RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 FLAD1Q8NFF5 587 aa9.81□□□□□ -0.84
CCDC39-201ENST00000442201 NLRP3Q96P20 1036 aa9.81□□□□□ -0.84
CCDC39-201ENST00000442201 MPHOSPH8Q99549 860 aa9.81□□□□□ -0.84
CCDC39-201ENST00000442201 DBNDD2Q9BQY9 259 aa9.81□□□□□ -0.84
CCDC39-201ENST00000442201 IGHMBP2P38935 993 aaKnown RBP9.81□□□□□ -0.84
CCDC39-201ENST00000442201 NFKBIBQ15653 356 aa9.81□□□□□ -0.84
CCDC39-201ENST00000442201 CDC5LQ99459 802 aaKnown RBP9.81□□□□□ -0.84
CCDC39-201ENST00000442201 SEC31BQ9NQW1 1179 aa9.81□□□□□ -0.84
CCDC39-201ENST00000442201 ABCC12Q96J65 1359 aa9.81□□□□□ -0.84
CCDC39-201ENST00000442201 A0A1B0GUL7 405 aa9.81□□□□□ -0.84
CCDC39-201ENST00000442201 MAP4K4O95819 1239 aaPredicted RBP9.81□□□□□ -0.84
CCDC39-201ENST00000442201 TIMM10P62072 90 aa9.81□□□□□ -0.84
CCDC39-201ENST00000442201 SF3B2Q13435 895 aaKnown RBP9.81□□□□□ -0.84
CCDC39-201ENST00000442201 ATP5JP18859 108 aa9.8□□□□□ -0.84
CCDC39-201ENST00000442201 PAXIP1Q6ZW49 1069 aaPredicted RBP9.8□□□□□ -0.84
CCDC39-201ENST00000442201 CNBD1Q8NA66 436 aa9.8□□□□□ -0.84
CCDC39-201ENST00000442201 TBC1D32Q96NH3 1257 aa9.8□□□□□ -0.84
CCDC39-201ENST00000442201 BOLA2Q9H3K6 86 aa9.8□□□□□ -0.84
CCDC39-201ENST00000442201 MROH5Q6ZUA9 1318 aa9.8□□□□□ -0.84
CCDC39-201ENST00000442201 ZNF609O15014 1411 aa9.8□□□□□ -0.84
CCDC39-201ENST00000442201 EN1Q05925 392 aaPredicted RBP9.8□□□□□ -0.84
CCDC39-201ENST00000442201 C3orf67Q6ZVT6 689 aa9.8□□□□□ -0.84
CCDC39-201ENST00000442201 EVI5LQ96CN4 794 aa9.8□□□□□ -0.84
CCDC39-201ENST00000442201 C22orf23Q9BZE7 217 aa9.8□□□□□ -0.84
CCDC39-201ENST00000442201 C4AP0C0L4 1744 aa9.79□□□□□ -0.84
CCDC39-201ENST00000442201 CHMLP26374 656 aa9.79□□□□□ -0.84
CCDC39-201ENST00000442201 TM4SF1P30408 202 aa9.79□□□□□ -0.84
CCDC39-201ENST00000442201 ATP2B3Q16720 1220 aa9.79□□□□□ -0.84
CCDC39-201ENST00000442201 GORABQ5T7V8 394 aa9.79□□□□□ -0.84
CCDC39-201ENST00000442201 CAMKK2Q96RR4 588 aa9.79□□□□□ -0.84
CCDC39-201ENST00000442201 UBR3Q6ZT12 1888 aa9.79□□□□□ -0.84
CCDC39-201ENST00000442201 RIC1Q4ADV7 1423 aa9.79□□□□□ -0.84
CCDC39-201ENST00000442201 PDE8BO95263 885 aa9.79□□□□□ -0.84
CCDC39-201ENST00000442201 CHRM1P11229 460 aaPredicted RBP9.79□□□□□ -0.84
CCDC39-201ENST00000442201 BAG6P46379 1132 aa9.79□□□□□ -0.84
CCDC39-201ENST00000442201 EZH2Q15910 746 aaKnown RBP9.79□□□□□ -0.84
CCDC39-201ENST00000442201 COL23A1Q86Y22 540 aaPredicted RBP9.79□□□□□ -0.84
CCDC39-201ENST00000442201 ANKRD18AQ8IVF6 992 aa9.79□□□□□ -0.84
CCDC39-201ENST00000442201 NLGN1Q8N2Q7 840 aa9.79□□□□□ -0.84
CCDC39-201ENST00000442201 CCDC24Q8N4L8 307 aa9.79□□□□□ -0.84
CCDC39-201ENST00000442201 NAP1L5Q96NT1 182 aaPredicted RBP9.79□□□□□ -0.84
CCDC39-201ENST00000442201 REC8O95072 547 aa9.78□□□□□ -0.84
CCDC39-201ENST00000442201 SERPINB2P05120 415 aa9.78□□□□□ -0.84
CCDC39-201ENST00000442201 CCDC158Q5M9N0 1113 aa9.78□□□□□ -0.84
CCDC39-201ENST00000442201 PRR5LQ6MZQ0 368 aa9.78□□□□□ -0.84
CCDC39-201ENST00000442201 VGLL2Q8N8G2 317 aa9.78□□□□□ -0.84
CCDC39-201ENST00000442201 TNS1Q9HBL0 1735 aaKnown RBP9.78□□□□□ -0.84
CCDC39-201ENST00000442201 ST5P78524 1137 aa9.78□□□□□ -0.84
CCDC39-201ENST00000442201 XAGE2Q96GT9 111 aa9.78□□□□□ -0.84
CCDC39-201ENST00000442201 ESYT1Q9BSJ8 1104 aa9.78□□□□□ -0.84
CCDC39-201ENST00000442201 COL24A1Q17RW2 1714 aa9.77□□□□□ -0.84
CCDC39-201ENST00000442201 MYH3P11055 1940 aa9.77□□□□□ -0.84
CCDC39-201ENST00000442201 DDX60Q8IY21 1712 aaKnown RBP9.77□□□□□ -0.85
CCDC39-201ENST00000442201 TPM2P07951 284 aa9.77□□□□□ -0.85
CCDC39-201ENST00000442201 PUM3Q15397 648 aaKnown RBP9.77□□□□□ -0.85
CCDC39-201ENST00000442201 DDX46Q7L014 1031 aaKnown RBP9.77□□□□□ -0.85
CCDC39-201ENST00000442201 DDRGK1Q96HY6 314 aa9.77□□□□□ -0.85
CCDC39-201ENST00000442201 STK32BQ9NY57 414 aa9.77□□□□□ -0.85
CCDC39-201ENST00000442201 LRP5O75197 1615 aa9.77□□□□□ -0.85
CCDC39-201ENST00000442201 SMAP1Q8IYB5 467 aaPredicted RBP9.77□□□□□ -0.85
CCDC39-201ENST00000442201 HELBQ8NG08 1087 aaPredicted RBP9.77□□□□□ -0.85
CCDC39-201ENST00000442201 LPIN2Q92539 896 aa9.77□□□□□ -0.85
CCDC39-201ENST00000442201 HAUS7Q99871 368 aa9.77□□□□□ -0.85
CCDC39-201ENST00000442201 DIAPH3Q9NSV4 1193 aa9.77□□□□□ -0.85
CCDC39-201ENST00000442201 BSDC1Q9NW68 430 aaPredicted RBP9.77□□□□□ -0.85
CCDC39-201ENST00000442201 PNPLA7Q6ZV29 1317 aa9.77□□□□□ -0.85
CCDC39-201ENST00000442201 LAMB2P55268 1798 aa9.77□□□□□ -0.85
CCDC39-201ENST00000442201 HIP1O00291 1037 aa9.76□□□□□ -0.85
CCDC39-201ENST00000442201 IFIT1P09914 478 aaKnown RBP9.76□□□□□ -0.85
CCDC39-201ENST00000442201 ADORA1P30542 326 aa9.76□□□□□ -0.85
CCDC39-201ENST00000442201 RBM25P49756 843 aaKnown RBP9.76□□□□□ -0.85
CCDC39-201ENST00000442201 RPS8P62241 208 aaKnown RBP9.76□□□□□ -0.85
CCDC39-201ENST00000442201 DDR1Q08345 913 aa9.76□□□□□ -0.85
CCDC39-201ENST00000442201 SLC15A2Q16348 729 aa9.76□□□□□ -0.85
CCDC39-201ENST00000442201 TTC39AQ5SRH9 613 aa9.76□□□□□ -0.85
CCDC39-201ENST00000442201 DNAJC2Q99543 621 aaKnown RBP9.76□□□□□ -0.85
CCDC39-201ENST00000442201 FSD1Q9BTV5 496 aa9.76□□□□□ -0.85
CCDC39-201ENST00000442201 POLRMTO00411 1230 aaKnown RBP9.76□□□□□ -0.85
CCDC39-201ENST00000442201 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.76□□□□□ -0.85
CCDC39-201ENST00000442201 RUFY2Q8WXA3 655 aa9.76□□□□□ -0.85
CCDC39-201ENST00000442201 CELF1Q92879 486 aaKnown RBP9.76□□□□□ -0.85
CCDC39-201ENST00000442201 RGPD3A6NKT7 1758 aaPredicted RBP9.76□□□□□ -0.85
CCDC39-201ENST00000442201 RGPD4Q7Z3J3 1758 aa9.76□□□□□ -0.85
CCDC39-201ENST00000442201 SLC5A1P13866 664 aa9.76□□□□□ -0.85
CCDC39-201ENST00000442201 CHRNDQ07001 517 aa9.76□□□□□ -0.85
CCDC39-201ENST00000442201 TAF5LO75529 589 aa9.75□□□□□ -0.85
CCDC39-201ENST00000442201 FGFR2P21802 821 aa9.75□□□□□ -0.85
CCDC39-201ENST00000442201 DEFB132Q7Z7B7 95 aa9.75□□□□□ -0.85
CCDC39-201ENST00000442201 EDC3Q96F86 508 aaKnown RBP9.75□□□□□ -0.85
CCDC39-201ENST00000442201 USP26Q9BXU7 913 aa9.75□□□□□ -0.85
CCDC39-201ENST00000442201 CWC27Q6UX04 472 aaKnown RBP9.74□□□□□ -0.85
CCDC39-201ENST00000442201 RPGRQ92834 1020 aaKnown RBP9.74□□□□□ -0.85
CCDC39-201ENST00000442201 ANO2Q9NQ90 1003 aa9.74□□□□□ -0.85
CCDC39-201ENST00000442201 PAG1Q9NWQ8 432 aa9.74□□□□□ -0.85
CCDC39-201ENST00000442201 SGSM2O43147 1006 aa9.74□□□□□ -0.85
CCDC39-201ENST00000442201 UTP14CQ5TAP6 766 aaKnown RBP9.74□□□□□ -0.85
CCDC39-201ENST00000442201 MINPP1Q9UNW1 487 aa9.74□□□□□ -0.85
CCDC39-201ENST00000442201 NDUFB9Q9Y6M9 179 aa9.74□□□□□ -0.85
CCDC39-201ENST00000442201 GOLIM4O00461 696 aa9.74□□□□□ -0.85
CCDC39-201ENST00000442201 MMP10P09238 476 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms