RNA–Protein interactions for RNA: ENST00000454134.1

NCKIPSD-208, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 3

Gene NCKIPSD, Length 998 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-208ENST00000454134 PODXL2Q9NZ53 605 aa20.99■□□□□ 0.95
NCKIPSD-208ENST00000454134 MKRN1Q9UHC7 482 aaKnown RBP20.99■□□□□ 0.95
NCKIPSD-208ENST00000454134 MYH3P11055 1940 aa20.98■□□□□ 0.95
NCKIPSD-208ENST00000454134 CDC5LQ99459 802 aaKnown RBP20.98■□□□□ 0.95
NCKIPSD-208ENST00000454134 KCNQ5Q9NR82 932 aa20.98■□□□□ 0.95
NCKIPSD-208ENST00000454134 ADARB2Q9NS39 739 aaKnown RBP20.98■□□□□ 0.95
NCKIPSD-208ENST00000454134 GGA1Q9UJY5 639 aa20.98■□□□□ 0.95
NCKIPSD-208ENST00000454134 ZBTB12Q9Y330 459 aaPredicted RBP20.98■□□□□ 0.95
NCKIPSD-208ENST00000454134 SHTN1A0MZ66 631 aa20.97■□□□□ 0.95
NCKIPSD-208ENST00000454134 ECE2O60344 883 aa20.97■□□□□ 0.95
NCKIPSD-208ENST00000454134 CASP7P55210 303 aa20.97■□□□□ 0.95
NCKIPSD-208ENST00000454134 ZC3H12CQ9C0D7 883 aaKnown RBP20.97■□□□□ 0.95
NCKIPSD-208ENST00000454134 TMEM88BA6NKF7 163 aa20.96■□□□□ 0.95
NCKIPSD-208ENST00000454134 PSMD14O00487 310 aa20.96■□□□□ 0.95
NCKIPSD-208ENST00000454134 FMR1Q06787 632 aaKnown RBP eCLIP20.96■□□□□ 0.95
NCKIPSD-208ENST00000454134 SPEF2Q9C093 1822 aa20.96■□□□□ 0.95
NCKIPSD-208ENST00000454134 WTIPA6NIX2 430 aaPredicted RBP20.95■□□□□ 0.94
NCKIPSD-208ENST00000454134 CNOT7Q9UIV1 285 aaKnown RBP20.95■□□□□ 0.94
NCKIPSD-208ENST00000454134 RTL9Q8NET4 1388 aa20.95■□□□□ 0.94
NCKIPSD-208ENST00000454134 FAM161AQ3B820 660 aa20.94■□□□□ 0.94
NCKIPSD-208ENST00000454134 BEND3Q5T5X7 828 aa20.94■□□□□ 0.94
NCKIPSD-208ENST00000454134 PLA2G12BQ9BX93 195 aa20.94■□□□□ 0.94
NCKIPSD-208ENST00000454134 XDHP47989 1333 aa20.94■□□□□ 0.94
NCKIPSD-208ENST00000454134 G3V3G9 751 aa20.93■□□□□ 0.94
NCKIPSD-208ENST00000454134 TRAF5O00463 557 aa20.93■□□□□ 0.94
NCKIPSD-208ENST00000454134 HIRAP54198 1017 aaPredicted RBP20.93■□□□□ 0.94
NCKIPSD-208ENST00000454134 DCAF8Q5TAQ9 597 aa20.93■□□□□ 0.94
NCKIPSD-208ENST00000454134 MICALL2Q8IY33 904 aa20.93■□□□□ 0.94
NCKIPSD-208ENST00000454134 TRPM4Q8TD43 1214 aa20.93■□□□□ 0.94
NCKIPSD-208ENST00000454134 BSDC1Q9NW68 430 aaPredicted RBP20.93■□□□□ 0.94
NCKIPSD-208ENST00000454134 MINPP1Q9UNW1 487 aa20.93■□□□□ 0.94
NCKIPSD-208ENST00000454134 ITGA6P23229 1130 aa20.92■□□□□ 0.94
NCKIPSD-208ENST00000454134 ATP2B4P23634 1241 aa20.92■□□□□ 0.94
NCKIPSD-208ENST00000454134 CNTNAP1P78357 1384 aa20.92■□□□□ 0.94
NCKIPSD-208ENST00000454134 SCN9AQ15858 1988 aa20.92■□□□□ 0.94
NCKIPSD-208ENST00000454134 H7C1D1 291 aa20.91■□□□□ 0.94
NCKIPSD-208ENST00000454134 CSF1RP07333 972 aa20.91■□□□□ 0.94
NCKIPSD-208ENST00000454134 SLC4A10Q6U841 1118 aa20.91■□□□□ 0.94
NCKIPSD-208ENST00000454134 E9PSI1 815 aa20.9■□□□□ 0.94
NCKIPSD-208ENST00000454134 IGHMBP2P38935 993 aaKnown RBP20.9■□□□□ 0.94
NCKIPSD-208ENST00000454134 SAMD7Q7Z3H4 446 aa20.9■□□□□ 0.94
NCKIPSD-208ENST00000454134 DPF2Q92785 391 aa20.9■□□□□ 0.94
NCKIPSD-208ENST00000454134 PCNTO95613 3336 aa20.89■□□□□ 0.94
NCKIPSD-208ENST00000454134 FOXO4P98177 505 aa20.89■□□□□ 0.93
NCKIPSD-208ENST00000454134 SLFN5Q08AF3 891 aa20.89■□□□□ 0.93
NCKIPSD-208ENST00000454134 TBC1D10BQ4KMP7 808 aaPredicted RBP20.89■□□□□ 0.93
NCKIPSD-208ENST00000454134 CDCA7LQ96GN5 454 aa20.89■□□□□ 0.93
NCKIPSD-208ENST00000454134 GLIS2Q9BZE0 524 aaPredicted RBP20.89■□□□□ 0.93
NCKIPSD-208ENST00000454134 ABT1Q9ULW3 272 aaKnown RBP20.89■□□□□ 0.93
NCKIPSD-208ENST00000454134 EGFRP00533 1210 aa20.88■□□□□ 0.93
NCKIPSD-208ENST00000454134 VIL1P09327 827 aaKnown RBP20.88■□□□□ 0.93
NCKIPSD-208ENST00000454134 HSPA1AP0DMV8 641 aaKnown RBP20.88■□□□□ 0.93
NCKIPSD-208ENST00000454134 HSPA1BP0DMV9 641 aaKnown RBP20.88■□□□□ 0.93
NCKIPSD-208ENST00000454134 CCT4P50991 539 aaKnown RBP20.88■□□□□ 0.93
NCKIPSD-208ENST00000454134 MPHOSPH8Q99549 860 aa20.88■□□□□ 0.93
NCKIPSD-208ENST00000454134 PGAP2Q9UHJ9 254 aa20.88■□□□□ 0.93
NCKIPSD-208ENST00000454134 CHMP3Q9Y3E7 222 aa20.88■□□□□ 0.93
NCKIPSD-208ENST00000454134 CCER2I3L3R5 266 aa20.87■□□□□ 0.93
NCKIPSD-208ENST00000454134 GRM8O00222 908 aa20.87■□□□□ 0.93
NCKIPSD-208ENST00000454134 RPS12P25398 132 aaKnown RBP20.87■□□□□ 0.93
NCKIPSD-208ENST00000454134 VEGFBP49765 207 aa20.87■□□□□ 0.93
NCKIPSD-208ENST00000454134 EPHA10Q5JZY3 1008 aa20.87■□□□□ 0.93
NCKIPSD-208ENST00000454134 RBM26Q5T8P6 1007 aaKnown RBP20.87■□□□□ 0.93
NCKIPSD-208ENST00000454134 CST9Q5W186 159 aa20.87■□□□□ 0.93
NCKIPSD-208ENST00000454134 MRPL50Q8N5N7 158 aaKnown RBP20.87■□□□□ 0.93
NCKIPSD-208ENST00000454134 ANKRD18BA2A2Z9 1011 aa20.86■□□□□ 0.93
NCKIPSD-208ENST00000454134 ZC3H15Q8WU90 426 aaKnown RBP20.86■□□□□ 0.93
NCKIPSD-208ENST00000454134 SRCIN1Q9C0H9 1055 aa20.86■□□□□ 0.93
NCKIPSD-208ENST00000454134 C9orf78Q9NZ63 289 aaPredicted RBP20.86■□□□□ 0.93
NCKIPSD-208ENST00000454134 MED23Q9ULK4 1368 aa20.85■□□□□ 0.93
NCKIPSD-208ENST00000454134 ALDH1L1O75891 902 aa20.85■□□□□ 0.93
NCKIPSD-208ENST00000454134 DEFB115Q30KQ5 88 aa20.85■□□□□ 0.93
NCKIPSD-208ENST00000454134 LMBR1LQ6UX01 489 aa20.85■□□□□ 0.93
NCKIPSD-208ENST00000454134 TXNRD3Q86VQ6 643 aa20.85■□□□□ 0.93
NCKIPSD-208ENST00000454134 SSH1Q8WYL5 1049 aa20.85■□□□□ 0.93
NCKIPSD-208ENST00000454134 TRPM7Q96QT4 1865 aa20.84■□□□□ 0.93
NCKIPSD-208ENST00000454134 RASSF10A6NK89 507 aa20.84■□□□□ 0.93
NCKIPSD-208ENST00000454134 KLRK1P26718 216 aa20.84■□□□□ 0.93
NCKIPSD-208ENST00000454134 IFIT5Q13325 482 aaKnown RBP20.84■□□□□ 0.93
NCKIPSD-208ENST00000454134 RSBN1LQ6PCB5 846 aaPredicted RBP20.84■□□□□ 0.93
NCKIPSD-208ENST00000454134 LEMD3Q9Y2U8 911 aa20.84■□□□□ 0.93
NCKIPSD-208ENST00000454134 ZNF804BA4D1E1 1349 aa20.83■□□□□ 0.93
NCKIPSD-208ENST00000454134 CHRNDQ07001 517 aa20.83■□□□□ 0.93
NCKIPSD-208ENST00000454134 DLK2Q6UY11 383 aa20.83■□□□□ 0.93
NCKIPSD-208ENST00000454134 PODNQ7Z5L7 613 aa20.83■□□□□ 0.93
NCKIPSD-208ENST00000454134 USP48Q86UV5 1035 aa20.83■□□□□ 0.93
NCKIPSD-208ENST00000454134 ANKRD2Q9GZV1 360 aa20.83■□□□□ 0.93
NCKIPSD-208ENST00000454134 ZNF408Q9H9D4 720 aa20.83■□□□□ 0.93
NCKIPSD-208ENST00000454134 USP17L3A6NCW0 530 aa20.82■□□□□ 0.92
NCKIPSD-208ENST00000454134 USP17L4A6NCW7 530 aa20.82■□□□□ 0.92
NCKIPSD-208ENST00000454134 SNAP23O00161 211 aa20.82■□□□□ 0.92
NCKIPSD-208ENST00000454134 CELF2O95319 508 aaKnown RBP20.82■□□□□ 0.92
NCKIPSD-208ENST00000454134 KIF4BQ2VIQ3 1234 aa20.82■□□□□ 0.92
NCKIPSD-208ENST00000454134 CDC37L1Q7L3B6 337 aa20.82■□□□□ 0.92
NCKIPSD-208ENST00000454134 USP17L1Q7RTZ2 530 aa20.82■□□□□ 0.92
NCKIPSD-208ENST00000454134 HELBQ8NG08 1087 aaPredicted RBP20.82■□□□□ 0.92
NCKIPSD-208ENST00000454134 ZNF594Q96JF6 807 aaPredicted RBP20.82■□□□□ 0.92
NCKIPSD-208ENST00000454134 PSME4Q14997 1843 aa20.82■□□□□ 0.92
NCKIPSD-208ENST00000454134 TAF5LO75529 589 aa20.81■□□□□ 0.92
NCKIPSD-208ENST00000454134 KCNJ4P48050 445 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 106.6 ms