RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 CCDC97Q96F63 343 aaPredicted RBP9.8□□□□□ -0.84
PTPN3-204ENST00000446349 SSX2IPQ9Y2D8 614 aa9.8□□□□□ -0.84
PTPN3-204ENST00000446349 HDAC1Q13547 482 aaPredicted RBP9.8□□□□□ -0.84
PTPN3-204ENST00000446349 FILIP1Q7Z7B0 1213 aa9.8□□□□□ -0.84
PTPN3-204ENST00000446349 CKAP2LQ8IYA6 745 aa9.8□□□□□ -0.84
PTPN3-204ENST00000446349 SREK1Q8WXA9 508 aaKnown RBP9.8□□□□□ -0.84
PTPN3-204ENST00000446349 STX8Q9UNK0 236 aa9.8□□□□□ -0.84
PTPN3-204ENST00000446349 USP16Q9Y5T5 823 aa9.8□□□□□ -0.84
PTPN3-204ENST00000446349 RAD50Q92878 1312 aa9.8□□□□□ -0.84
PTPN3-204ENST00000446349 CCDC66A2RUB6 948 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 KRT13P13646 458 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 CCDC82Q8N4S0 544 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 UBA5Q9GZZ9 404 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 SLC5A4Q9NY91 659 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 ACTN2P35609 894 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 RTN1Q16799 776 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 RBM26Q5T8P6 1007 aaKnown RBP9.79□□□□□ -0.84
PTPN3-204ENST00000446349 MCTP2Q6DN12 878 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 KCNG4Q8TDN1 519 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 TBC1D22AQ8WUA7 517 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 LRSAM1Q6UWE0 723 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 COPS6Q7L5N1 327 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 RTL1A6NKG5 1358 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 KIAA0754O94854 1291 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 EXOC1Q9NV70 894 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 NCKAP5LQ9HCH0 1330 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 ADGRL2O95490 1459 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 BICD1Q96G01 975 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 COL17A1Q9UMD9 1497 aaPredicted RBP9.79□□□□□ -0.84
PTPN3-204ENST00000446349 POTEB2H3BUK9 544 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 CTNNA2P26232 953 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 SMARCC2Q8TAQ2 1214 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 HOMER2Q9NSB8 354 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 GRIPAP1Q4V328 841 aa9.79□□□□□ -0.84
PTPN3-204ENST00000446349 RNF214Q8ND24 703 aa9.78□□□□□ -0.84
PTPN3-204ENST00000446349 SHROOM2Q13796 1616 aa9.78□□□□□ -0.84
PTPN3-204ENST00000446349 GOLGA6L10A0A0M3HER8 536 aa9.78□□□□□ -0.84
PTPN3-204ENST00000446349 SLC4A4Q9Y6R1 1079 aa9.78□□□□□ -0.84
PTPN3-204ENST00000446349 CCDC102BQ68D86 513 aa9.78□□□□□ -0.84
PTPN3-204ENST00000446349 CHPF2Q9P2E5 772 aa9.78□□□□□ -0.84
PTPN3-204ENST00000446349 ZNF219Q9P2Y4 722 aaPredicted RBP9.78□□□□□ -0.84
PTPN3-204ENST00000446349 NPC1L1Q9UHC9 1359 aa9.78□□□□□ -0.84
PTPN3-204ENST00000446349 TRIM27P14373 513 aa9.78□□□□□ -0.84
PTPN3-204ENST00000446349 MTIF2P46199 727 aaKnown RBP9.78□□□□□ -0.84
PTPN3-204ENST00000446349 PPP2R5BQ15173 497 aa9.78□□□□□ -0.84
PTPN3-204ENST00000446349 CCDC40Q4G0X9 1142 aa9.78□□□□□ -0.84
PTPN3-204ENST00000446349 ATL3Q6DD88 541 aa9.78□□□□□ -0.84
PTPN3-204ENST00000446349 VTI1AQ96AJ9 217 aa9.78□□□□□ -0.84
PTPN3-204ENST00000446349 CCNL1Q9UK58 526 aaPredicted RBP9.78□□□□□ -0.84
PTPN3-204ENST00000446349 ATP5J2-PTCD1G3V325 749 aa9.78□□□□□ -0.84
PTPN3-204ENST00000446349 TOP1P11387 765 aaKnown RBP9.78□□□□□ -0.84
PTPN3-204ENST00000446349 SNX16P57768 344 aa9.78□□□□□ -0.84
PTPN3-204ENST00000446349 STX1AQ16623 288 aa9.78□□□□□ -0.84
PTPN3-204ENST00000446349 ZNF772Q68DY9 489 aaPredicted RBP9.78□□□□□ -0.84
PTPN3-204ENST00000446349 RHPN1Q8TCX5 695 aa9.78□□□□□ -0.84
PTPN3-204ENST00000446349 IRS4O14654 1257 aaPredicted RBP9.78□□□□□ -0.84
PTPN3-204ENST00000446349 HAUS2Q9NVX0 235 aa9.78□□□□□ -0.84
PTPN3-204ENST00000446349 BTG4Q9NY30 223 aa9.78□□□□□ -0.84
PTPN3-204ENST00000446349 TSNARE1Q96NA8 513 aa9.77□□□□□ -0.84
PTPN3-204ENST00000446349 THUMPD2Q9BTF0 503 aaKnown RBP9.77□□□□□ -0.84
PTPN3-204ENST00000446349 ORC3Q9UBD5 711 aaPredicted RBP9.77□□□□□ -0.84
PTPN3-204ENST00000446349 MYCNP04198 464 aaPredicted RBP9.77□□□□□ -0.84
PTPN3-204ENST00000446349 TNFAIP1Q13829 316 aa9.77□□□□□ -0.84
PTPN3-204ENST00000446349 CCDC117Q8IWD4 279 aaPredicted RBP9.77□□□□□ -0.84
PTPN3-204ENST00000446349 ACSBG1Q96GR2 724 aa9.77□□□□□ -0.85
PTPN3-204ENST00000446349 DDX21Q9NR30 783 aaKnown RBP eCLIP9.77□□□□□ -0.85
PTPN3-204ENST00000446349 CEP83Q9Y592 693 aa9.77□□□□□ -0.85
PTPN3-204ENST00000446349 ATP8B2P98198 1209 aa9.77□□□□□ -0.85
PTPN3-204ENST00000446349 PATL2C9JE40 543 aaKnown RBP9.77□□□□□ -0.85
PTPN3-204ENST00000446349 TUBB4BP68371 445 aa9.77□□□□□ -0.85
PTPN3-204ENST00000446349 F6X3S4 739 aa9.77□□□□□ -0.85
PTPN3-204ENST00000446349 CHMP4BP1P59074 171 aa9.77□□□□□ -0.85
PTPN3-204ENST00000446349 EIF4A2Q14240 407 aaKnown RBP9.77□□□□□ -0.85
PTPN3-204ENST00000446349 BBXQ8WY36 941 aaPredicted RBP9.77□□□□□ -0.85
PTPN3-204ENST00000446349 LZTS2Q9BRK4 669 aa9.77□□□□□ -0.85
PTPN3-204ENST00000446349 ERVV-2B6SEH9 535 aa9.76□□□□□ -0.85
PTPN3-204ENST00000446349 PLBD2Q8NHP8 589 aa9.76□□□□□ -0.85
PTPN3-204ENST00000446349 INCENPQ9NQS7 918 aa9.76□□□□□ -0.85
PTPN3-204ENST00000446349 RNMTO43148 476 aaKnown RBP9.76□□□□□ -0.85
PTPN3-204ENST00000446349 CDAN1Q8IWY9 1227 aa9.76□□□□□ -0.85
PTPN3-204ENST00000446349 SH3TC1Q8TE82 1336 aa9.76□□□□□ -0.85
PTPN3-204ENST00000446349 GNPATO15228 680 aa9.76□□□□□ -0.85
PTPN3-204ENST00000446349 PABPC4Q13310 644 aaKnown RBP eCLIP9.76□□□□□ -0.85
PTPN3-204ENST00000446349 GGA1Q9UJY5 639 aa9.76□□□□□ -0.85
PTPN3-204ENST00000446349 DISP3Q9P2K9 1392 aa9.76□□□□□ -0.85
PTPN3-204ENST00000446349 PAG1Q9NWQ8 432 aa9.76□□□□□ -0.85
PTPN3-204ENST00000446349 KDM5CP41229 1560 aa9.76□□□□□ -0.85
PTPN3-204ENST00000446349 PDE8AO60658 829 aa9.76□□□□□ -0.85
PTPN3-204ENST00000446349 ANKRD44Q8N8A2 993 aa9.76□□□□□ -0.85
PTPN3-204ENST00000446349 TTC22Q5TAA0 569 aa9.76□□□□□ -0.85
PTPN3-204ENST00000446349 GCC2Q8IWJ2 1684 aa9.75□□□□□ -0.85
PTPN3-204ENST00000446349 TCIRG1Q13488 830 aa9.75□□□□□ -0.85
PTPN3-204ENST00000446349 NSFL1CQ9UNZ2 370 aaKnown RBP9.75□□□□□ -0.85
PTPN3-204ENST00000446349 BICDL2A1A5D9 508 aa9.75□□□□□ -0.85
PTPN3-204ENST00000446349 SLC26A6Q9BXS9 759 aa9.75□□□□□ -0.85
PTPN3-204ENST00000446349 VEZTQ9HBM0 779 aa9.75□□□□□ -0.85
PTPN3-204ENST00000446349 PUM3Q15397 648 aaKnown RBP9.75□□□□□ -0.85
PTPN3-204ENST00000446349 TMC4Q7Z404 712 aa9.75□□□□□ -0.85
PTPN3-204ENST00000446349 CRACR2AQ9BSW2 395 aa9.75□□□□□ -0.85
PTPN3-204ENST00000446349 HOXC9P31274 260 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms