RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 MBTPS1Q14703 1052 aa7.44□□□□□ -1.22
USP40-209ENST00000452724 TXNRD3Q86VQ6 643 aa7.44□□□□□ -1.22
USP40-209ENST00000452724 DCAF11Q8TEB1 546 aa7.44□□□□□ -1.22
USP40-209ENST00000452724 PLD4Q96BZ4 506 aa7.44□□□□□ -1.22
USP40-209ENST00000452724 NSUN5Q96P11 429 aaKnown RBP7.44□□□□□ -1.22
USP40-209ENST00000452724 TPSG1Q9NRR2 321 aa7.44□□□□□ -1.22
USP40-209ENST00000452724 RPLP1P05386 114 aaKnown RBP7.43□□□□□ -1.22
USP40-209ENST00000452724 TRIP4Q15650 581 aaPredicted RBP7.43□□□□□ -1.22
USP40-209ENST00000452724 GRIK5Q16478 980 aa7.43□□□□□ -1.22
USP40-209ENST00000452724 TTC39BQ5VTQ0 682 aaPredicted RBP7.43□□□□□ -1.22
USP40-209ENST00000452724 PHLDB3Q6NSJ2 640 aa7.43□□□□□ -1.22
USP40-209ENST00000452724 CAPN12Q6ZSI9 719 aa7.43□□□□□ -1.22
USP40-209ENST00000452724 FBXO11Q86XK2 927 aa7.43□□□□□ -1.22
USP40-209ENST00000452724 CACTIN-AS1Q8N1I8 211 aa7.43□□□□□ -1.22
USP40-209ENST00000452724 SPACA7Q96KW9 195 aa7.43□□□□□ -1.22
USP40-209ENST00000452724 J3QW42 95 aa7.42□□□□□ -1.22
USP40-209ENST00000452724 BRD1O95696 1058 aa7.42□□□□□ -1.22
USP40-209ENST00000452724 HYAL2Q12891 473 aa7.42□□□□□ -1.22
USP40-209ENST00000452724 TTC16Q8NEE8 873 aa7.42□□□□□ -1.22
USP40-209ENST00000452724 GPR152Q8TDT2 470 aa7.42□□□□□ -1.22
USP40-209ENST00000452724 PCSK2P16519 638 aa7.41□□□□□ -1.22
USP40-209ENST00000452724 RSPO4Q2I0M5 234 aaPredicted RBP7.41□□□□□ -1.22
USP40-209ENST00000452724 GDF6Q6KF10 455 aaPredicted RBP7.41□□□□□ -1.22
USP40-209ENST00000452724 SHISA2Q6UWI4 295 aa7.41□□□□□ -1.22
USP40-209ENST00000452724 ILDR2Q71H61 639 aa7.41□□□□□ -1.22
USP40-209ENST00000452724 MAP4K3Q8IVH8 894 aa7.41□□□□□ -1.22
USP40-209ENST00000452724 OR13H1Q8NG92 308 aa7.41□□□□□ -1.22
USP40-209ENST00000452724 SRA1Q9HD15 236 aaKnown RBP7.41□□□□□ -1.22
USP40-209ENST00000452724 SCNN1AP37088 669 aa7.4□□□□□ -1.22
USP40-209ENST00000452724 FAM26DQ5JW98 314 aa7.4□□□□□ -1.22
USP40-209ENST00000452724 NKAPLQ5M9Q1 402 aa7.4□□□□□ -1.22
USP40-209ENST00000452724 IGF2-ASQ6U949 168 aa7.4□□□□□ -1.22
USP40-209ENST00000452724 MUC3BQ9H195 1237 aa7.4□□□□□ -1.22
USP40-209ENST00000452724 ABI2Q9NYB9 513 aaPredicted RBP7.4□□□□□ -1.22
USP40-209ENST00000452724 MTMR7Q9Y216 660 aa7.4□□□□□ -1.22
USP40-209ENST00000452724 FAM177BA6PVY3 158 aa7.39□□□□□ -1.23
USP40-209ENST00000452724 PDE12Q6L8Q7 609 aaKnown RBP7.39□□□□□ -1.23
USP40-209ENST00000452724 IL22RA1Q8N6P7 574 aa7.39□□□□□ -1.23
USP40-209ENST00000452724 HELQQ8TDG4 1101 aa7.39□□□□□ -1.23
USP40-209ENST00000452724 SEPT3Q9UH03 358 aa7.39□□□□□ -1.23
USP40-209ENST00000452724 DYRK3O43781 588 aa7.38□□□□□ -1.23
USP40-209ENST00000452724 SMNDC1O75940 238 aaKnown RBP eCLIP7.38□□□□□ -1.23
USP40-209ENST00000452724 H2AFB1P0C5Y9 115 aa7.38□□□□□ -1.23
USP40-209ENST00000452724 H2AFB2P0C5Z0 115 aa7.38□□□□□ -1.23
USP40-209ENST00000452724 ZBTB39O15060 712 aa7.37□□□□□ -1.23
USP40-209ENST00000452724 NOM1Q5C9Z4 860 aaKnown RBP7.37□□□□□ -1.23
USP40-209ENST00000452724 ALKBH2Q6NS38 261 aa7.37□□□□□ -1.23
USP40-209ENST00000452724 ZNF438Q7Z4V0 828 aa7.37□□□□□ -1.23
USP40-209ENST00000452724 TP53INP1Q96A56 240 aa7.37□□□□□ -1.23
USP40-209ENST00000452724 NUDT16Q96DE0 195 aaKnown RBP7.37□□□□□ -1.23
USP40-209ENST00000452724 KCNA1Q09470 495 aa7.36□□□□□ -1.23
USP40-209ENST00000452724 ZMYM1Q5SVZ6 1142 aa7.36□□□□□ -1.23
USP40-209ENST00000452724 NCAPG2Q86XI2 1143 aa7.36□□□□□ -1.23
USP40-209ENST00000452724 WFDC12Q8WWY7 111 aa7.36□□□□□ -1.23
USP40-209ENST00000452724 MRPL18Q9H0U6 180 aaKnown RBP7.36□□□□□ -1.23
USP40-209ENST00000452724 ELP3Q9H9T3 547 aa7.36□□□□□ -1.23
USP40-209ENST00000452724 DLL1O00548 723 aa7.35□□□□□ -1.23
USP40-209ENST00000452724 DEAF1O75398 565 aaPredicted RBP7.35□□□□□ -1.23
USP40-209ENST00000452724 IREB2P48200 963 aaKnown RBP7.35□□□□□ -1.23
USP40-209ENST00000452724 CEP135Q66GS9 1140 aa7.35□□□□□ -1.23
USP40-209ENST00000452724 TXNDC2Q86VQ3 553 aa7.35□□□□□ -1.23
USP40-209ENST00000452724 AEBP1Q8IUX7 1158 aa7.35□□□□□ -1.23
USP40-209ENST00000452724 EDEM1Q92611 657 aa7.35□□□□□ -1.23
USP40-209ENST00000452724 TRIM33Q9UPN9 1127 aa7.35□□□□□ -1.23
USP40-209ENST00000452724 PPME1Q9Y570 386 aa7.35□□□□□ -1.23
USP40-209ENST00000452724 PATL2C9JE40 543 aaKnown RBP7.34□□□□□ -1.23
USP40-209ENST00000452724 KIF4AO95239 1232 aa7.34□□□□□ -1.23
USP40-209ENST00000452724 DNM1Q05193 864 aaKnown RBP7.34□□□□□ -1.23
USP40-209ENST00000452724 AAMPQ13685 434 aa7.34□□□□□ -1.23
USP40-209ENST00000452724 FAM117BQ6P1L5 589 aa7.34□□□□□ -1.23
USP40-209ENST00000452724 ATCAYQ86WG3 371 aa7.34□□□□□ -1.23
USP40-209ENST00000452724 Q8N3U1 123 aa7.34□□□□□ -1.23
USP40-209ENST00000452724 CCER1Q8TC90 406 aaPredicted RBP7.34□□□□□ -1.23
USP40-209ENST00000452724 GTF3C2Q8WUA4 911 aaPredicted RBP7.34□□□□□ -1.23
USP40-209ENST00000452724 MZF1P28698 734 aaPredicted RBP7.33□□□□□ -1.24
USP40-209ENST00000452724 NOS3P29474 1203 aa7.33□□□□□ -1.24
USP40-209ENST00000452724 CDC27P30260 824 aa7.33□□□□□ -1.24
USP40-209ENST00000452724 SERPINB4P48594 390 aa7.33□□□□□ -1.24
USP40-209ENST00000452724 XKR5Q6UX68 686 aa7.33□□□□□ -1.24
USP40-209ENST00000452724 PMEPA1Q969W9 287 aa7.33□□□□□ -1.24
USP40-209ENST00000452724 AKTIPQ9H8T0 292 aa7.33□□□□□ -1.24
USP40-209ENST00000452724 GNEQ9Y223 722 aaKnown RBP7.33□□□□□ -1.24
USP40-209ENST00000452724 SCO2A0A1W2PP80 73 aa7.32□□□□□ -1.24
USP40-209ENST00000452724 FAM13AO94988 1023 aa7.32□□□□□ -1.24
USP40-209ENST00000452724 ABL1P00519 1130 aa7.32□□□□□ -1.24
USP40-209ENST00000452724 CES1P23141 567 aa7.32□□□□□ -1.24
USP40-209ENST00000452724 MPSTP25325 297 aa7.32□□□□□ -1.24
USP40-209ENST00000452724 ITGB7P26010 798 aa7.32□□□□□ -1.24
USP40-209ENST00000452724 EIF1AXP47813 144 aaKnown RBP7.32□□□□□ -1.24
USP40-209ENST00000452724 ATP11AP98196 1134 aa7.32□□□□□ -1.24
USP40-209ENST00000452724 C8orf34Q49A92 452 aa7.32□□□□□ -1.24
USP40-209ENST00000452724 PRSS36Q5K4E3 855 aa7.32□□□□□ -1.24
USP40-209ENST00000452724 COL13A1Q5TAT6 717 aaPredicted RBP7.32□□□□□ -1.24
USP40-209ENST00000452724 TMEM130Q8N3G9 435 aa7.32□□□□□ -1.24
USP40-209ENST00000452724 SSBP4Q9BWG4 385 aaPredicted RBP7.32□□□□□ -1.24
USP40-209ENST00000452724 PBX4Q9BYU1 374 aa7.32□□□□□ -1.24
USP40-209ENST00000452724 LACRTQ9GZZ8 138 aa7.32□□□□□ -1.24
USP40-209ENST00000452724 RASSF4Q9H2L5 321 aa7.32□□□□□ -1.24
USP40-209ENST00000452724 TMEM63CQ9P1W3 806 aa7.32□□□□□ -1.24
USP40-209ENST00000452724 PDGFAP04085 211 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 216.5 ms