RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 SEC62Q99442 399 aaKnown RBP17.94■□□□□ 0.46
LDLR-202ENST00000455727 DSCC1Q9BVC3 393 aa17.94■□□□□ 0.46
LDLR-202ENST00000455727 AKAP2Q9Y2D5 859 aa17.94■□□□□ 0.46
LDLR-202ENST00000455727 GOLIM4O00461 696 aa17.93■□□□□ 0.46
LDLR-202ENST00000455727 ZMYM1Q5SVZ6 1142 aa17.93■□□□□ 0.46
LDLR-202ENST00000455727 GIGYF2Q6Y7W6 1299 aaKnown RBP17.93■□□□□ 0.46
LDLR-202ENST00000455727 MAP3K15Q6ZN16 1313 aa17.93■□□□□ 0.46
LDLR-202ENST00000455727 BCL9O00512 1426 aa17.93■□□□□ 0.46
LDLR-202ENST00000455727 CYP21A2P08686 494 aa17.93■□□□□ 0.46
LDLR-202ENST00000455727 HMGB1P09429 215 aaKnown RBP17.93■□□□□ 0.46
LDLR-202ENST00000455727 IFIT1P09914 478 aaKnown RBP17.93■□□□□ 0.46
LDLR-202ENST00000455727 LARP1BQ659C4 914 aaKnown RBP17.93■□□□□ 0.46
LDLR-202ENST00000455727 CCDC129Q6ZRS4 1044 aa17.93■□□□□ 0.46
LDLR-202ENST00000455727 CDHR2Q9BYE9 1310 aa17.93■□□□□ 0.46
LDLR-202ENST00000455727 PDLIM2Q96JY6 352 aa17.92■□□□□ 0.46
LDLR-202ENST00000455727 PUS3Q9BZE2 481 aaKnown RBP17.92■□□□□ 0.46
LDLR-202ENST00000455727 ANKRD36CQ5JPF3 1778 aa17.92■□□□□ 0.46
LDLR-202ENST00000455727 HSP90AB3PQ58FF7 597 aa17.92■□□□□ 0.46
LDLR-202ENST00000455727 LAMA4Q16363 1823 aa17.91■□□□□ 0.46
LDLR-202ENST00000455727 COL22A1Q8NFW1 1626 aaPredicted RBP17.91■□□□□ 0.46
LDLR-202ENST00000455727 LETM1O95202 739 aaPredicted RBP17.91■□□□□ 0.46
LDLR-202ENST00000455727 CHGBP05060 677 aa17.91■□□□□ 0.46
LDLR-202ENST00000455727 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.91■□□□□ 0.46
LDLR-202ENST00000455727 LRRFIP1Q32MZ4 808 aaKnown RBP17.9■□□□□ 0.46
LDLR-202ENST00000455727 HS1BP3Q53T59 392 aa17.9■□□□□ 0.46
LDLR-202ENST00000455727 CCDC183Q5T5S1 534 aa17.9■□□□□ 0.46
LDLR-202ENST00000455727 TCEANC2Q96MN5 208 aa17.9■□□□□ 0.46
LDLR-202ENST00000455727 TSPY26PQ9H489 355 aa17.9■□□□□ 0.46
LDLR-202ENST00000455727 RNF113AO15541 343 aaKnown RBP17.9■□□□□ 0.46
LDLR-202ENST00000455727 CCDC158Q5M9N0 1113 aa17.9■□□□□ 0.46
LDLR-202ENST00000455727 FAM89AQ96GI7 184 aa17.9■□□□□ 0.46
LDLR-202ENST00000455727 MYH3P11055 1940 aa17.9■□□□□ 0.46
LDLR-202ENST00000455727 ABCC12Q96J65 1359 aa17.89■□□□□ 0.46
LDLR-202ENST00000455727 VPS37CA5D8V6 355 aaPredicted RBP17.89■□□□□ 0.46
LDLR-202ENST00000455727 CYP19A1P11511 503 aaPredicted RBP17.89■□□□□ 0.46
LDLR-202ENST00000455727 GTF3C6Q969F1 213 aa17.89■□□□□ 0.46
LDLR-202ENST00000455727 ZNF330Q9Y3S2 320 aaPredicted RBP17.89■□□□□ 0.46
LDLR-202ENST00000455727 CCDC9Q9Y3X0 531 aaKnown RBP17.89■□□□□ 0.46
LDLR-202ENST00000455727 WNK3Q9BYP7 1800 aa17.89■□□□□ 0.45
LDLR-202ENST00000455727 DNM1Q05193 864 aaKnown RBP17.89■□□□□ 0.45
LDLR-202ENST00000455727 IFIT5Q13325 482 aaKnown RBP17.89■□□□□ 0.45
LDLR-202ENST00000455727 Q6ZUG5 572 aa17.88■□□□□ 0.45
LDLR-202ENST00000455727 NLRP10Q86W26 655 aa17.88■□□□□ 0.45
LDLR-202ENST00000455727 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.88■□□□□ 0.45
LDLR-202ENST00000455727 EXOC5O00471 708 aa17.88■□□□□ 0.45
LDLR-202ENST00000455727 FIBPO43427 364 aa17.88■□□□□ 0.45
LDLR-202ENST00000455727 DHX32Q7L7V1 743 aaKnown RBP17.88■□□□□ 0.45
LDLR-202ENST00000455727 NUP98P52948 1817 aa17.88■□□□□ 0.45
LDLR-202ENST00000455727 ZFYP08048 801 aaPredicted RBP17.87■□□□□ 0.45
LDLR-202ENST00000455727 HSPD1P10809 573 aaKnown RBP17.87■□□□□ 0.45
LDLR-202ENST00000455727 FAM184AQ8NB25 1140 aa17.87■□□□□ 0.45
LDLR-202ENST00000455727 XAGE2Q96GT9 111 aa17.87■□□□□ 0.45
LDLR-202ENST00000455727 COL16A1Q07092 1604 aaPredicted RBP17.87■□□□□ 0.45
LDLR-202ENST00000455727 AHDC1Q5TGY3 1603 aaPredicted RBP17.87■□□□□ 0.45
LDLR-202ENST00000455727 MAST3O60307 1309 aa17.87■□□□□ 0.45
LDLR-202ENST00000455727 ELP1O95163 1332 aa17.87■□□□□ 0.45
LDLR-202ENST00000455727 TAF7LQ5H9L4 462 aa17.87■□□□□ 0.45
LDLR-202ENST00000455727 SLC4A9Q96Q91 983 aa17.87■□□□□ 0.45
LDLR-202ENST00000455727 AGXT2Q9BYV1 514 aa17.87■□□□□ 0.45
LDLR-202ENST00000455727 ERVV-1B6SEH8 477 aa17.86■□□□□ 0.45
LDLR-202ENST00000455727 KRT85P78386 507 aa17.86■□□□□ 0.45
LDLR-202ENST00000455727 HLFQ16534 295 aa17.86■□□□□ 0.45
LDLR-202ENST00000455727 TTC39AQ5SRH9 613 aa17.86■□□□□ 0.45
LDLR-202ENST00000455727 GORABQ5T7V8 394 aa17.86■□□□□ 0.45
LDLR-202ENST00000455727 STOX1Q6ZVD7 989 aa17.86■□□□□ 0.45
LDLR-202ENST00000455727 LLPHQ9BRT6 129 aaKnown RBP17.86■□□□□ 0.45
LDLR-202ENST00000455727 KAT6BQ8WYB5 2073 aa17.86■□□□□ 0.45
LDLR-202ENST00000455727 MYH7P12883 1935 aa17.86■□□□□ 0.45
LDLR-202ENST00000455727 EXOSC10Q01780 885 aaKnown RBP17.86■□□□□ 0.45
LDLR-202ENST00000455727 CDC37L1Q7L3B6 337 aa17.86■□□□□ 0.45
LDLR-202ENST00000455727 TTLL11Q8NHH1 800 aa17.86■□□□□ 0.45
LDLR-202ENST00000455727 RIPOR2Q9Y4F9 1068 aa17.86■□□□□ 0.45
LDLR-202ENST00000455727 ROBO1Q9Y6N7 1651 aa17.85■□□□□ 0.45
LDLR-202ENST00000455727 IL6STP40189 918 aaPredicted RBP17.84■□□□□ 0.45
LDLR-202ENST00000455727 STK3Q13188 491 aa17.84■□□□□ 0.45
LDLR-202ENST00000455727 UVSSAQ2YD98 709 aa17.84■□□□□ 0.45
LDLR-202ENST00000455727 ZSCAN30Q86W11 494 aa17.84■□□□□ 0.45
LDLR-202ENST00000455727 PFKFB2O60825 505 aa17.84■□□□□ 0.45
LDLR-202ENST00000455727 ADORA1P30542 326 aa17.84■□□□□ 0.45
LDLR-202ENST00000455727 FKBP4Q02790 459 aaKnown RBP eCLIP17.84■□□□□ 0.45
LDLR-202ENST00000455727 SLFNL1Q499Z3 407 aa17.84■□□□□ 0.45
LDLR-202ENST00000455727 FBXL16Q8N461 479 aa17.84■□□□□ 0.45
LDLR-202ENST00000455727 ZNF512BQ96KM6 892 aaPredicted RBP17.84■□□□□ 0.45
LDLR-202ENST00000455727 CDCA7Q9BWT1 371 aaPredicted RBP17.84■□□□□ 0.45
LDLR-202ENST00000455727 RIC1Q4ADV7 1423 aa17.84■□□□□ 0.45
LDLR-202ENST00000455727 DTNBO60941 627 aa17.83■□□□□ 0.45
LDLR-202ENST00000455727 CTSWP56202 376 aa17.83■□□□□ 0.45
LDLR-202ENST00000455727 SMARCC2Q8TAQ2 1214 aa17.83■□□□□ 0.45
LDLR-202ENST00000455727 BRF1Q92994 677 aa17.83■□□□□ 0.45
LDLR-202ENST00000455727 SCAND2PQ9GZW5 306 aaPredicted RBP17.83■□□□□ 0.45
LDLR-202ENST00000455727 E7EWF7 191 aa17.83■□□□□ 0.44
LDLR-202ENST00000455727 OSBP2Q969R2 916 aa17.83■□□□□ 0.44
LDLR-202ENST00000455727 CHMP4CQ96CF2 233 aa17.83■□□□□ 0.44
LDLR-202ENST00000455727 CTNNA3Q9UI47 895 aa17.83■□□□□ 0.44
LDLR-202ENST00000455727 ZBTB1Q9Y2K1 713 aa17.83■□□□□ 0.44
LDLR-202ENST00000455727 AKAP11Q9UKA4 1901 aa17.83■□□□□ 0.44
LDLR-202ENST00000455727 ANKRD18BA2A2Z9 1011 aa17.82■□□□□ 0.44
LDLR-202ENST00000455727 M0R2C6 588 aa17.82■□□□□ 0.44
LDLR-202ENST00000455727 HSP90B1P14625 803 aaKnown RBP17.82■□□□□ 0.44
LDLR-202ENST00000455727 ITGA6P23229 1130 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 163.1 ms