RNA–Protein interactions for RNA: ENST00000451893.5

C9orf3-208, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 514 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-208ENST00000451893 ECE2O60344 883 aa27.57■■■□□ 2
C9orf3-208ENST00000451893 IGKV5-2P06315 115 aa27.57■■■□□ 2
C9orf3-208ENST00000451893 HSPA1AP0DMV8 641 aaKnown RBP27.57■■■□□ 2
C9orf3-208ENST00000451893 HSPA1BP0DMV9 641 aaKnown RBP27.57■■■□□ 2
C9orf3-208ENST00000451893 TBC1D16Q8TBP0 767 aa27.57■■■□□ 2
C9orf3-208ENST00000451893 DOK7Q18PE1 504 aa27.56■■■□□ 2
C9orf3-208ENST00000451893 PAXIP1Q6ZW49 1069 aaPredicted RBP27.56■■■□□ 2
C9orf3-208ENST00000451893 UBE3BQ7Z3V4 1068 aa27.56■■■□□ 2
C9orf3-208ENST00000451893 CNTNAP1P78357 1384 aa27.56■■■□□ 2
C9orf3-208ENST00000451893 SPEF2Q9C093 1822 aa27.55■■■□□ 2
C9orf3-208ENST00000451893 YDJCA8MPS7 323 aa27.55■■■□□ 2
C9orf3-208ENST00000451893 DNAAF4Q8WXU2 420 aa27.55■■■□□ 2
C9orf3-208ENST00000451893 GPR101Q96P66 508 aaPredicted RBP27.55■■■□□ 2
C9orf3-208ENST00000451893 CNOT7Q9UIV1 285 aaKnown RBP27.55■■■□□ 2
C9orf3-208ENST00000451893 COL4A1P02462 1669 aa27.54■■■□□ 2
C9orf3-208ENST00000451893 XDHP47989 1333 aa27.53■■■□□ 2
C9orf3-208ENST00000451893 PSMD14O00487 310 aa27.53■■■□□ 2
C9orf3-208ENST00000451893 TRPM7Q96QT4 1865 aa27.53■■■□□ 2
C9orf3-208ENST00000451893 VAMP4O75379 141 aa27.52■■■□□ 2
C9orf3-208ENST00000451893 IGHMBP2P38935 993 aaKnown RBP27.52■■■□□ 2
C9orf3-208ENST00000451893 DEFB115Q30KQ5 88 aa27.52■■■□□ 2
C9orf3-208ENST00000451893 MICALL2Q8IY33 904 aa27.52■■■□□ 2
C9orf3-208ENST00000451893 PODXL2Q9NZ53 605 aa27.52■■■□□ 2
C9orf3-208ENST00000451893 ZBTB12Q9Y330 459 aaPredicted RBP27.52■■■□□ 2
C9orf3-208ENST00000451893 AIDAQ96BJ3 306 aa27.51■■□□□ 1.99
C9orf3-208ENST00000451893 ATP2B4P23634 1241 aa27.5■■□□□ 1.99
C9orf3-208ENST00000451893 HNRNPUQ00839 825 aaKnown RBP eCLIP27.5■■□□□ 1.99
C9orf3-208ENST00000451893 GCKRQ14397 625 aa27.5■■□□□ 1.99
C9orf3-208ENST00000451893 TTLL11Q8NHH1 800 aa27.5■■□□□ 1.99
C9orf3-208ENST00000451893 GREM2Q9H772 168 aa27.5■■□□□ 1.99
C9orf3-208ENST00000451893 RPS12P25398 132 aaKnown RBP27.49■■□□□ 1.99
C9orf3-208ENST00000451893 LINS1Q8NG48 757 aa27.49■■□□□ 1.99
C9orf3-208ENST00000451893 TRAF5O00463 557 aa27.48■■□□□ 1.99
C9orf3-208ENST00000451893 VEGFBP49765 207 aa27.48■■□□□ 1.99
C9orf3-208ENST00000451893 GRM1Q13255 1194 aa27.48■■□□□ 1.99
C9orf3-208ENST00000451893 DPF2Q92785 391 aa27.48■■□□□ 1.99
C9orf3-208ENST00000451893 MPHOSPH8Q99549 860 aa27.48■■□□□ 1.99
C9orf3-208ENST00000451893 ZNF408Q9H9D4 720 aa27.48■■□□□ 1.99
C9orf3-208ENST00000451893 H7C1W4 665 aa27.47■■□□□ 1.99
C9orf3-208ENST00000451893 TRPM4Q8TD43 1214 aa27.47■■□□□ 1.99
C9orf3-208ENST00000451893 ZC3H15Q8WU90 426 aaKnown RBP27.47■■□□□ 1.99
C9orf3-208ENST00000451893 CHMP3Q9Y3E7 222 aa27.47■■□□□ 1.99
C9orf3-208ENST00000451893 RBM26Q5T8P6 1007 aaKnown RBP27.46■■□□□ 1.99
C9orf3-208ENST00000451893 BSDC1Q9NW68 430 aaPredicted RBP27.46■■□□□ 1.99
C9orf3-208ENST00000451893 RASSF10A6NK89 507 aa27.45■■□□□ 1.98
C9orf3-208ENST00000451893 CELF2O95319 508 aaKnown RBP27.45■■□□□ 1.98
C9orf3-208ENST00000451893 FMR1Q06787 632 aaKnown RBP eCLIP27.45■■□□□ 1.98
C9orf3-208ENST00000451893 TBC1D10BQ4KMP7 808 aaPredicted RBP27.45■■□□□ 1.98
C9orf3-208ENST00000451893 CDC37L1Q7L3B6 337 aa27.45■■□□□ 1.98
C9orf3-208ENST00000451893 GLIS2Q9BZE0 524 aaPredicted RBP27.45■■□□□ 1.98
C9orf3-208ENST00000451893 SPINK5Q9NQ38 1064 aaPredicted RBP27.45■■□□□ 1.98
C9orf3-208ENST00000451893 SHTN1A0MZ66 631 aa27.44■■□□□ 1.98
C9orf3-208ENST00000451893 ITGA6P23229 1130 aa27.44■■□□□ 1.98
C9orf3-208ENST00000451893 ECE1P42892 770 aa27.44■■□□□ 1.98
C9orf3-208ENST00000451893 SAMD7Q7Z3H4 446 aa27.44■■□□□ 1.98
C9orf3-208ENST00000451893 FBXW7Q969H0 707 aa27.44■■□□□ 1.98
C9orf3-208ENST00000451893 RTL9Q8NET4 1388 aa27.44■■□□□ 1.98
C9orf3-208ENST00000451893 F6X3S4 739 aa27.43■■□□□ 1.98
C9orf3-208ENST00000451893 KCNJ4P48050 445 aa27.43■■□□□ 1.98
C9orf3-208ENST00000451893 COL13A1Q5TAT6 717 aaPredicted RBP27.43■■□□□ 1.98
C9orf3-208ENST00000451893 KCNQ5Q9NR82 932 aa27.43■■□□□ 1.98
C9orf3-208ENST00000451893 FAM161AQ3B820 660 aa27.42■■□□□ 1.98
C9orf3-208ENST00000451893 SLC4A10Q6U841 1118 aa27.42■■□□□ 1.98
C9orf3-208ENST00000451893 DCPSQ96C86 337 aaKnown RBP27.42■■□□□ 1.98
C9orf3-208ENST00000451893 PLA2G12BQ9BX93 195 aa27.42■■□□□ 1.98
C9orf3-208ENST00000451893 MINPP1Q9UNW1 487 aa27.42■■□□□ 1.98
C9orf3-208ENST00000451893 ZBED9Q6R2W3 1325 aa27.41■■□□□ 1.98
C9orf3-208ENST00000451893 WDR33Q9C0J8 1336 aaKnown RBP27.41■■□□□ 1.98
C9orf3-208ENST00000451893 SCN9AQ15858 1988 aa27.41■■□□□ 1.98
C9orf3-208ENST00000451893 ANKRD18BA2A2Z9 1011 aa27.41■■□□□ 1.98
C9orf3-208ENST00000451893 HIRAP54198 1017 aaPredicted RBP27.41■■□□□ 1.98
C9orf3-208ENST00000451893 TNS4Q8IZW8 715 aa27.41■■□□□ 1.98
C9orf3-208ENST00000451893 CCT4P50991 539 aaKnown RBP27.4■■□□□ 1.98
C9orf3-208ENST00000451893 KIF4BQ2VIQ3 1234 aa27.4■■□□□ 1.98
C9orf3-208ENST00000451893 ANKRD2Q9GZV1 360 aa27.4■■□□□ 1.98
C9orf3-208ENST00000451893 C9orf78Q9NZ63 289 aaPredicted RBP27.4■■□□□ 1.98
C9orf3-208ENST00000451893 VIL1P09327 827 aaKnown RBP27.39■■□□□ 1.98
C9orf3-208ENST00000451893 TAF7LQ5H9L4 462 aa27.39■■□□□ 1.98
C9orf3-208ENST00000451893 PODNQ7Z5L7 613 aa27.39■■□□□ 1.98
C9orf3-208ENST00000451893 BEGAINQ9BUH8 593 aa27.39■■□□□ 1.98
C9orf3-208ENST00000451893 MED23Q9ULK4 1368 aa27.38■■□□□ 1.97
C9orf3-208ENST00000451893 USP17L3A6NCW0 530 aa27.38■■□□□ 1.97
C9orf3-208ENST00000451893 USP17L4A6NCW7 530 aa27.38■■□□□ 1.97
C9orf3-208ENST00000451893 MAP2K1Q02750 393 aaPredicted RBP27.38■■□□□ 1.97
C9orf3-208ENST00000451893 IFIT5Q13325 482 aaKnown RBP27.38■■□□□ 1.97
C9orf3-208ENST00000451893 RSBN1LQ6PCB5 846 aaPredicted RBP27.38■■□□□ 1.97
C9orf3-208ENST00000451893 USP17L1Q7RTZ2 530 aa27.38■■□□□ 1.97
C9orf3-208ENST00000451893 USP48Q86UV5 1035 aa27.38■■□□□ 1.97
C9orf3-208ENST00000451893 CAPNS2Q96L46 248 aa27.38■■□□□ 1.97
C9orf3-208ENST00000451893 PGAP2Q9UHJ9 254 aa27.38■■□□□ 1.97
C9orf3-208ENST00000451893 LEMD3Q9Y2U8 911 aa27.38■■□□□ 1.97
C9orf3-208ENST00000451893 TLL2Q9Y6L7 1015 aa27.38■■□□□ 1.97
C9orf3-208ENST00000451893 PSME4Q14997 1843 aa27.37■■□□□ 1.97
C9orf3-208ENST00000451893 BEND3Q5T5X7 828 aa27.37■■□□□ 1.97
C9orf3-208ENST00000451893 CST9Q5W186 159 aa27.37■■□□□ 1.97
C9orf3-208ENST00000451893 KRT26Q7Z3Y9 468 aa27.37■■□□□ 1.97
C9orf3-208ENST00000451893 AGBL3Q8NEM8 1001 aa27.37■■□□□ 1.97
C9orf3-208ENST00000451893 CYP4F22Q6NT55 531 aa27.36■■□□□ 1.97
C9orf3-208ENST00000451893 POLR2AP24928 1970 aaKnown RBP27.36■■□□□ 1.97
C9orf3-208ENST00000451893 CTCFP49711 727 aaPredicted RBP27.35■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms