RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 HSP90B1P14625 803 aaKnown RBP21.53■■□□□ 1.04
LIME1-202ENST00000444951 SLC10A5Q5PT55 438 aa21.53■■□□□ 1.04
LIME1-202ENST00000444951 COL13A1Q5TAT6 717 aaPredicted RBP21.53■■□□□ 1.04
LIME1-202ENST00000444951 KAZALD1Q96I82 304 aa21.53■■□□□ 1.04
LIME1-202ENST00000444951 NLRP3Q96P20 1036 aa21.53■■□□□ 1.04
LIME1-202ENST00000444951 CRAMP1Q96RY5 1269 aa21.53■■□□□ 1.04
LIME1-202ENST00000444951 ZBTB40Q9NUA8 1239 aa21.53■■□□□ 1.04
LIME1-202ENST00000444951 FOXO4P98177 505 aa21.52■■□□□ 1.04
LIME1-202ENST00000444951 EAPPQ56P03 285 aaPredicted RBP21.52■■□□□ 1.04
LIME1-202ENST00000444951 LDHDQ86WU2 507 aa21.52■■□□□ 1.04
LIME1-202ENST00000444951 RBM17Q96I25 401 aaKnown RBP21.52■■□□□ 1.04
LIME1-202ENST00000444951 HDAC5Q9UQL6 1122 aa21.52■■□□□ 1.04
LIME1-202ENST00000444951 PASKQ96RG2 1323 aa21.52■■□□□ 1.03
LIME1-202ENST00000444951 CTSWP56202 376 aa21.51■■□□□ 1.03
LIME1-202ENST00000444951 LMBR1LQ6UX01 489 aa21.51■■□□□ 1.03
LIME1-202ENST00000444951 HACL1Q9UJ83 578 aa21.51■■□□□ 1.03
LIME1-202ENST00000444951 EPHX2P34913 555 aa21.5■■□□□ 1.03
LIME1-202ENST00000444951 CC2D2BQ6DHV5 1058 aa21.5■■□□□ 1.03
LIME1-202ENST00000444951 CREBZFQ9NS37 354 aa21.5■■□□□ 1.03
LIME1-202ENST00000444951 MKRN1Q9UHC7 482 aaKnown RBP21.5■■□□□ 1.03
LIME1-202ENST00000444951 TAF1P21675 1872 aa21.49■■□□□ 1.03
LIME1-202ENST00000444951 HSPA1AP0DMV8 641 aaKnown RBP21.49■■□□□ 1.03
LIME1-202ENST00000444951 HSPA1BP0DMV9 641 aaKnown RBP21.49■■□□□ 1.03
LIME1-202ENST00000444951 ANKRD44Q8N8A2 993 aa21.49■■□□□ 1.03
LIME1-202ENST00000444951 PLA2G12BQ9BX93 195 aa21.49■■□□□ 1.03
LIME1-202ENST00000444951 ITGBL1O95965 494 aaPredicted RBP21.48■■□□□ 1.03
LIME1-202ENST00000444951 GPC2Q8N158 579 aa21.48■■□□□ 1.03
LIME1-202ENST00000444951 TTLL11Q8NHH1 800 aa21.48■■□□□ 1.03
LIME1-202ENST00000444951 JDP2Q8WYK2 163 aa21.48■■□□□ 1.03
LIME1-202ENST00000444951 FAM161AQ3B820 660 aa21.47■■□□□ 1.03
LIME1-202ENST00000444951 CCDC152Q4G0S7 254 aa21.47■■□□□ 1.03
LIME1-202ENST00000444951 LARGE2Q8N3Y3 721 aa21.47■■□□□ 1.03
LIME1-202ENST00000444951 GREM2Q9H772 168 aa21.47■■□□□ 1.03
LIME1-202ENST00000444951 GJA3Q9Y6H8 435 aa21.47■■□□□ 1.03
LIME1-202ENST00000444951 ATP6V0A2Q9Y487 856 aa21.46■■□□□ 1.03
LIME1-202ENST00000444951 MYH3P11055 1940 aa21.46■■□□□ 1.03
LIME1-202ENST00000444951 CSF1RP07333 972 aa21.45■■□□□ 1.02
LIME1-202ENST00000444951 SF3B3Q15393 1217 aaKnown RBP21.45■■□□□ 1.02
LIME1-202ENST00000444951 AOC3Q16853 763 aa21.45■■□□□ 1.02
LIME1-202ENST00000444951 MAP1SQ66K74 1059 aaPredicted RBP21.45■■□□□ 1.02
LIME1-202ENST00000444951 SEC31BQ9NQW1 1179 aa21.45■■□□□ 1.02
LIME1-202ENST00000444951 CLEC11AQ9Y240 323 aa21.45■■□□□ 1.02
LIME1-202ENST00000444951 COL4A1P02462 1669 aa21.44■■□□□ 1.02
LIME1-202ENST00000444951 SRGAP3O43295 1099 aa21.44■■□□□ 1.02
LIME1-202ENST00000444951 SCNN1DP51172 638 aa21.44■■□□□ 1.02
LIME1-202ENST00000444951 EIF6P56537 245 aaKnown RBP21.44■■□□□ 1.02
LIME1-202ENST00000444951 RABL6Q3YEC7 729 aaPredicted RBP21.44■■□□□ 1.02
LIME1-202ENST00000444951 CEP85Q6P2H3 762 aa21.44■■□□□ 1.02
LIME1-202ENST00000444951 DDX46Q7L014 1031 aaKnown RBP21.44■■□□□ 1.02
LIME1-202ENST00000444951 PCDHB15Q9Y5E8 787 aa21.44■■□□□ 1.02
LIME1-202ENST00000444951 CNTNAP1P78357 1384 aa21.44■■□□□ 1.02
LIME1-202ENST00000444951 PNMA6EA0A0J9YXQ4 647 aa21.43■■□□□ 1.02
LIME1-202ENST00000444951 PPIP5K2O43314 1243 aa21.43■■□□□ 1.02
LIME1-202ENST00000444951 ITGA6P23229 1130 aa21.43■■□□□ 1.02
LIME1-202ENST00000444951 EPS15P42566 896 aa21.43■■□□□ 1.02
LIME1-202ENST00000444951 ATP8B2P98198 1209 aa21.43■■□□□ 1.02
LIME1-202ENST00000444951 IFIT5Q13325 482 aaKnown RBP21.43■■□□□ 1.02
LIME1-202ENST00000444951 CCDC57Q2TAC2 916 aa21.43■■□□□ 1.02
LIME1-202ENST00000444951 TAF7LQ5H9L4 462 aa21.43■■□□□ 1.02
LIME1-202ENST00000444951 ANKRD18BA2A2Z9 1011 aa21.42■■□□□ 1.02
LIME1-202ENST00000444951 GRIPAP1Q4V328 841 aa21.42■■□□□ 1.02
LIME1-202ENST00000444951 CNTROBQ8N137 903 aa21.42■■□□□ 1.02
LIME1-202ENST00000444951 ZNF594Q96JF6 807 aaPredicted RBP21.42■■□□□ 1.02
LIME1-202ENST00000444951 DUOX1Q9NRD9 1551 aa21.41■■□□□ 1.02
LIME1-202ENST00000444951 FMR1Q06787 632 aaKnown RBP eCLIP21.41■■□□□ 1.02
LIME1-202ENST00000444951 AAMPQ13685 434 aa21.41■■□□□ 1.02
LIME1-202ENST00000444951 PNMA8AQ86V59 439 aaPredicted RBP21.41■■□□□ 1.02
LIME1-202ENST00000444951 RPAP2Q8IXW5 612 aaPredicted RBP21.41■■□□□ 1.02
LIME1-202ENST00000444951 NIM1KQ8IY84 436 aa21.41■■□□□ 1.02
LIME1-202ENST00000444951 KLHDC4Q8TBB5 520 aa21.41■■□□□ 1.02
LIME1-202ENST00000444951 TMEM88BA6NKF7 163 aa21.4■■□□□ 1.02
LIME1-202ENST00000444951 SIRT2Q8IXJ6 389 aa21.4■■□□□ 1.02
LIME1-202ENST00000444951 RTFDC1Q9BY42 306 aaPredicted RBP21.4■■□□□ 1.02
LIME1-202ENST00000444951 LRRC37AA6NMS7 1700 aa21.39■■□□□ 1.01
LIME1-202ENST00000444951 MTX1Q13505 466 aa21.39■■□□□ 1.01
LIME1-202ENST00000444951 GRAPQ13588 217 aa21.39■■□□□ 1.01
LIME1-202ENST00000444951 SP8Q8IXZ3 490 aa21.39■■□□□ 1.01
LIME1-202ENST00000444951 GRAPLQ8TC17 118 aaPredicted RBP21.39■■□□□ 1.01
LIME1-202ENST00000444951 CELF1Q92879 486 aaKnown RBP21.39■■□□□ 1.01
LIME1-202ENST00000444951 SIL1Q9H173 461 aa21.39■■□□□ 1.01
LIME1-202ENST00000444951 PA2G4Q9UQ80 394 aaKnown RBP21.39■■□□□ 1.01
LIME1-202ENST00000444951 RTL9Q8NET4 1388 aa21.38■■□□□ 1.01
LIME1-202ENST00000444951 BBOX1O75936 387 aa21.38■■□□□ 1.01
LIME1-202ENST00000444951 VEGFBP49765 207 aa21.38■■□□□ 1.01
LIME1-202ENST00000444951 DPP8Q6V1X1 898 aaPredicted RBP21.38■■□□□ 1.01
LIME1-202ENST00000444951 ANKRD18AQ8IVF6 992 aa21.38■■□□□ 1.01
LIME1-202ENST00000444951 CDC5LQ99459 802 aaKnown RBP21.38■■□□□ 1.01
LIME1-202ENST00000444951 SPEF2Q9C093 1822 aa21.37■■□□□ 1.01
LIME1-202ENST00000444951 HMMRO75330 724 aa21.37■■□□□ 1.01
LIME1-202ENST00000444951 LMOD1P29536 600 aaPredicted RBP21.37■■□□□ 1.01
LIME1-202ENST00000444951 IGHMBP2P38935 993 aaKnown RBP21.37■■□□□ 1.01
LIME1-202ENST00000444951 CXCL9Q07325 125 aa21.37■■□□□ 1.01
LIME1-202ENST00000444951 MPNDQ8N594 471 aa21.37■■□□□ 1.01
LIME1-202ENST00000444951 SSH3Q8TE77 659 aa21.37■■□□□ 1.01
LIME1-202ENST00000444951 RFX5P48382 616 aaPredicted RBP21.36■■□□□ 1.01
LIME1-202ENST00000444951 RPS8P62241 208 aaKnown RBP21.36■■□□□ 1.01
LIME1-202ENST00000444951 POLA2Q14181 598 aa21.36■■□□□ 1.01
LIME1-202ENST00000444951 TNS4Q8IZW8 715 aa21.36■■□□□ 1.01
LIME1-202ENST00000444951 MPHOSPH8Q99549 860 aa21.36■■□□□ 1.01
LIME1-202ENST00000444951 TMX4Q9H1E5 349 aaPredicted RBP21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms