□□□□□ -1.26
VPS13D-202ENST00000460333 CCDC102AQ96A19 550 aa7.21□□□□□ -1.26
VPS13D-202ENST00000460333 PPP1R9BQ96SB3 815 aa7.21□□□□□ -1.26
VPS13D-202ENST00000460333 SRRTQ9BXP5 876 aaKnown RBP7.21□□□□□ -1.26
VPS13D-202ENST00000460333 TRIM34Q9BYJ4 488 aa7.21□□□□□ -1.26
VPS13D-202ENST00000460333 DDX19AQ9NUU7 478 aaKnown RBP7.21□□□□□ -1.26
VPS13D-202ENST00000460333 SFPQP23246 707 aaKnown RBP eCLIP7.2□□□□□ -1.26
VPS13D-202ENST00000460333 ZNF445P59923 1031 aa7.2□□□□□ -1.26
VPS13D-202ENST00000460333 BICC1Q9H694 974 aaKnown RBP7.2□□□□□ -1.26
VPS13D-202ENST00000460333 CLIP2Q9UDT6 1046 aa7.2□□□□□ -1.26
VPS13D-202ENST00000460333 PXDNQ92626 1479 aa7.2□□□□□ -1.26
VPS13D-202ENST00000460333 CCDC91Q7Z6B0 441 aa7.2□□□□□ -1.26
VPS13D-202ENST00000460333 GPATCH11Q8N954 259 aa7.2□□□□□ -1.26
VPS13D-202ENST00000460333 RASSF8Q8NHQ8 419 aa7.2□□□□□ -1.26
VPS13D-202ENST00000460333 CERKQ8TCT0 537 aa7.2□□□□□ -1.26
VPS13D-202ENST00000460333 FBXW7Q969H0 707 aa7.2□□□□□ -1.26
VPS13D-202ENST00000460333 CYP46A1Q9Y6A2 500 aa7.2□□□□□ -1.26
VPS13D-202ENST00000460333 GOLGA6L10A6NI86 522 aa7.2□□□□□ -1.26
VPS13D-202ENST00000460333 CPLX1O14810 134 aa7.2□□□□□ -1.26
VPS13D-202ENST00000460333 ANAPC15P60006 121 aa7.2□□□□□ -1.26
VPS13D-202ENST00000460333 IFIT5Q13325 482 aaKnown RBP7.2□□□□□ -1.26
VPS13D-202ENST00000460333 MPNDQ8N594 471 aa7.2□□□□□ -1.26
VPS13D-202ENST00000460333 SPATA32Q96LK8 384 aa7.2□□□□□ -1.26
VPS13D-202ENST00000460333 SCAND2PQ9GZW5 306 aaPredicted RBP7.2□□□□□ -1.26
VPS13D-202ENST00000460333 INCENPQ9NQS7 918 aa7.2□□□□□ -1.26
VPS13D-202ENST00000460333 TUBB4BP68371 445 aa7.2□□□□□ -1.26
VPS13D-202ENST00000460333 POLA2Q14181 598 aa7.2□□□□□ -1.26
VPS13D-202ENST00000460333 NKX1-1Q15270 411 aaPredicted RBP7.2□□□□□ -1.26
VPS13D-202ENST00000460333 PROSER3Q2NL68 480 aa7.2□□□□□ -1.26
VPS13D-202ENST00000460333 C16orf45Q96MC5 204 aaPredicted RBP7.2□□□□□ -1.26
VPS13D-202ENST00000460333 ANO10Q9NW15 660 aa7.2□□□□□ -1.26
VPS13D-202ENST00000460333 STAP2Q9UGK3 403 aa7.2□□□□□ -1.26
VPS13D-202ENST00000460333 SERPINC1P01008 464 aa7.19□□□□□ -1.26
VPS13D-202ENST00000460333 IL15P40933 162 aaPredicted RBP7.19□□□□□ -1.26
VPS13D-202ENST00000460333 UBE2HP62256 183 aa7.19□□□□□ -1.26
VPS13D-202ENST00000460333 MTX1Q13505 466 aa7.19□□□□□ -1.26
VPS13D-202ENST00000460333 JMYQ8N9B5 988 aa7.19□□□□□ -1.26
VPS13D-202ENST00000460333 IPO4Q8TEX9 1081 aaKnown RBP7.19□□□□□ -1.26
VPS13D-202ENST00000460333 SUCLG2Q96I99 432 aa7.19□□□□□ -1.26
VPS13D-202ENST00000460333 ESYT1Q9BSJ8 1104 aa7.19□□□□□ -1.26
VPS13D-202ENST00000460333 CNNM1Q9NRU3 951 aa7.19□□□□□ -1.26
VPS13D-202ENST00000460333 TTC31Q49AM3 519 aaPredicted RBP7.19□□□□□ -1.26
VPS13D-202ENST00000460333 CCDC150Q8NCX0 1101 aa7.19□□□□□ -1.26
VPS13D-202ENST00000460333 UPF3BQ9BZI7 483 aaKnown RBP7.19□□□□□ -1.26
VPS13D-202ENST00000460333 A0A1B0GUL7 405 aa7.19□□□□□ -1.26
VPS13D-202ENST00000460333 CEP89Q96ST8 783 aa7.19□□□□□ -1.26
VPS13D-202ENST00000460333 FSD2A1L4K1 749 aa7.19□□□□□ -1.26
VPS13D-202ENST00000460333 POLR3GO15318 223 aaPredicted RBP7.19□□□□□ -1.26
VPS13D-202ENST00000460333 ZPR1O75312 459 aa7.19□□□□□ -1.26
VPS13D-202ENST00000460333 CASQ1P31415 396 aa7.19□□□□□ -1.26
VPS13D-202ENST00000460333 TTC39AQ5SRH9 613 aa7.19□□□□□ -1.26
VPS13D-202ENST00000460333 LMBR1LQ6UX01 489 aa7.19□□□□□ -1.26
VPS13D-202ENST00000460333 TRMT112Q9UI30 125 aaKnown RBP7.19□□□□□ -1.26
VPS13D-202ENST00000460333 MEGF6O75095 1541 aa7.19□□□□□ -1.26
VPS13D-202ENST00000460333 ANKRD18BA2A2Z9 1011 aa7.18□□□□□ -1.26
VPS13D-202ENST00000460333 PATL2C9JE40 543 aaKnown RBP7.18□□□□□ -1.26
VPS13D-202ENST00000460333 CLGNO14967 610 aa7.18□□□□□ -1.26
VPS13D-202ENST00000460333 WDHD1O75717 1129 aaPredicted RBP7.18□□□□□ -1.26
VPS13D-202ENST00000460333 SLU7O95391 586 aaKnown RBP7.18□□□□□ -1.26
VPS13D-202ENST00000460333 LARP1BQ659C4 914 aaKnown RBP7.18□□□□□ -1.26
VPS13D-202ENST00000460333 PPFIBP1Q86W92 1011 aa7.18□□□□□ -1.26
VPS13D-202ENST00000460333 PIBF1Q8WXW3 757 aa7.18□□□□□ -1.26
VPS13D-202ENST00000460333 SH2B1Q9NRF2 756 aaPredicted RBP7.18□□□□□ -1.26
VPS13D-202ENST00000460333 MAP4K4O95819 1239 aaPredicted RBP7.18□□□□□ -1.26
VPS13D-202ENST00000460333 A1BGP04217 495 aa7.18□□□□□ -1.26
VPS13D-202ENST00000460333 RXRBP28702 533 aa7.18□□□□□ -1.26
VPS13D-202ENST00000460333 SNW1Q13573 536 aaKnown RBP7.18□□□□□ -1.26
VPS13D-202ENST00000460333 ZSCAN25Q6NSZ9 544 aa7.18□□□□□ -1.26
VPS13D-202ENST00000460333 CWC27Q6UX04 472 aaKnown RBP7.18□□□□□ -1.26
VPS13D-202ENST00000460333 CRACR2AQ9BSW2 395 aa7.18□□□□□ -1.26
VPS13D-202ENST00000460333 CCDC8Q9H0W5 538 aaPredicted RBP7.18□□□□□ -1.26
VPS13D-202ENST00000460333 ADCY9O60503 1353 aa7.18□□□□□ -1.26
VPS13D-202ENST00000460333 MED1Q15648 1581 aaPredicted RBP7.18□□□□□ -1.26
VPS13D-202ENST00000460333 FAM208AQ9UK61 1670 aaKnown RBP7.18□□□□□ -1.26
VPS13D-202ENST00000460333 ATP6V1AP38606 617 aa7.18□□□□□ -1.26
VPS13D-202ENST00000460333 OTUD7AQ8TE49 926 aaPredicted RBP7.18□□□□□ -1.26
VPS13D-202ENST00000460333 USP26Q9BXU7 913 aa7.18□□□□□ -1.26
VPS13D-202ENST00000460333 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.18□□□□□ -1.263e-7■■■■□ 26.2
VPS13D-202ENST00000460333 USP21Q9UK80 565 aa7.18□□□□□ -1.26
VPS13D-202ENST00000460333 RGS12O14924 1447 aa7.18□□□□□ -1.26
VPS13D-202ENST00000460333 CACNA1FO60840 1977 aa7.18□□□□□ -1.26
VPS13D-202ENST00000460333 PRAMEF22A3QJZ6 481 aa7.18□□□□□ -1.26
VPS13D-202ENST00000460333 GSPT1P15170 499 aaKnown RBP7.18□□□□□ -1.26
VPS13D-202ENST00000460333 CHMLP26374 656 aa7.18□□□□□ -1.26
VPS13D-202ENST00000460333 LMAN1P49257 510 aa7.18□□□□□ -1.26
VPS13D-202ENST00000460333 KRT32Q14532 448 aa7.18□□□□□ -1.26
VPS13D-202ENST00000460333 SAFBQ15424 915 aaKnown RBP eCLIP7.18□□□□□ -1.26
VPS13D-202ENST00000460333 PCMTD1Q96MG8 357 aaPredicted RBP7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms