RNA–Protein interactions for RNA: ENST00000450000.5

CPSF7-208, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 4

Gene CPSF7, Length 574 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-208	ENST00000450000	UBE3B	Q7Z3V4	1068 aa		27.99	■■■□□ 2.07
CPSF7-208	ENST00000450000	TAF1	P21675	1872 aa		27.98	■■■□□ 2.07
CPSF7-208	ENST00000450000	GPR101	Q96P66	508 aa	Predicted RBP	27.98	■■■□□ 2.07
CPSF7-208	ENST00000450000	XDH	P47989	1333 aa		27.97	■■■□□ 2.07
CPSF7-208	ENST00000450000	PSMD14	O00487	310 aa		27.97	■■■□□ 2.07
CPSF7-208	ENST00000450000	DEFB115	Q30KQ5	88 aa		27.97	■■■□□ 2.07
CPSF7-208	ENST00000450000	MICALL2	Q8IY33	904 aa		27.97	■■■□□ 2.07
CPSF7-208	ENST00000450000	ZBTB12	Q9Y330	459 aa	Predicted RBP	27.97	■■■□□ 2.07
CPSF7-208	ENST00000450000	ATP2B4	P23634	1241 aa		27.96	■■■□□ 2.07
CPSF7-208	ENST00000450000	IGHMBP2	P38935	993 aa	Known RBP	27.96	■■■□□ 2.07
CPSF7-208	ENST00000450000	GCKR	Q14397	625 aa		27.96	■■■□□ 2.07
CPSF7-208	ENST00000450000	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	27.96	■■■□□ 2.07
CPSF7-208	ENST00000450000	LINS1	Q8NG48	757 aa		27.96	■■■□□ 2.07
CPSF7-208	ENST00000450000	TTLL11	Q8NHH1	800 aa		27.96	■■■□□ 2.07
CPSF7-208	ENST00000450000		H7C1W4	665 aa		27.95	■■■□□ 2.06
CPSF7-208	ENST00000450000	RPS12	P25398	132 aa	Known RBP	27.95	■■■□□ 2.06
CPSF7-208	ENST00000450000	ZC3H15	Q8WU90	426 aa	Known RBP	27.95	■■■□□ 2.06
CPSF7-208	ENST00000450000	DPF2	Q92785	391 aa		27.95	■■■□□ 2.06
CPSF7-208	ENST00000450000	GREM2	Q9H772	168 aa		27.95	■■■□□ 2.06
CPSF7-208	ENST00000450000	LRRC37A	A6NMS7	1700 aa		27.95	■■■□□ 2.06
CPSF7-208	ENST00000450000	DUOX1	Q9NRD9	1551 aa		27.94	■■■□□ 2.06
CPSF7-208	ENST00000450000	ADAMTSL1	Q8N6G6	1762 aa		27.94	■■■□□ 2.06
CPSF7-208	ENST00000450000	VEGFB	P49765	207 aa		27.94	■■■□□ 2.06
CPSF7-208	ENST00000450000	AIDA	Q96BJ3	306 aa		27.94	■■■□□ 2.06
CPSF7-208	ENST00000450000	LTBP1	Q14766	1721 aa		27.94	■■■□□ 2.06
CPSF7-208	ENST00000450000	BSDC1	Q9NW68	430 aa	Predicted RBP	27.93	■■■□□ 2.06
CPSF7-208	ENST00000450000	TRAF5	O00463	557 aa		27.92	■■■□□ 2.06
CPSF7-208	ENST00000450000	MPHOSPH8	Q99549	860 aa		27.92	■■■□□ 2.06
CPSF7-208	ENST00000450000	RASSF10	A6NK89	507 aa		27.91	■■■□□ 2.06
CPSF7-208	ENST00000450000	RBM26	Q5T8P6	1007 aa	Known RBP	27.91	■■■□□ 2.06
CPSF7-208	ENST00000450000	CDC37L1	Q7L3B6	337 aa		27.91	■■■□□ 2.06
CPSF7-208	ENST00000450000	TRPM4	Q8TD43	1214 aa		27.91	■■■□□ 2.06
CPSF7-208	ENST00000450000	SPINK5	Q9NQ38	1064 aa	Predicted RBP	27.91	■■■□□ 2.06
CPSF7-208	ENST00000450000	CELF2	O95319	508 aa	Known RBP	27.89	■■■□□ 2.06
CPSF7-208	ENST00000450000	ITGA6	P23229	1130 aa		27.89	■■■□□ 2.06
CPSF7-208	ENST00000450000	FMR1	Q06787	632 aa	Known RBP eCLIP	27.89	■■■□□ 2.06
CPSF7-208	ENST00000450000	GRM1	Q13255	1194 aa		27.89	■■■□□ 2.06
CPSF7-208	ENST00000450000	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	27.89	■■■□□ 2.06
CPSF7-208	ENST00000450000	PLA2G12B	Q9BX93	195 aa		27.89	■■■□□ 2.06
CPSF7-208	ENST00000450000	GLIS2	Q9BZE0	524 aa	Predicted RBP	27.89	■■■□□ 2.06
CPSF7-208	ENST00000450000	ZNF408	Q9H9D4	720 aa		27.89	■■■□□ 2.06
CPSF7-208	ENST00000450000	KCNQ5	Q9NR82	932 aa		27.89	■■■□□ 2.06
CPSF7-208	ENST00000450000	MINPP1	Q9UNW1	487 aa		27.89	■■■□□ 2.06
CPSF7-208	ENST00000450000	RTL9	Q8NET4	1388 aa		27.88	■■■□□ 2.05
CPSF7-208	ENST00000450000	SHTN1	A0MZ66	631 aa		27.88	■■■□□ 2.05
CPSF7-208	ENST00000450000	ECE1	P42892	770 aa		27.88	■■■□□ 2.05
CPSF7-208	ENST00000450000	COL13A1	Q5TAT6	717 aa	Predicted RBP	27.88	■■■□□ 2.05
CPSF7-208	ENST00000450000	SAMD7	Q7Z3H4	446 aa		27.88	■■■□□ 2.05
CPSF7-208	ENST00000450000	CHMP3	Q9Y3E7	222 aa		27.88	■■■□□ 2.05
CPSF7-208	ENST00000450000		F6X3S4	739 aa		27.87	■■■□□ 2.05
CPSF7-208	ENST00000450000	HIRA	P54198	1017 aa	Predicted RBP	27.87	■■■□□ 2.05
CPSF7-208	ENST00000450000	DCPS	Q96C86	337 aa	Known RBP	27.87	■■■□□ 2.05
CPSF7-208	ENST00000450000	ANKRD2	Q9GZV1	360 aa		27.87	■■■□□ 2.05
CPSF7-208	ENST00000450000	PGAP2	Q9UHJ9	254 aa		27.87	■■■□□ 2.05
CPSF7-208	ENST00000450000	COL4A1	P02462	1669 aa		27.87	■■■□□ 2.05
CPSF7-208	ENST00000450000	ANKRD18B	A2A2Z9	1011 aa		27.86	■■■□□ 2.05
CPSF7-208	ENST00000450000	VIL1	P09327	827 aa	Known RBP	27.86	■■■□□ 2.05
CPSF7-208	ENST00000450000	KCNJ4	P48050	445 aa		27.86	■■■□□ 2.05
CPSF7-208	ENST00000450000	PODN	Q7Z5L7	613 aa		27.86	■■■□□ 2.05
CPSF7-208	ENST00000450000	WDR33	Q9C0J8	1336 aa	Known RBP	27.86	■■■□□ 2.05
CPSF7-208	ENST00000450000	CCT4	P50991	539 aa	Known RBP	27.85	■■■□□ 2.05
CPSF7-208	ENST00000450000	FAM161A	Q3B820	660 aa		27.85	■■■□□ 2.05
CPSF7-208	ENST00000450000	SLC4A10	Q6U841	1118 aa		27.85	■■■□□ 2.05
CPSF7-208	ENST00000450000	CST9	Q5W186	159 aa		27.84	■■■□□ 2.05
CPSF7-208	ENST00000450000	USP48	Q86UV5	1035 aa		27.84	■■■□□ 2.05
CPSF7-208	ENST00000450000	TNS4	Q8IZW8	715 aa		27.84	■■■□□ 2.05
CPSF7-208	ENST00000450000	FBXW7	Q969H0	707 aa		27.84	■■■□□ 2.05
CPSF7-208	ENST00000450000	C9orf78	Q9NZ63	289 aa	Predicted RBP	27.84	■■■□□ 2.05
CPSF7-208	ENST00000450000	LEMD3	Q9Y2U8	911 aa		27.84	■■■□□ 2.05
CPSF7-208	ENST00000450000	USP17L3	A6NCW0	530 aa		27.83	■■■□□ 2.05
CPSF7-208	ENST00000450000	USP17L4	A6NCW7	530 aa		27.83	■■■□□ 2.05
CPSF7-208	ENST00000450000	MAP2K1	Q02750	393 aa	Predicted RBP	27.83	■■■□□ 2.05
CPSF7-208	ENST00000450000	KIF4B	Q2VIQ3	1234 aa		27.83	■■■□□ 2.05
CPSF7-208	ENST00000450000	BEND3	Q5T5X7	828 aa		27.83	■■■□□ 2.05
CPSF7-208	ENST00000450000	RSBN1L	Q6PCB5	846 aa	Predicted RBP	27.83	■■■□□ 2.05
CPSF7-208	ENST00000450000	USP17L1	Q7RTZ2	530 aa		27.83	■■■□□ 2.05
CPSF7-208	ENST00000450000	AGBL3	Q8NEM8	1001 aa		27.83	■■■□□ 2.05
CPSF7-208	ENST00000450000	TLL2	Q9Y6L7	1015 aa		27.83	■■■□□ 2.05
CPSF7-208	ENST00000450000	CSF1R	P07333	972 aa		27.82	■■■□□ 2.04
CPSF7-208	ENST00000450000	CASP7	P55210	303 aa		27.82	■■■□□ 2.04
CPSF7-208	ENST00000450000	IFIT5	Q13325	482 aa	Known RBP	27.82	■■■□□ 2.04
CPSF7-208	ENST00000450000	TAF7L	Q5H9L4	462 aa		27.82	■■■□□ 2.04
CPSF7-208	ENST00000450000	KRT26	Q7Z3Y9	468 aa		27.82	■■■□□ 2.04
CPSF7-208	ENST00000450000	CAPNS2	Q96L46	248 aa		27.82	■■■□□ 2.04
CPSF7-208	ENST00000450000	BEGAIN	Q9BUH8	593 aa		27.82	■■■□□ 2.04
CPSF7-208	ENST00000450000	MED23	Q9ULK4	1368 aa		27.82	■■■□□ 2.04
CPSF7-208	ENST00000450000		E9PSI1	815 aa		27.8	■■■□□ 2.04
CPSF7-208	ENST00000450000	CTCF	P49711	727 aa	Predicted RBP	27.8	■■■□□ 2.04
CPSF7-208	ENST00000450000	CYP4F22	Q6NT55	531 aa		27.8	■■■□□ 2.04
CPSF7-208	ENST00000450000	SRCIN1	Q9C0H9	1055 aa		27.8	■■■□□ 2.04
CPSF7-208	ENST00000450000	ZNF804B	A4D1E1	1349 aa		27.79	■■■□□ 2.04
CPSF7-208	ENST00000450000	GRM8	O00222	908 aa		27.79	■■■□□ 2.04
CPSF7-208	ENST00000450000	CCDC57	Q2TAC2	916 aa		27.79	■■■□□ 2.04
CPSF7-208	ENST00000450000	SULF1	Q8IWU6	871 aa		27.79	■■■□□ 2.04
CPSF7-208	ENST00000450000	COA1	Q9GZY4	146 aa		27.79	■■■□□ 2.04
CPSF7-208	ENST00000450000	FOXN1	O15353	648 aa		27.78	■■■□□ 2.04
CPSF7-208	ENST00000450000	ALDH1L1	O75891	902 aa		27.78	■■■□□ 2.04
CPSF7-208	ENST00000450000	USP17L8	P0C7I0	530 aa		27.78	■■■□□ 2.04
CPSF7-208	ENST00000450000	SAPCD2	Q86UD0	394 aa		27.77	■■■□□ 2.04
CPSF7-208	ENST00000450000	OGFOD1	Q8N543	542 aa		27.77	■■■□□ 2.04

Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms